BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51010.1 Length=249 Score E Sequences producing significant alignments: (Bits) Value Ahg314474 jgi|Araly1|314474|fgenesh1_pm.C_scaffold_1003254 274 2e-73 > Ahg314474 jgi|Araly1|314474|fgenesh1_pm.C_scaffold_1003254 Length=381 Score = 274 bits (148), Expect = 2e-73 Identities = 195/217 (90%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 1 ATGGCTAATGTTGGAAACACTAGTGAGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATC 60 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATT 60 Query 61 ACGCAGATGAATGATGAAATTCAGAACCTCGTGAGGGAGAACGCGCAACTTAATCATCCA 120 |||||| |||| ||||||||| ||||||||||||||||| ||| || |||||||||| || Sbjct 61 ACGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGACGGGCTACTTAATCATTCA 120 Query 121 ATTGGGCGACCTTATTTTGATGCCATTGAAGAAGTC-AGGAAGAAGCTAAATGATaagag 179 ||||| |||||| |||||| |||||||||| ||||| | ||||||||||| ||||||||| Sbjct 121 ATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAAGAAGCTAACTGATAAGAG 179 Query 180 aatgaagttgcaagagctctatgagaagaagaaagaa 216 |||||||||| |||| || | ||||||| ||||||| Sbjct 180 AATGAAGTTGGAAGAACT-T--GAGAAGAGGAAAGAA 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8630546986 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5