BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51010.1

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314474 jgi|Araly1|314474|fgenesh1_pm.C_scaffold_1003254           274    2e-73


> Ahg314474 jgi|Araly1|314474|fgenesh1_pm.C_scaffold_1003254
Length=381

 Score =  274 bits (148),  Expect = 2e-73
 Identities = 195/217 (90%), Gaps = 5/217 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTAATGTTGGAAACACTAGTGAGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATC  60
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATT  60

Query  61   ACGCAGATGAATGATGAAATTCAGAACCTCGTGAGGGAGAACGCGCAACTTAATCATCCA  120
            |||||| |||| ||||||||| ||||||||||||||||| ||| || |||||||||| ||
Sbjct  61   ACGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGACGGGCTACTTAATCATTCA  120

Query  121  ATTGGGCGACCTTATTTTGATGCCATTGAAGAAGTC-AGGAAGAAGCTAAATGATaagag  179
            ||||| |||||| |||||| |||||||||| ||||| | ||||||||||| |||||||||
Sbjct  121  ATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAAGAAGCTAACTGATAAGAG  179

Query  180  aatgaagttgcaagagctctatgagaagaagaaagaa  216
            |||||||||| |||| || |  ||||||| |||||||
Sbjct  180  AATGAAGTTGGAAGAACT-T--GAGAAGAGGAAAGAA  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8630546986


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5