BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51100.1
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474225 jgi|Araly1|474225|fgenesh2_kg.1__4179__AT1G51100.1 1395 0.0
> Ahg474225 jgi|Araly1|474225|fgenesh2_kg.1__4179__AT1G51100.1
Length=888
Score = 1395 bits (755), Expect = 0.0
Identities = 847/890 (95%), Gaps = 11/890 (1%)
Strand=Plus/Plus
Query 6 AACACTCTTCCTCTAAGCTTTTTAAATCAATGGCTTCCACTTCCACACTTCTTCTTCCAT 65
|||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 1 AACACTCTTCGTCTAAGCTTTTAAAATCAATGGCTTCCACTTCCACATTTCTTCTTCAAT 60
Query 66 CTCTCTCCTCTAAGAATCTTCACATCGCAGTCCCAATAAGAACCAATAGCTTCGTTCGTC 125
||||||| |||| || ||||||||| ||||||| ||||||||| ||||||||| || ||
Sbjct 61 CTCTCTCTTCTACTAACCTTCACATCACAGTCCCTATAAGAACCTATAGCTTCGGTCTTC 120
Query 126 GAACAACAAAGTTCTCAACAAAATGTTCGTCGAATCCAGAGTCAAAGGATCAATTCATCA 185
|||||||||| ||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct 121 GAACAACAAAATTCTCAACAAAATGTTCATCAAAACCAGAGCCAAAGGATCAATTCATCA 180
Query 186 ATCTCACACCAGCACCTGAATCAATCAACACAACAAGCGCAGAGAAATTCCCAATAGAGA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTCACACCAGCACCTGAATCAATCAACACAACAAGCGCAGAGAAATTCCCAATAGAGA 240
Query 246 AACGAAGAAGATCAGAGATCATACGAGACAGAACACAAAGAGGAATCGAGAAACCAGAGC 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACGAAGAAGATCAGAGATCATACGAGACAGAACACAAAGAGGAATCGAGAAACCAGAGC 300
Query 306 CACCAAACTTCGAAATCGGTTGGAAAAGAACAAAAGAGATAAACTTGGAGAAACCTAAAG 365
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACCAAATTTCGAAATCGGTTGGAAAAGAACAAAAGAGATAAACTTGGAGAAACCTAAAG 360
Query 366 GTTATGTAATAATGGATTTCTTAGAAAAGTTCGAAGCTTTAATGGCGAGAGAGTTTGGAT 425
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GTTATGTAATAATGGATTTCTTAGAAAAGTTCGAAGCTTTAATGTCGAGAGAGTTTGGAT 420
Query 426 CAAAGGAGCTTTTAGCTAAAGCTGGTGAGATTGTTGCagagagagctagagaagaagctg 485
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 421 CAAAGGAGCTTTTAGCTAAAGCAGGTGAGATTGTTGCTGAGAGAGCTAGAGAAGAAGCTG 480
Query 486 aggttttgagagatgaaggtaaagttgaagagagaaTGGTTACAGAGCTTTTTAGGGTTT 545
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 481 AGGTTTTGAGAGATGAAGGTAAAGTTGAAGAGAGAATGGTCACTGAGCTTTTTAGGGTTT 540
Query 546 TGAAATTGATGGAGATGGATTTAGCTATGGTTAAAGCTTCTGTTAAAGATGAAACTTTGA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGAAATTGATGGAGATGGATTTAGCTATGGTTAAAGCTTCTGTTAAAGATGAAACTTTGA 600
Query 606 GTCAGAGGATTGAACAAGCTAGAGCTCGGTGTCGACAAGCTATTCTTGTTGCTAATTCTT 665
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 601 GTCAGAGGATTGAACAAGCTAGAGCTCGGTGTAGACAAGCTATACTTGTTGCTAATTCTT 660
Query 666 TCTAATTCCTTCTTCTTCTACTTGCAAATTGAGTCAAAAGTCTATGAATTTTGTTTATAG 725
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 TCTAATTCCTTCTTCTTCTTCTTGCAAATTGAGTCAAAAGTCTATGAATTT-GTTTATAG 719
Query 726 TTTTACACAAAACAGAGCTTCTTCATCTGTAAAAGATCTTAtttttttGGTTCTGTAATC 785
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 720 TTTTACACAAAACAGAGCTTCAACATCTGTAAAAGATCTTATTTTTT-GGTTCTGTAATC 778
Query 786 ATCTCTGGATCATTCATCTGTTACTTTAATGGTAGAAGAAGGATTGAAGATGAG--A--G 841
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |
Sbjct 779 ATCTCTGGATCATTCATCTGTTACTTCAATGGTAGAAGAAGGATTAAAGATGAGGGAATG 838
Query 842 TC-----TCATGTGAAGAATCAAAACAAAGATTCATGCTTTTGGTTTTGC 886
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGAAGAATCATGTGAAGAATCAAAACAAAGATTCATGCTTTTGGTTTTGC 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32823831537
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5