BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51055.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914229 jgi|Araly1|914229|Al_scaffold_0001_4483                    592    1e-168


> Ahg914229 jgi|Araly1|914229|Al_scaffold_0001_4483
Length=783

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 390/424 (92%), Gaps = 4/424 (1%)
 Strand=Plus/Plus

Query  65   AGAATCCGGATCCGTATCCTCCTACTGGGACTTCCTTAGTCTATCTTGACCATCTGGAGC  124
            ||| ||||||| |||||| |||||||||||||||||| || | |||||||||||| ||||
Sbjct  362  AGACTCCGGATTCGTATCTTCCTACTGGGACTTCCTTCGTATTTCTTGACCATCTAGAGC  421

Query  125  TATGTTTATGTTCTACGGAGTGGTGGAACTTACTTACCTGTATACTCGATGATGCTCCAA  184
            |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct  422  TATGTTTATGTTCTACGGAGTGGTGGAACTTACTGACCTGTATACTCGTTGATGCTCCGA  481

Query  185  AACTTCGAGTTCTCAAGCTCAAATTGTATCGAAAACATTGTGTC-GAGTACAACGA-GTC  242
            |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || 
Sbjct  482  AACTTCGAGTTCTCAAGCTCAAATTGTATCGAAAACATTGTGTCCG-GTACAACGATGT-  539

Query  243  GATGGAACCATGGAAGCAACCAGATTATGTTCCCATATGTTTATCATCATATCTTGAGAT  302
            |||||| | |||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  540  GATGGATCAATGGAACCAACCAGACTATGTTCCCATGTGTTTATCATCATATCTTGAGAT  599

Query  303  ATTTGAGTGGAGGCAATACAATGGTGAAGAGCAAGAGAGAGAAGTTGCAAAGTACATTCT  362
             |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct  600  CTTTGAGTGGAGGCAATACAACGGTAAAGAGAAAGAGAGAGAAGTTGCAAAGTACATTCT  659

Query  363  AGAAAACGCGAGTCGTCTAAAGAAGGCGATATTCTACTTAGAATCTGCAGAAAAGCATGG  422
            || |||||||||||||||||||||||||| |||||||| |||||||| ||| ||| ||||
Sbjct  660  AGCAAACGCGAGTCGTCTAAAGAAGGCGACATTCTACTCAGAATCTGGAGAGAAGGATGG  719

Query  423  GATATTGAAGGAGTTAGAATGTATGGCCAGAGGTTCAAAGAAATGCCAGCTTGTGTTTGA  482
            ||||||||| |||||||||| ||||||||||||||||| || |||| |||||||||||||
Sbjct  720  GATATTGAAAGAGTTAGAATATATGGCCAGAGGTTCAACGACATGCAAGCTTGTGTTTGA  779

Query  483  TTAA  486
            ||||
Sbjct  780  TTAA  783



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5