BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51090.1

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923583 jgi|Araly1|923583|scaffold_104864.1                        712    0.0  


> Ahg923583 jgi|Araly1|923583|scaffold_104864.1
Length=559

 Score =  712 bits (385),  Expect = 0.0
 Identities = 500/554 (90%), Gaps = 13/554 (2%)
 Strand=Plus/Plus

Query  28   CTCAAGCAAGACTCCCAAGCTATGGCGGAGAA-G--GTAGTGATGATGAAATTGAAAGTG  84
            |||||| ||  ||||||||||||||| ||||| |  |||||||||||||| |||||||||
Sbjct  1    CTCAAG-AATTCTCCCAAGCTATGGCTGAGAAGGTAGTAGTGATGATGAAGTTGAAAGTG  59

Query  85   GATCTAAACTGTTCCAAATGCTACAAAAAGGTCAAGAAAGCTATCCGCAAATTCCCTCAA  144
            ||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||
Sbjct  60   GATCTAAACTGTTCCAAATGCTATAAAAAGGTTAAGAAAGCTCTCGGCAAATTCCCTCAA  119

Query  145  ATAACAGACGAATTGTTTGATGAGAAGTCCAACACGATCATCATCAAAGTAGTTTGTTAC  204
            |||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  120  ATAACAGACGAATTATTCGATGAGAAGTCGAACACGATCATCATCAAAGTGGTTTGTTAC  179

Query  205  GATCCTGAGAGGCTAATGAACAAACTTTGCTACAAAGGAGACGGTTCTATCAAGTCCATC  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GATCCTGAGAGGCTAATGAACAAACTTTGCTACAAAGGAGACGGTTCTATCAAGTCCATC  239

Query  265  GTGATCCTTGAGCCACCCAAACCgcctcaaccccagcctcaaccacctcagaagc-ctac  323
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | | 
Sbjct  240  GTGATCCTTGAGCCACCCAAACCACCTCAACCCCAGCCTCAACCTCCTCAGAAGCTCAAA  299

Query  324  t-gccccagcc-ccagccccagcccaagcccaagccccagcTCTTGTTCGGCCGGCTCCG  381
              | | | | | ||||| ||||||| ||||| || || ||| |  | ||  | |  ||||
Sbjct  300  GAGGCTCTGGCTCCAGCTCCAGCCCCAGCCCCAGTCCTAGCCCCAGCTC--CAGT-TCCG  356

Query  382  GTTCCTGTTCTTGTTTCGTCTTCCG-CTCCTCAACCGATGCCGATGTGGCAGCCGTATCA  440
            | ||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct  357  GCTCCTGTTTTTGTTTCGGCT-CCGGCTCCTCAACCGATGCCGATGTGGCAGCCGTATCA  415

Query  441  TTGTGGGCCGTATTACGAGGCCCAACAGTACCAATGTTATGGAAGGCCCGTTTACGAGAG  500
            |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||
Sbjct  416  TTGTGGGCCGTATTACGAGGCCCAACAACACCAATGTTACGGAAGGCCCGTTTACGAGAG  475

Query  501  CTGGGGAGGTGGACGACAATGTTGCCACGAAGATATGAACTCTCAAGGATGCTCCATCAT  560
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  476  CTGGGGAGGTGGACGACATTGTTGCCACGAAGACATGAACTCTCAAGGATGCTCCATCAT  535

Query  561  GTGAAACACT-GAA  573
            ||||||| || |||
Sbjct  536  GTGAAACGCTTGAA  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28287204414


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5