BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51080.1
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923582 jgi|Araly1|923582|scaffold_104863.1 1349 0.0
Ahg477705 jgi|Araly1|477705|fgenesh2_kg.3__406__AT1G51080.1 294 7e-79
> Ahg923582 jgi|Araly1|923582|scaffold_104863.1
Length=908
Score = 1349 bits (730), Expect = 0.0
Identities = 844/896 (94%), Gaps = 20/896 (2%)
Strand=Plus/Plus
Query 1 GGGGACACAACAATGAGTTTCTCGGTGGTCTTGTTCCACAGTCCTCACTCTGCTGCAGTA 60
|||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||
Sbjct 9 GGGGACACAACAATGAGTTTCTCGGTGGTCTTGTTCCACAATCCTCA--CT-CTGCAATA 65
Query 61 ACAACAAAAACCATCTTCAGAA--TC-TCATCATCATCATCTTTCAGACCAAGAAGAAAT 117
|||| || ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 66 ACAAGAACAACCATCTTCACAATCTCATCATCATCATCATCTTTCAGACCAAGAAGAAAT 125
Query 118 CTTTCTTCATCTAATGGTATCTTCTCCACCAATCAGTCTAAACCCTTAATCAAAAAACTT 177
||||||||||||||| |||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 126 CTTTCTTCATCTAATCGTATCTTCCCCACCAATCAACCTAAACCCTTAGTCAAAAAACTT 185
Query 178 CAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTCGGCAAACACAAGGGC 237
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 186 CAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTCGGCAAGCACAAGGGC 245
Query 238 AAAATGCTTGGTACTTTGCCTTCTTCTTATCTTAAATGGGTCTCAAAGAATCTTCGTGCA 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 246 AAAATGCTTGGTACTTTGCCTTCTTCTTATCTCAAATGGGTCTCAAAGAATCTTCGTGCA 305
Query 298 GGAGTTTTTGAGTATTGGGCAAAGCTTGCTGATGAAGTGCTCGAAGACGATGTTTATAAA 357
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GGAGATTCTGAGTATTGGGCAAAGCTTGCTGATGAAGTGCTCGAAGACGATGTTTATAAA 365
Query 358 GATAGAACTGAGTGGGAATTTGCAGAGAAAATCCTCCATGGAAGTGATGAGAGCATG-AG 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 366 GATAGGACTGAGTGGGAATTTGCAGAGAAAATCCTCCATGGAAGTGATGAGAGCATGAAG 425
Query 417 AGCTTTAACTTCTGTAAGGAAGAGTAGAGAAGAGGTAAACTCTGTTTCGATGTTGTTGGA 476
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 -GCTTTAACTTCTGTAAAGAAGAGTAGAGAAGAGGTAAACTCTGTTTCGATGTTGTTGGA 484
Query 477 GATTAGTGAGAGATTTGGTTGGGATAATGAAGATAAGATTGGTTGGAGCAAAATCAATTT 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GATAAGTGAGAGATTTGGTTGGGATAATGAAGATAAGATTGGTTGGAGCAAAATCAATTT 544
Query 537 TGAGCTTTTAGGGACAAGCAAAGGTGGTCGGATTCCTAGGTTaaggaag--g--cg-a-a 590
|||||||| |||||||| |||||||||||||||||||||||||||||| | || | |
Sbjct 545 CGAGCTTTTGGGGACAAGTAAAGGTGGTCGGATTCCTAGGTTAAGGAAGATGAACGAAGA 604
Query 591 cgaag-a-a-gaagaagagagaggagaaatggtaagaagaagagagattaagaagaagga 647
|||| | | ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 605 GGAAGAAGAGGAAGAAGAGAGAGGAGAGATCGTAAGAAGAAGAGAGATTAAGAAGAAGGA 664
Query 648 agaagaggaagatgagaatggatggaggagaaaacagaggagagaaaggatgagacagag 707
|||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 665 AGAAGAAGAAGATGAGAATGGATGGAGGAGAAGACAGAGGAGAGAGAGGATGAGACAGAG 724
Query 708 tcttgggagagatgatgGCAAGACAGTGAATAGAAGTGAGCAGAAGGGTGTTTTGGGAAA 767
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 725 TCTTGGGAGAGATGATGGCAAAACGGTGAATAGGAGTGAGCAGAAGGGTGTTTTGGGAAA 784
Query 768 GCTAGAAGATGTAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCTTTTCCTGGTCGTGA 827
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GTTAGAAGAAGTAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCTTTTCCTGGTCGTGA 844
Query 828 GAGTCTGTTGAAGAAAGTCATGAACAAGA-GAAGGTCTCAATGAAAA-GTTTCTTT 881
|||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 845 GAGTCTGTTGAAGAAAGTCATGAACA-GAAGAAGGACTCAATGAAAACGTTTCTTT 899
> Ahg477705 jgi|Araly1|477705|fgenesh2_kg.3__406__AT1G51080.1
Length=644
Score = 294 bits (159), Expect = 7e-79
Identities = 273/322 (85%), Gaps = 32/322 (10%)
Strand=Plus/Plus
Query 700 agacagagtcttgggagagatgatgGCAAGACAGTGAATA-GAAGTGAGCAGAAGGGTGT 758
||||||||||| |||| |||||||||||| || |||| || | |||||||||||||||||
Sbjct 343 AGACAGAGTCTGGGGACAGATGATGGCAAAACGGTGACTATG-AGTGAGCAGAAGGGTGT 401
Query 759 TTTGGGAAAGCTAGAAGATGTAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCTTTTCC 818
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 402 TTTGGGAAAGTTAGAAGATATAGAGAAGCAACTTGAGCCAAAGATTCAAAGTCCATTTC- 460
Query 819 TGGTCGTGAGAGTCTGTTGAAGAAAGTCATGAACAAGA-GA-A-GGTCTCAATGAAAAGT 875
||||||||||||||||||||||||| | |||||||||| || | |||||| ||||||||
Sbjct 461 TGGTCGTGAGAGTCTGTTGAAGAAATTGATGAACAAGAAGAGAAGGTCTCCGTGAAAAGT 520
Query 876 TTCTTTGGGTTAAGAACATTTCACAAAAGGAAGCAAAAAG-CAAATCCTTT--TT-GAGT 931
|||||| || || | | |||||||||| || ||||||| || ||||
Sbjct 521 TTCTTT-----AA-AA-A----------G-AAGCAAAAAGGCAGATCCTTTAATTTGAGT 562
Query 932 TTGTGTAATTGAAAAATACAAACTTTGCTTTTATATGCTAAACTTGAATCAATCAATCAA 991
|||||||| |||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 563 TTGTGTAACTGAAAATTACAAACTTTGCTTCTATATGCTAAACTTAAATCAATCAATCAA 622
Query 992 T---T-CAAAGAAACTTCCTAC 1009
| | ||||||||||||||||
Sbjct 623 TCAATTCAAAGAAACTTCCTAC 644
Score = 261 bits (141), Expect = 7e-69
Identities = 199/225 (88%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 110 GAAGAAATCTTTCTTCATCTAATGGTATCTT---CTCCACCAATCAGTCTAAACCC---- 162
|||||| |||||||| ||||||| ||||||| |||| ||||| | ||||||||
Sbjct 4 GAAGAACTCTTTCTTTATCTAATCGTATCTTCCCCTCCCCCAATGAACCTAAACCCTTGG 63
Query 163 TTAATCAAAAAACTTCAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTC 222
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TTAAAAAAAAAACTTCAAATCATCGAAACCCTAGCCGCCAGAGACACAATCATAGACTTT 123
Query 223 GGCAAACACAAGGGCAAAATGCTTGGTACTTTGCCTTCTTCTTATCTTAAA-TGGGTCTC 281
||||| ||||||||||||||||||||| |||||||||||||||| || ||| ||||||||
Sbjct 124 GGCAACCACAAGGGCAAAATGCTTGGTGCTTTGCCTTCTTCTTACCTCAAAATGGGTCTC 183
Query 282 AAAGAATCTTCGTGCAG-GAGTTTTTGAGTATTGGGCAAAGCTTG 325
||||||||||||||||| || || | |||||||||||||||||||
Sbjct 184 AAAGAATCTTCGTGCAGCGA-TTCT-GAGTATTGGGCAAAGCTTG 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37512950328
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5