BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50970.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474178 jgi|Araly1|474178|fgenesh2_kg.1__4132__AT1G50500.1 972 0.0
Ahg923562 jgi|Araly1|923562|scaffold_104843.1 741 0.0
Ahg337252 jgi|Araly1|337252|fgenesh1_pg.C_scaffold_1003817 379 3e-104
Ahg914231 jgi|Araly1|914231|Al_scaffold_0001_4485 124 2e-27
> Ahg474178 jgi|Araly1|474178|fgenesh2_kg.1__4132__AT1G50500.1
Length=2858
Score = 972 bits (526), Expect = 0.0
Identities = 839/988 (85%), Gaps = 30/988 (3%)
Strand=Plus/Plus
Query 1 ATGGACAAATCGAGTGGTTTGGA-TTTCATCAACCAGATGTTCCCAGTAGAAGCTTCTCT 59
||||| || ||||||| ||| || | | |||||||||||||||||| ||| || || ||
Sbjct 160 ATGGATAAGTCGAGTGCTTTAGAGTAT-ATCAACCAGATGTTCCCAACAGAGGCATCACT 218
Query 60 ATCTTGTGTTGAGTCTTTTATGCAAAAGATT-TGTGACGAGATTCGGCGAGTTGATGCTA 118
||| | |||||| | |||||||||||||| | | ||||||||||| ||||||||||
Sbjct 219 TTCTGGCGTTGAGCCCCTTATGCAAAAGATTCAG-GGTGAGATTCGGCGGGTTGATGCTA 277
Query 119 CCATTTTAGCTGTTGTTAGTCAACAGGGTAACTCCGGAACTAGAGCTAAAGAAAATCTTA 178
||| | ||| |||| |||||||| ||||||| ||||||| |||||||||| |||||
Sbjct 278 GCATACTCTCTGCTGTTCGTCAACAGAGTAACTCTGGAACTAAAGCTAAAGAAGATCTTG 337
Query 179 ATGATGCCATATGTGCTGCGGAGGAACTCTCTCATAAGATACAAGAGATAAAATCAAAAG 238
|||||| | | |||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 338 CTGATGCTACACGTGCTGTGGAGGAACTCTCTCATAAGATTCAAGAGATAAAATCCAAAG 397
Query 239 CCGAACAAACCGAAGCAATGGTCCAAGACATATGCAGCGACATTAAAAAGTTAGATTTTG 298
| || |||| ||||| ||||| ||||| |||||| | |||||||| |||||||||||||
Sbjct 398 CTGAGCAAAGTGAAGCGATGGTTCAAGAAATATGCCGTGACATTAAGAAGTTAGATTTTG 457
Query 299 CAAAGAAGAACATAACCACGGCGGTCACTGCTCTT-AGTCGCCTCACAATGTTAGTGTCT 357
|||||||||||||||||||| | ||||||| ||| | |||||||||||||||||| |||
Sbjct 458 CAAAGAAGAACATAACCACGACCATCACTGCCCTTCA-TCGCCTCACAATGTTAGTCTCT 516
Query 358 GCTGTTCAACAGCTTCAGGTGATGACGTCAAAAAGGCAATACAAGGAGGCAGCTACGCAG 417
|||||| ||||||||||||||||| |||||||||| |||||||||||||||||| | |||
Sbjct 517 GCTGTTGAACAGCTTCAGGTGATGGCGTCAAAAAGACAATACAAGGAGGCAGCTGCACAG 576
Query 418 CTGGAGGC-GATAAACGAACTATGTAATCA-TTTCAAAGCATACATGGATCTTCCTAAAA 475
|||||||| | ||||| || ||||||| || ||| ||||||||| |||| |||||||||
Sbjct 577 CTGGAGGCTG-TAAACCAATTATGTAACCACTTT-GAAGCATACAGGGATGTTCCTAAAA 634
Query 476 TTATGGAGCTCAGAGAAAAACTTAAGAATATAAAACAAAT-TTTAAAGTTCCATGTATTT 534
| | ||||||||||||||| ||||| |||||||| ||||| || |||| ||||||||||
Sbjct 635 TCACGGAGCTCAGAGAAAAGCTTAATAATATAAAGCAAATCCTT-AAGTCCCATGTATTT 693
Query 535 TCTGATTTTTCCAGCTTAGGTACTGGGACAGAGACAGAGGAATTGTTTTTGCTAAAGAAG 594
|| ||||||| ||| ||||||||||||| ||||||||||||| ||||||| |||||
Sbjct 694 TCGGATTTTTTCAGTTTAGGTACTGGGAAAGAGACAGAGGAAACAAATTTGCTACAGAAG 753
Query 595 TTATCTGATTCTTGCTTGGTTGTTGATGCTCTGGAGCCATCTGTGAGGGAAGAGTTGATA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 754 TTATCTGATTCTTGCTTGGTTGTTGATGCTCTGGAGCCATCTGTGAGGGAAGAGTTGGTA 813
Query 655 AACAACTTTTGCAGCAGGGAGCTAACCTCATATGAACAAATTTATGTAGGAGCTGAACTG 714
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||
Sbjct 814 AACAACTTTTGCAGCAGGGAGCTCACCTCATATGAACAAATTTTTGAAGGAGCTGAATTG 873
Query 715 A-AAACGTTGGATGAA-ATAGAGCTGA--TATACAATCAGCTAA-GTTGTCTAATCCGCA 769
||| ||||||| || | ||||| || ||| | | | ||| | ||| |||||| |
Sbjct 874 GCAAA-GTTGGAT-AAGACAGAGCGGAGGTATGCT-TG-GATAAAGC-GTCGAATCCG-A 927
Query 770 A-AAATCAAGGAAAGT-GGACGATTTTTCCTGCTTCATGGCATGTGCCTTATAGACTATG 827
| |||| ||| ||| | ||| ||||||||||||||| ||||||||||| ||||| |||||
Sbjct 928 ACAAATGAAG-AAATTTGGAAGATTTTTCCTGCTTCTTGGCATGTGCCGTATAGGCTATG 986
Query 828 CATCCAGTTGAGCAGGAAAACAAGGGTGCAAGTAGAATCTATTCTGGTCAACCTGAAAGA 887
||||||||| ||| | |||||||| ||||||||||||||||||||||||| |||||||
Sbjct 987 CATCCAGTTCTGCAAGCAAACAAGGAAGCAAGTAGAATCTATTCTGGTCAACATGAAAGA 1046
Query 888 GAAGTCAGATGTAGAAAAATTGCTTCTGGAACTGA-AAAGGAC-GCTAGAGTTTGAAAGG 945
|||| ||| ||||| | ||||||||||| ||| | ||||||| | | ||||||||||
Sbjct 1047 GAAGCCAGTTGTAGCGATATTGCTTCTGGCACT-ACAAAGGACAG-TGGAGTTTGAAAAA 1104
Query 946 GAACTTGAAATGAAATTTGGTGGTGGTG 973
|||||||||| |||||||||||||||||
Sbjct 1105 GAACTTGAAAAGAAATTTGGTGGTGGTG 1132
> Ahg923562 jgi|Araly1|923562|scaffold_104843.1
Length=1519
Score = 741 bits (401), Expect = 0.0
Identities = 536/595 (90%), Gaps = 34/595 (6%)
Strand=Plus/Plus
Query 437 TATGTAATCATTTCAAAGCATACATGGATCTTCCTAAAATTATGGAGCTCAGAGAAAAAC 496
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TATGTAATCATTTCGAAGCATACATGGATGTTCCTAAAATTATGGAGCTCAGAGAAAAAA 60
Query 497 TTAAGAATATAAAACAAATTTTAAAGTTCCATGTATTTTCTGATTTTTCCAGCTTAGGTA 556
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTAAGAATATAAAACAAATTTTAAAGTCCCATGTATTTTCTGATTTTTCCAGCTTAGGTA 120
Query 557 CTGGGACAGAGACAGAGGAA-TTGTTTTTGCTAAAGAAGTTATCTGATTCTTGCTTGGTT 615
|||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 121 CTGGGACAAAGACAGAGGAAATT-TTTTTGCTAAAGAATTTATCTGATTCTTGCTTGGTT 179
Query 616 GTTGATGCTCTGGAGCCATCTGTGAGGGAAGAGTTGATAAACAACTTTTGCAGCAGGGAG 675
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 ATTGATGCTCCGGGGCCATCTGTGAGGGAAGAGTTGGTAAACAACTTTTGCAGCAGGGAG 239
Query 676 CTAACCTCATATGAACAAATTTATGTAGGAGCTGAACTGAAAACGTTGGATGAAATAGAG 735
|| |||||||||||||||||||||||||||||||| | || | || | ||
Sbjct 240 CTCACCTCATATGAACAAATTTATGTAGGAGCTGA---G----CG--G-AT-A--TA--- 283
Query 736 CTGATATACAATCAGCTAAGTTGTCTAATCCGCAA-AAATCAAGGAAAGTGGACGATTTT 794
| | || | | | || ||||||||| || || |||||||| ||| |||||||||||
Sbjct 284 C--A-AT-CGGTTA---AA-TTGTCTAATTCG-AACAAATCAAGAAAAATGGACGATTTT 334
Query 795 TCCTGCTTCATGGCATGTGCCTTATAGACTATGCATCCAGTTGAGCAGGAAAACAAGGGT 854
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 335 TCCTGCTTCATGGCATGTGCCTTATAGACTATGCATCCAGTTGTGCAACAAAACAAGGGT 394
Query 855 GCAAGTAGAATCTATTCTGGTCAACCTGAAAGAGAAGTCAGATGTAGAAAAATTGCTTCT 914
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 395 GCAAGTAGAATCTATTCTAGTCAACCTGAAAGAGAAGCCAGATGTAGAAAAATTGCTTCT 454
Query 915 GGAACTGAAAAGGACGCTAGAGTTTGAAAGGGAACTTGAAATGAAATTTGGTGGTGGTGG 974
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 455 GGAACTGAAAAGGACGCTAGAGTTTGAAATGGAACTTGAAATGAAATTTGTTGGTGGTGG 514
Query 975 GAGTATCGGAGATGACA-TAA-----TTGGTGGAGGGGGAAATAATAGTCAGAAA 1023
|||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 515 GAGTTTCGGAGATGACACTAAGGAAATTGGTGGAGGGGGAAATAATAGTCAGAAA 569
Score = 372 bits (201), Expect = 5e-102
Identities = 361/432 (84%), Gaps = 36/432 (8%)
Strand=Plus/Plus
Query 1279 ACTGCAACTGCGAGCTATGTCAAACTTGTGAACCATCAAATGAAAAGAGCTGAAGCAGTC 1338
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1104 ACTCCAACTGCGAGCTATGTCGAATTTGTGAACCATCAAATGAAAAGAGCTGAAGCAGTC 1163
Query 1339 CTAAAGGTCATAGCATCCCCAATCGTCACAGTGATAGACACTTATCGTGCACTGTTTCCA 1398
|||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1164 CTAAAGGTCATAACATCCCCAATCGTCTCAGTGGTAGACACTTATTGTGCACTGTTTCCA 1223
Query 1399 GAAGAAACACCAATGGAGTTTCAACGCATCTTGGTACTTAAGGGTCTTACGAAAGCTGAG 1458
|||| ||||||||||||||||||||||||||||| ||||||| || || || ||
Sbjct 1224 GAAGGAACACCAATGGAGTTTCAACGCATCTTGGAACTTAAG---CT---GA--GC--AG 1273
Query 1459 CAGCAGAGTATACTTGATGATTTCAACAATCATAGCTCAAGAATCACACAACTCTCGGTT 1518
| ||||||||||||||||||||||||||| || | | ||
Sbjct 1274 -A--AGAGTATACTTGATGATTTCAACAATC----CT---G---------------G-TT 1307
Query 1519 GCAGCGAAAACGCCAGAAGCACATGCACTGCCACTTGCACTCACTAATGTGGCTCCAGCT 1578
|||||| || ||||||||||| ||||| |||||| ||| || ||||| || | |||||
Sbjct 1308 GCAGCGGCAATGCCAGAAGCACCTGCACCGCCACTGGCAGTCGCTAATCCGGGTGCAGCT 1367
Query 1579 GTCCGGTTTAAAGCAAACAGTGAGGAAGTGTTAACCAGAGCAGCTTCAGCTGCAACCACT 1638
|| |||| | |||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct 1368 GTTGGGTTCATAGCAAACAGTGAGGAAGTGTTAACCACAGCCGCTGAAGCTGCAACCACT 1427
Query 1639 AGCTTCATGAAGTTATATGCTCTTACTGGAGCTGCCAAAGACCGTCCCTTCAGGAAACTC 1698
|||||||||||||||||| || |||||| | | |||||||||||||||||||||||||||
Sbjct 1428 AGCTTCATGAAGTTATATTCTGTTACTGAAACGGCCAAAGACCGTCCCTTCAGGAAACTC 1487
Query 1699 TTCAATCCATGA 1710
|||||| |||||
Sbjct 1488 TTCAATGCATGA 1499
Score = 100 bits (54), Expect = 3e-20
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1189 ATGTTGCTAGATGCGCATGATATGAAGATGATTCTTTTAAAAGTTCCATCTCTTGCCAGA 1248
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1041 ATGTTGCTAGATGCGCACGATATGAAGATGATAGTTTTAAAAGTTCCATCTCTTGCCAGA 1100
Query 1249 CAG 1251
|||
Sbjct 1101 CAG 1103
> Ahg337252 jgi|Araly1|337252|fgenesh1_pg.C_scaffold_1003817
Length=1683
Score = 379 bits (205), Expect = 3e-104
Identities = 304/350 (87%), Gaps = 14/350 (4%)
Strand=Plus/Plus
Query 631 CCATCTGTGAGGGAAGAGTTGATAAACAACTTTTGCAGCAGGGAGCTAACCTCATATGAA 690
||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct 127 CCATCTGTGAGGGAAGAGTTGGTAACCAACTTTTGCAGCAGGGAGCTTACCTCATATGAA 186
Query 691 C-AAA-TTTATGTAGGAGCTGAACTGA-AAACGTTGGATGAAATAGAGCTGATATACAAT 747
| ||| ||| | ||||||||||| ||| ||| ||||||||||||| ||| ||||||||||
Sbjct 187 CAAAAGTTT-T-TAGGAGCTGAATTGACAAA-GTTGGATGAAATACAGCGGATATACAAT 243
Query 748 CAGCTAAGTTGTCTA-ATCCGCAA-AAATCAAGGAAA-GTGGACGATTTTTCCTGCTTCA 804
||| ||| ||||| | ||||| || ||||||| |||| |||| |||||||||||||||
Sbjct 244 CAGATAAATTGTC-ATATCCG-AACAAATCAA-GAAATTTGGAAGATTTTTCCTGCTTCG 300
Query 805 TGGCATGTGCCTTATAGACTATGCATCCAGTTGAGCAGGAAAACAAGGGTGCAAGTAGAA 864
||||||||||||||| |||| |||||| || || ||| || |||||||| |||||||||
Sbjct 301 TGGCATGTGCCTTATGGACTGTGCATCAAGATGTGCAAGATAACAAGGGACCAAGTAGAA 360
Query 865 TCTATTCTGGTCAACCTGAAAGAGAAGTCAGA-TGTAGAAAAATTGCTTCTGGAACTGAA 923
|||||| |||| ||| ||||||||||| || | ||||| | |||||||| |||||||||
Sbjct 361 TCTATTATGGTTAACATGAAAGAGAAGCCA-ACTGTAGCGAGATTGCTTCAGGAACTGAA 419
Query 924 AAGGACGCTAGAGTTTGAAAGGGAACTTGAAATGAAATTTGGTGGTGGTG 973
|||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 420 AAGGACGCTAAATTTTGAACTGGAACTTGAAATGAAATTTGGTGGTGGTG 469
> Ahg914231 jgi|Araly1|914231|Al_scaffold_0001_4485
Length=1743
Score = 124 bits (67), Expect = 2e-27
Identities = 114/134 (85%), Gaps = 13/134 (10%)
Strand=Plus/Plus
Query 1024 TTTAACTTCCGTGGAATGATATCTTCTTGCTTCGAGCCTCATTTAACCATATATATTGAG 1083
||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 667 TTTAACTTCCGTGGAATTATCTCTTCTTGCTTCGAGCCTCATTTAACCAAATATATTGAG 726
Query 1084 AAGGAAGAGATGGAACTTATGCAACT-CCTGGAGAA-AGTTGTGCAGGAGGAAACATGGG 1141
| | | || | || |||||| | |||||| || |||||| ||||||||||||||||
Sbjct 727 --G-A-G-GA---A-CTAATGCAA-TGCCTGGA-AAGAGTTGTTCAGGAGGAAACATGGG 775
Query 1142 ATATTGAGGAGGAA 1155
||| ||| ||||||
Sbjct 776 ATACTGATGAGGAA 789
Score = 84.2 bits (45), Expect = 3e-15
Identities = 58/64 (91%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 1189 ATGTTGCTAGATGCGCATG-ATATGAAGATGATTCTTTTAAAAGTTCCATCTCTTGCCAG 1247
|||||||||||| |||| | | ||| |||||||||||||||||||||||||||||| |||
Sbjct 1429 ATGTTGCTAGATACGCAAGCA-ATGGAGATGATTCTTTTAAAAGTTCCATCTCTTGACAG 1487
Query 1248 ACAG 1251
||||
Sbjct 1488 ACAG 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5