BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51110.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474226 jgi|Araly1|474226|fgenesh2_kg.1__4180__AT1G51110.1 2121 0.0
> Ahg474226 jgi|Araly1|474226|fgenesh2_kg.1__4180__AT1G51110.1
Length=1471
Score = 2121 bits (1148), Expect = 0.0
Identities = 1357/1456 (93%), Gaps = 22/1456 (2%)
Strand=Plus/Plus
Query 1 AAAGTTTAATCATTTTAACAAAAG-----C--TTCACAAGCAGCAGTAGACAGCAACAAT 53
||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 1 AAACTTTAATCATTTTAACAAAAGCTTCACATTTCACAAGCAGCACTAGACAGCAACAAT 60
Query 54 GGTGGCAGTCAGATTCTACGCTGTAGAGATGTCGCTACCATGTTTATGTCCATGCCCATC 113
||||||| | ||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 61 GGTGGCACTTAGATTCTACACCGTAGAGATGTCGCTACCATGCTTATGTCCATGCCCATC 120
Query 114 ATCGCCGATTTCTCTTTCATTGTGTTCTCCGAGATTCAATCTTCTTAACACAACAAGCAG 173
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 121 ATCGCCGATTTCTCTTTCATTGTGTTCTCCGAGATACAATCTTCTTAAGACAACAAGCAA 180
Query 174 GAGACTAGGTTTGTCTAGAAACTGTAGAACTCTGCGAATCAGTTGTTCATCTTCATCTAC 233
|||||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 181 GAGACTAGATTTGTCTAGAAACTGTAGAACTCTCCGCATCAGTTGTTCATCTTCCTCTAC 240
Query 234 TGTCACTGACCAAACTCAACAATCGTCTTTTAATGATGCTGAGTTGAAACTCATTGACGC 293
||||||||||||||| |||||||||||||| || ||||||||||||||| | ||||||||
Sbjct 241 TGTCACTGACCAAACACAACAATCGTCTTTCAACGATGCTGAGTTGAAATTGATTGACGC 300
Query 294 TTTGATCGGAATTCAAGGCCGTGGCAAATCTGCTTCTCCTAAACAGCTCAATGATGTTGA 353
||| || |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 TTTAATTGGAATTCAGGGCCGTGGCAAATCTGCTTCTCCTGAACAGCTCAATGATGTTGA 360
Query 354 ATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATCCTACAGATTCTGACCT 413
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
Sbjct 361 TTCTGCTGTGAAAGTTCTTGAAGGTTTAGAGGGTATTCAGAATCCTACAGATTCTGACTT 420
Query 414 AATCGAAGGTCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATCCA 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 AATCGAAGGCCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATTCA 480
Query 474 AAGAACATTTACAGGAGTTGATGTGTTCACTGTGTTTCAAGATGTATACTTGAAGGCAAC 533
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 481 GAGAACATTTACAGGAGTAGATGTGTTTACTGTGTTTCAAGATGTATACTTGAAGACAAC 540
Query 534 AAACGATCCTCGTGTTTCAAACATTGTTAAATTCTCTGATTTCATTGGAGAGCTGAAAGT 593
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 AAACGATCCTCGTGTTTCAAACATTGTTAAATTCTCTGACTTCATTGGAGAGCTGAAAGT 600
Query 594 TGAGGCAGTTGCGTCGATCAAAGATGGGAAACGAGTTTTATTCCGTTTTGATAGAGCCGC 653
|||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 601 TGAGGCAGCTGCGTCGATCAAAGATGGGAAACGGGTTTTATTCCGTTTCGATAGAGCTGC 660
Query 654 TTT-TGATTTGAAGTTCCTTCCTTTCAAAGTTCCATATCCAGTTCCTTTTAGACTTCTTG 712
||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 TTTCT-CTTTAAAGTTCCTTCCTTTCAAAGTTCCATATCCAGTTCCTTTTAGGCTTCTTG 719
Query 713 GTGATGAAGCAAAAGGTTGGCTAGATACTACTTATTTGTCGCCTTCAGGTAACCTTAGGA 772
||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 720 GTGATGAGGCAAAAGGTTGGTTAGATACTACGTATTTGTCGCCTTCAGGAAACCTTAGGA 779
Query 773 TTTCTAGGGGAAACAAGGGAACAACGTTTGTTCTTCAGAAAGAAACCGTGCCTAGGCAGA 832
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 TTTCAAGGGGAAACAAGGGAACAACGTTTGTTCTTCAGAAAGAAACGGTGCCTAGGCAGA 839
Query 833 AATTGTTAGCCACCATATCTCAAGACAAAGGAGTAGCTGAGGCTATCGATGAGTTTCTTG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATTGTTAGCCACCATATCTCAAGACAAAGGAGTAGCTGAGGCTATCGATGAGTTTCTTG 899
Query 893 CGTCTAATTCTAATTCCGCGGAAGATAATTATGAGCTTTTAGAAGGAAGTTGGCAAATGA 952
|| ||||||||||| ||||||||| | |||| |||||||| |||||||| ||||||||||
Sbjct 900 CGACTAATTCTAATCCCGCGGAAGTTGATTACGAGCTTTTCGAAGGAAGCTGGCAAATGA 959
Query 953 TTTGGAGTTCACAGATGTATACAGATAGTTGGATTGAAAATGCAGCAAATGGTCTTATGG 1012
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 960 TTTGGAGTTCACAGATGTTTACAGATAGTTGGATTGAAAATGCAGCCAATGGTCTTATGG 1019
Query 1013 GAAGACAGATCATTGAGAAGGATGGGAGGATAAAGTTTGAAGTTAACATCATTCCGGCAT 1072
||||||||||||| ||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 1020 GAAGACAGATCATCGAGAAGGATGGAAGAATAAAGTTTGAAGTTAACATCATCCCAACAT 1079
Query 1073 TTAGATTCTCCATGAAAGGCAAATTCATAAAATCAGAAAGCAGTACATATGACTT-GAAG 1131
|||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||
Sbjct 1080 TTAGATTCTCCATGAAAGGCAAATTCATAAAATCAGAAAGCAGTACCTAT-AGTTTGAAG 1138
Query 1132 ATGGACGACGCAGCAATTATAGGCGGTGCATTTGGATATCCGGTCGATATAACAAACAAT 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATGGACGACGCAGCAATTATAGGCGGTGCATTTGGATATCCGGTCGATATAACAAACAAC 1198
Query 1192 ATCGAGCTAAAAATTCTGTACACAGATGAGAAGATGAGGATAAGCCGAGGATTCGATAAC 1251
||||| || |||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1199 ATCGAACTTAAAATTCTGTACACAGATGAGAAGTTGAGGATAAGTCGAGGATTCGACGAC 1258
Query 1252 ATTATCTTTGTGCACATCCGAGAAATTTAGCTGCATTGTTCTATCAGAACCTCTTATTTG 1311
|||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1259 ATTATCTTCGTGCACATCCGAGAAATTTAGCTGCATTGTTCTAT--G--C-TCTTATTTG 1313
Query 1312 AACATATGaaaaaaaaTAGTATGTAAGAAACTGTCAAATGTTTTACAACAATGGAAGGTG 1371
||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1314 AACATGTGAAAAAA--TAGTATGTAAGAAACTGTCAAATGCTTTACAACAATGGAAAGTG 1371
Query 1372 ATAGTTTAAATTTTCTCTG-T--TCATTAGtttttttGGATGTAACAGGAACCAGAAAAA 1428
|| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATGGTTTAAATTTT-TCTGGTCATCATTAGTTTTTTTGGATGTAACAGGAACCAGAAAAA 1430
Query 1429 ACAAGAAACCACATGA 1444
||||||||||||||||
Sbjct 1431 ACAAGAAACCACATGA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5