BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51060.1
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1 761 0.0
Ahg930013 jgi|Araly1|930013|scaffold_302470.1 473 6e-133
> Ahg474223 jgi|Araly1|474223|fgenesh2_kg.1__4177__AT1G51060.1
Length=581
Score = 761 bits (412), Expect = 0.0
Identities = 455/476 (96%), Gaps = 1/476 (0%)
Strand=Plus/Plus
Query 12 AATTCGATTCTTATAACTGTTTCCCTCTCATCTTTACACAAAAGTATTCTAATCGATTTC 71
||||| |||| || |||| |||||||||||||||| |||||||| |||| ||||||||||
Sbjct 2 AATTCAATTCGTACAACTTTTTCCCTCTCATCTTTTCACAAAAGAATTCGAATCGATTTC 61
Query 72 AATGGCGGGTCGTGGTAAAACACTCGGATCTGGGTCTGCGAAGAAGGCAACAACAAGAAG 131
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 62 AATGGCGGGTCGTGGCAAAACTCTCGGATCTGGATCTGCGAAGAAGGCAACAACAAGAAG 121
Query 132 CAGCAAAGCCGGTCTCCAATTCCCTGTGGGTCGTATCGCTCGTTTCTTGAAGAAAGGCAA 191
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 122 CAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCGTTTCTTGAAGAAAGGCAA 181
Query 192 ATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATACGCCGAACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATACCT 241
Query 252 CGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCGAGGGATAACAAGAAGACGAGGAT 311
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 242 CGCCGCCGAGGTTTTGGAATTGGCTGGAAACGCAGCGAGAGATAACAAGAAGACAAGGAT 301
Query 312 TGTTCCAAGGCATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCTTGG 371
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGTTCCGAGGCATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCTTGG 361
Query 372 AGATGTGACTATTGCTAATGGAGGTGTGATGCCTAACATTCACAATCTTCTTCTTCCTAA 431
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGATGTGACTATTGCTAATGGTGGTGTGATGCCTAACATTCACAATCTTCTTCTTCCTAA 421
Query 432 GAAGACCGGTGCTTCCAAGCCATCTGCTGAAGACGATTGATTAA-TCAACCAAATC 486
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 422 GAAGACTGGTGCTTCCAAGCCATCTGCTGAAGACGATTGATTAAGTCAACCAAATC 477
Score = 141 bits (76), Expect = 6e-33
Identities = 97/106 (92%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 526 AGTAATTTAGATTAGATCTATGGTGAAG-A-AAGAATCTATCTTCTGTGTTTT-TTGAAT 582
|||||||||||||||||||||||||||| | ||||||||||||| |||||||| || |
Sbjct 478 AGTAATTTAGATTAGATCTATGGTGAAGAAGAAGAATCTATCTTTTGTGTTTTCTT-TTT 536
Query 583 TGAATTGAATGTTCATATGCTTTCAATTTCTTATGGAATCAAGATT 628
| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 TCAATTGAATGTTCATATGC-TTCAATTTCTTATGGAATCAAGATT 581
> Ahg930013 jgi|Araly1|930013|scaffold_302470.1
Length=441
Score = 473 bits (256), Expect = 6e-133
Identities = 358/407 (88%), Gaps = 7/407 (2%)
Strand=Plus/Plus
Query 72 AATGGCGGGTCGTGGTAAAACACTCGGATCTGG-GTCTGCGAAGAAGGCAACAACAAGAA 130
|||||| |||||||| ||||| ||||||||||| || ||| |||||| ||||| | ||||
Sbjct 21 AATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGT-TGCTAAGAAGTCAACATCGAGAA 79
Query 131 GCAGCAAAGCCGGTCTCCAATTCCCTGTGGGTCGTATCGCTCG-TTTCTTGAAGAAAGGC 189
||||||||||||||||||||||||| || ||||| |||||||| |||| ||||||| |||
Sbjct 80 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTCGTTTTC-TGAAGAACGGC 138
Query 190 AAATACGCCGA-ACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 248
|| |||| | | |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 139 AAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTCTACTTAGCCGCTGTTCTCGAATA 197
Query 249 CCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCGAGGGATAACAAGAAGACGAG 308
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 198 CCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGGATAACAAGAAGACTAG 257
Query 309 GATTGTTCCAAGGCATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCT 368
|||||| ||| | || ||||| | ||||||||||| ||||| || |||| || |||||
Sbjct 258 GATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGGAGCTGAGTAAGTTGCT 317
Query 369 TGGAGATGTGACTATTGCTAATGGAGGTGTGATGCCTAACATTCACAATCTTCTTCTTCC 428
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 318 TGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTCC 377
Query 429 TAAGAAGACCGGTGCTTCCAAGCCATCTGCTGAAGACGATT-GATTA 474
|||||| | ||||||||||| || || ||||| || || | |||||
Sbjct 378 CAAGAAGGCTGGTGCTTCCAAACCTTCCGCTGATGAAGACTAGATTA 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24741773133
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5