BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50960.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914215 jgi|Araly1|914215|Al_scaffold_0001_4469 1507 0.0
> Ahg914215 jgi|Araly1|914215|Al_scaffold_0001_4469
Length=1011
Score = 1507 bits (816), Expect = 0.0
Identities = 948/1013 (94%), Gaps = 4/1013 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCAACCTCCCTTTAAGACAAATTTCTGCTCGATTTTCGGAAGCTCATTTCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCTTCTCAACCTCCCTTTAAGACAAATTTCTGCTCGATTTTCGGAAGCTCCTTTCCA 60
Query 61 AATTC-AACTAGTGAGAGCAATACAAACACATCAACTATCCAAACCTCAGGCATAAAGCT 119
|| | || |||||| ||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 61 AA-ACAAATTAGTGATAGCAACACAAACACATCAACTATCCAAACCGGAGGCTTAAAGCT 119
Query 120 TCCTGTGATCGATCTCAGCCATCTAACTAGTGGTGAGGAGGTCAAACGCAAAAGATGTGT 179
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 TCCTGTGATTGATCTCAGCCATCTAACTAGTGGCGAGGAGGTCAAACGCAAAAGATGTGT 179
Query 180 GAAACAAATGGTTGCAGCTGCGAAAGAGTGGGGATTTTTTCAAATTGTGAACCATGGAAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAAACAAATGGTTGCAGCTGCGAAAGAGTGGGGATTTTTTCAAATTGTGAACCATGGAAT 239
Query 240 TCCCAAAGACGTCTTTGAGATGATGCTCCTCGAAGAGAAGAAACTCTTTGACCAACCTTT 299
| | ||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||
Sbjct 240 TTCTAAAGACGTCTTTGAGATGATGTTTCTCGAAGAGAAGAAACTCTTTGACCTACCCTT 299
Query 300 TTCTGTGAAAGTCAGAGAA-CGTTTTTCGGACTTATCGAAGAATAGTTACCGTTGGGGAA 358
||||| ||||||| ||||| |||| | ||||||||||||||||||||||| | |||||||
Sbjct 300 TTCTGCGAAAGTCCGAGAAACGTTCT-CGGACTTATCGAAGAATAGTTACAGGTGGGGAA 358
Query 359 ACCCTAGCGCCACTTCTCCCGCTCAGTACTCCGTTTCGGAAGCGTTTCACATCATTCTTT 418
|||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 359 ACCCTAACGCCACTTCCCCCGCTCAATACTCCGTTTCGGAAGCGTTTCACATCACTCTTT 418
Query 419 CAGAGGTTTCAAGGATTTCTGATGATCGCAACAACCTCAGAACAATCGTTGAAACGTATG 478
||||| |||||| | |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 419 CAGAGATTTCAAAGTTTTCTGATGATCGCAACAACCTGAGAACAACCGTTGAAACGTATG 478
Query 479 TGCAAGAGATAGCTCGAGTGGCACAAATGATATGTGAAATACTGGGGAAACAAGTGAACG 538
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 479 TGCAAGAGATAACTCGAGTGGCACAAATGATATGTGAAGTACTCGGGAAACAAGTGAACG 538
Query 539 TGAGTTCGGAGTATTTCGAAAACATTTTTGAGCTTGAAAACAGTTTTCTAAGGCTCAATA 598
||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 539 TGAACTCGGAGTATTTCGAAAACATTTTTGAGCTTAAAAACAGTTTTTTAAGGCTCAATA 598
Query 599 AGTACCATCCTAGTGTTTTTGGTTCTGAAGTGTTTGGTTTGGTTCCTCATACCGATACAA 658
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTACCATCCTCGTGTTTTTGGTTCTGAAGTGTTTGGTTTGGTTCCTCATACCGATACAA 658
Query 659 GTTTTCTCACTATACTCTCTCAAGATCAAATCGGAGGGTTAGAATTGGAAAATAATGGAC 718
| || |||||||||||||||||||||||||||||||| |||||| || |||| ||||||
Sbjct 659 GCTTCCTCACTATACTCTCTCAAGATCAAATCGGAGGATTAGAACTGAAAAAAAATGGAG 718
Query 719 AATGGATCAGCGTAAAACCTTGCTTGGAAGCCCTTACAGTCAACATTGGGGATATGTTTC 778
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 719 AATGGATCAACGTAAAACCTTGCTCGGAAGCCCTTACAGTCAATATTGGGGATATGTTTC 778
Query 779 AGGCACTGAGTAATGGAGTGTACCAAAGCGTGAGACATAGAGTGATTTCTCCAGCAAATA 838
||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 779 AGGCATTGAGTAATGGAGTGTACGAGAGCGTGAGACATAGAGTGATTTCTCCGGCAAATA 838
Query 839 TCGAGAGGATGTCAATAGCTTTCTTCGTATGTCCTTATCTCGAAACTGAGATCGATTGCT 898
||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 839 TCGAGAGAATGTCGATAGCCTTCTTCGTATGTCCTTATCTCGAAACCGAGATCGAATGCT 898
Query 899 TTGGGTATCCAAAGAAGTATAGAAGATTCAGTTTCAGAGAGTACAAAGAGCAGAGTGAAC 958
| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 899 TCGGGTATCCAAAGAAGTATAAAAGATTCAGTTTCAAAGAGTACAAAGAGCAGAGTGAAC 958
Query 959 ATGATGTTAAAGAAACTGGTGATAAGGTAGGCTTGTCCAGGTTTCTCATTTGA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGATGTTAAAGAAACTGGTGATAAGGTAGGCTTGTCCAGGTTTCTCATTTGA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5