BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51020.1
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314474 jgi|Araly1|314474|fgenesh1_pm.C_scaffold_1003254 243 2e-63
Ahg923569 jgi|Araly1|923569|scaffold_104850.1 158 7e-38
Ahg923570 jgi|Araly1|923570|scaffold_104851.1 119 3e-26
Ahg923567 jgi|Araly1|923567|scaffold_104848.1 111 5e-24
> Ahg314474 jgi|Araly1|314474|fgenesh1_pm.C_scaffold_1003254
Length=381
Score = 243 bits (131), Expect = 2e-63
Identities = 185/209 (89%), Gaps = 11/209 (5%)
Strand=Plus/Plus
Query 185 ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCCTTTTGAAGAGCTGTGTCTTGAAATC 244
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAAT- 59
Query 245 TT-GAATTTGAACGATGAAATTCAGAACCTCGTGAGGGAG-ATCGCGC-ATCTTAATCAT 301
| | | |||| ||||||||| ||||||||||||||||| | || || | |||||||||
Sbjct 60 TACGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGA-CGGGCTA-CTTAATCAT 117
Query 302 CCAATTGGTCGACCTGATTTTGGTGCCATTGAAGAAG-CCA-GAAAGAAGCTAACTGATa 359
|||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||
Sbjct 118 TCAATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAA-GAAGCTAACTGATA 175
Query 360 agagaatgaagttgcaagagctctgtgaa 388
|||||||||||||| |||| || || |||
Sbjct 176 AGAGAATGAAGTTGGAAGAACT-TGAGAA 203
> Ahg923569 jgi|Araly1|923569|scaffold_104850.1
Length=259
Score = 158 bits (85), Expect = 7e-38
Identities = 122/140 (87%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 315 CTGATTTTGGTGCCATTGAAGAAGCCAGAAAGAAGCTAACTGATaagaga-atgaagttg 373
|||||| || ||||||||||||||| | |||||| ||||||||| || | | |||||||
Sbjct 121 CTGATTGTGTTGCCATTGAAGAAGCAATTAAGAAGTTAACTGATATGA-ACACGAAGTTG 179
Query 374 caagagctctgtgaaaagaagagagaagttatgaaggagaagaaggaaACCCCACAGTGA 433
||||||||||||| |||| || |||| | ||||||||| |||||||||||||||||||
Sbjct 180 AAAGAGCTCTGTGAGAAGATGAAAGAAACTGTGAAGGAGACGAAGGAAACCCCACAGTGA 239
Query 434 TAGGTTACTTTTACTTTTCC 453
||||||||||||||||||||
Sbjct 240 TAGGTTACTTTTACTTTTCC 259
> Ahg923570 jgi|Araly1|923570|scaffold_104851.1
Length=257
Score = 119 bits (64), Expect = 3e-26
Identities = 97/113 (86%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 162 GTTTGAAATCTTTGCGTAAACAAATGGCTAATGTTGGAAACACTAGTGGGTCTACTCCTT 221
|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GTTTGAAATCTTTGTG-AAA-AAATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTT 58
Query 222 TTGAAGAGCTGTGTCTTGAAATCTTGAATTTGAACGATGAAATTCAGAACCTC 274
|||||||| | |||| |||||| | | | || |||||||||||||| |||
Sbjct 59 TTGAAGAGGTATGTCGTGAAATGACGCAGCTAAATGATGAAATTCAGAAGCTC 111
> Ahg923567 jgi|Araly1|923567|scaffold_104848.1
Length=301
Score = 111 bits (60), Expect = 5e-24
Identities = 96/113 (85%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 162 GTTTGAAATCTTTGCGTAAACAAATGGCTAATGTTGGAAACACTAGTGGGTCTACTCCTT 221
||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GTTTGAAATCTTT--GTGAA-AAATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTT 57
Query 222 TTGAAGAGCTGTGTCTTGAAATCTTGAATTTGAACGATGAAATTCAGAACCTC 274
|||||||| | |||| |||||| | | | || |||||||||||||| |||
Sbjct 58 TTGAAGAGGTATGTCGTGAAATGACGCAGCTAAATGATGAAATTCAGAAGCTC 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26457304398
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5