BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50990.1
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923563 jgi|Araly1|923563|scaffold_104844.1 2521 0.0
> Ahg923563 jgi|Araly1|923563|scaffold_104844.1
Length=1564
Score = 2521 bits (1365), Expect = 0.0
Identities = 1473/1526 (97%), Gaps = 4/1526 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTGTTGTCAATCGTCATTCTTGAAACCGTCGTCATTGCATGACAAGAAAATCACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 21 ATGGGTTGTTGTCAATCGTCATTCTTGAAACCGTCGTCATTGCATGACAAGAAAATCCCC 80
Query 61 TCCGACGAT-TTATCCGGCCGCCGTGGAAAAGGAGCCAAACGTGGTAATCGCCACCGTCA 119
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 81 TCCGACGATATT-TCCGGCCGCCGTGGAAAAGGAGCCAAACGCGGTAATCGCCACCGTCA 139
Query 120 TGCTAACATTAATGAAGGCAGGGGATGGCATTTTTCCGACGTGCCAGACTTCTCCGAGTT 179
| ||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 140 TCCTAACGTTAATGAAGGCAGGGGATGGCTTTTTTCCGCCGTGCCGGACTTCTCCGAGTT 199
Query 180 CTCGGCATCGGTTCTTCGTGACGCTACAAATAATTTCAACAAAAACGCTGTCGTATCAGT 239
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 200 CTCGGCATCGGTTCTTCGTGACGCTACGAACAATTTCAACAAAAACGCTGTCGTATCGGT 259
Query 240 TTGTTCTGATCAAGAACCAAACCTTGTTTACCAAGGCTGCATTAGGAGCGACAAAGATAA 299
|||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||
Sbjct 260 TTGTTCTGATCAAGAACCAAACGTTGTTTATCAAGGCTGCATTAAGAGTGACAAAGATAA 319
Query 300 ACGTCTTATTGCCGTTAAAAAATTCTCCAAAACAACATGGCCTGATCCTAAACAATTCGC 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACGTCTTATCGCCGTTAAAAAATTCTCCAAAACAACATGGCCTGATCCTAAACAATTCGC 379
Query 360 TACAGAAGCTCGGGCTATCGGCAGTTTGAGGCATGTAAGACTAGTGAATTTGATAGGTTA 419
| ||||||| ||||||||||| | ||||||||| |||||||| |||||||||||||||||
Sbjct 380 TGCAGAAGCGCGGGCTATCGGGAATTTGAGGCACGTAAGACTGGTGAATTTGATAGGTTA 439
Query 420 TTGTTGTGAAGGAGATGAAAGGTTGCTTGTATCGGAGTACATGCCTAATGAAAGCCTAAC 479
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 440 TTGTTGTGATGGAGATGAAAGGTTGCTTGTATCGGAGTACATGCCTAATCAAAGCCTAAC 499
Query 480 CAAACATCTATTTCATTGGGAGAAACAAACCATGGAATGGGCTATGCGATTGAGAGTTGC 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 500 CAAACATCTATTTCATTGGGAGAAACAAACCATGGAGTGGGCTATGCGATTGAGAGTTGC 559
Query 540 ACTTTATGTAGCTGAAGCTTTAGAATATTGTAGGCAGAGTGGACTCAAATTGTACCATGA 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 560 ACTTTATGTAGCTGAAGCTTTAGAATATTGTAGACAGAGTGGACTCAAATTGTACCATGA 619
Query 600 TCTCAATACTTGTCGGGTTCTCTTTGATGAGAATGGAAGTCCTCGGCTTTCATGTTTTGG 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TCTCAATACTTGTAGGGTTCTCTTTGATGAGAATGGAAGTCCTCGGCTTTCATGTTTTGG 679
Query 660 ATGGATGAAAAATAGCAAAGATGGCAAGAACTTCAGCACAAATCTTGCTTATACACCGCC 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 680 ATGGATGAAAAATAGCAAAGATGGCAAAAACTTCAGCACAAATCTTGCTTATACACCGCC 739
Query 720 CGAATATCTTAGAAGTGGTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CGAATATCTTAGAAGTGGTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTT 799
Query 780 TCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATGCGGTTGGTACAATTCA 839
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 800 TCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATGCGGTCGATACAATTCA 859
Query 840 AAAGCAAAACTTAAATGTCTTGATGGATTCACATTTAGAAGGAAACTATCCTGAGGAAGA 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 AAAGCAAAACTTAATTGTCTTGATGGATTCACATTTAGAAGGAAACTATCCTGAGGAAGA 919
Query 900 CGCAGCCATGGTGTTTGATTTGGCTTCCAAATGCCTTCACAATAACCCTAATGAACGGCC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CGCAGCCATGGTGTTTGATTTGGCTTCCAAATGCCTTCACAATAACCCTAATGAACGGCC 979
Query 960 AGAAATTGGAGATATCATCTCAGTTATCACTACACTTCAACAAAAACTAGATGTTCCGTC 1019
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 980 AGAAATTAGAGATATTATCTCAGTTATCGCTACACTTCAACAAAAACTAGATGTTCCGTC 1039
Query 1020 CTATACTATGCTTGGAATTTCAAAACTTGAAAAGCTTGAAATGGAACACCCGAAATCTTT 1079
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1040 CTATACTATGCTTGGCATTTCAAAACTTGAAAAGCTTGAAATGGAACGCCCGAAATCTTT 1099
Query 1080 AATTTACGATGCATGTCACCAAATGGACCTTGCAGCTCTTCATCAAATTCTTGAAGCAAT 1139
||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct 1100 AATTTACGATGCATGTCACCAAAAGGACCTTGAAGCTCTTCATCAGATTCTTGAAGCAAT 1159
Query 1140 GGAGTACAAAGAAGATGAAGTTACTTGTGAGCTCTCTTTCCAGCAATGGGCTCAACAGAT 1199
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1160 GGAGTACAAAGAAGATGAAGTTACTTGCGAGCTCTCTTTCCAGCAATGGGCTCAACAGAT 1219
Query 1200 AAAAGATGTGTGCAACACTAGACAACAAGGCGATTCGGCTTTTCGGAACAAACATTTCGA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1220 AAAAGATGTGTGCAACACTAGACAACAAGGCGATTCGGCTTTTCGGAACAAAAATTTCGA 1279
Query 1260 ATCTGCTATTGATAAATATACTCAGTTCATAGAAATAGGAATCATGATCTCTCCCACTGT 1319
||||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1280 ATCTGCTATCGAAAAATATACTCAGTTCATAGAAACAGGAATCATGATCTCTCCTACTGT 1339
Query 1320 TTATGCACGAAGAAGCATGTGCTATCTCTTCTGCGACCAACCAGATGCAGCACTTCGAGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TTATGCACGAAGAAGCATGTGCTATCTCTTCTGCGACCAACCAGATGCAGCACTTCGAGA 1399
Query 1380 CGCGATGCAAGCACAATGTGTCTATTCGGACTGGCCAACTGCATTTTACCTTCAGGCCGT 1439
||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 1400 CGCGATGCAAGCACAATGTGTTTACTCCGACTGGCCAACTGCATTTTACCTTCAGGCAGT 1459
Query 1440 GGCTCTTTCCAAA-CTGAATATGGTCGAAGATTCAGCTACCATGCTAAAAGAAGCCTTGA 1498
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1460 GGCTCTTTC-AAAGCTGAATATGGTCGAAGATTCAGCTAACATGCTAAAAGAAGCCTTGA 1518
Query 1499 TCTTGGAAGATAAGAGAGGCTCATAA 1524
||||||||||||||||||||||||||
Sbjct 1519 TCTTGGAAGATAAGAGAGGCTCATAA 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57059187010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5