BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51120.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474227 jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1 1615 0.0
Ahg474200 jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1 1029 0.0
> Ahg474227 jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1
Length=1062
Score = 1615 bits (874), Expect = 0.0
Identities = 1002/1064 (94%), Gaps = 7/1064 (1%)
Strand=Plus/Plus
Query 1 ATGGACGAGATGAGCAATGTAGCCAAGACAACGACAGAGACTTCAGGCTTAACTGACTCT 60
|||||| |||||||| ||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1 ATGGACAAGATGAGCTATGAAGCCAAGACAACGACAGAGACTTCAGGCTCAAGTGACTCT 60
Query 61 GTCTTG-AGCCTCACGAAACGCATGAAACCTACTGAGGTTACGAC--C-ACCACAAAACC 116
|||||| | | ||||||||||||||||||||||| ||||||||| | |||| ||||||
Sbjct 61 GTCTTGCA-CATCACGAAACGCATGAAACCTACTTTGGTTACGACGACGACCATAAAACC 119
Query 117 TGCCTTGTCCAACACGACGAAATTCAAAGGAGTTGTTCAGCAACAGAACGGTCATTGGGG 176
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 120 TGCCTTGTCCAACACGACGAAATACAAAGGAGTGGTTCAGCAGCAGAACGGTCATTGGGG 179
Query 177 TGCTCAGATTTACGCAGACCATCGAA-GGATTTGGCTTGGAACTTTCAAATCCGCTCATG 235
|||||||||||||||||| || | || |||||||||||||||||||||||||||||| ||
Sbjct 180 TGCTCAGATTTACGCAGAACA-CAAACGGATTTGGCTTGGAACTTTCAAATCCGCTCCTG 238
Query 236 AAGCCGCTGCTGCTTACGATAGCGCATCGATTAAGCTTCGAAGCTTTGATGCTAACTCGC 295
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 AAGCCGCTGCGGCTTACGATAGCGCATCGATTAAGCTTCGAAGCTTTGACGCTAACTCGC 298
Query 296 ACCGGAACTTCCCTTGGTCTGATTTTACCCTCCATGAACCGGACTTTCAAGAGTGCTACA 355
|| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 299 ACAGGAACTTCCCTTGGTCTGATTTTACGGTTCATGAACCGGACTTTCAAGAGTGCTACT 358
Query 356 CGACAGAAGCTGTGTTGAACATGATCAGAGACGGTTCTTATCAACACAAGTTCAGAGATT 415
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 359 CAACAGAAGCTGTGTTGAACATGATCAGAGACGGTTCTTACCAGCACAAGTTCAGAGATT 418
Query 416 TTCTCAGAATCCGGTCTCAGATTGTTGCGAATATCAACATCGTGGGATCAAAACAAGTCT 475
|||| |||||||||||||||||||| || || ||||||||||| || ||||||||||||
Sbjct 419 TTCTTAGAATCCGGTCTCAGATTGTCGCTAACATCAACATCGTTGGTTCAAAACAAGTCC 478
Query 476 TAGGAGGAGGAGAAGGTGGTCAAGAATCGAACAAGTGTTTCTCGTGCACGCAGCTTTTTC 535
|||||||| || ||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 GAGGAGGAGAAGGAGGAGCTCAAGAATCGAACAAGTGTTTCTCGTGCACACAGCTTTTTC 538
Query 536 AGAAAGAACTGACACCGAGCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGT 595
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGAAGGAACTGACACCGAGCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGT 598
Query 596 ATGCAGTGAAGTATATGCCTTTCATAAGCGATGATCAAAGCGAGAAAGAGACGAGTGAAG 655
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 ATGCAGTGAAGTATATGCCTTTCATTAGCGATGATCAAAGCGAGAAAGAGACGAGTGAAG 658
Query 656 GAGTAGAAGATGTGGAGGTTGTCTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGT 715
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 659 GAGTAGAAGATGTGGAGGTTGTGTTTTATGACAGAGCAATGAGACAATGGAAGTTTAGGT 718
Query 716 ATTGTTACTGGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATTGTTACTGGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGA 778
Query 776 AGGAGAAGAATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAACA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 AGGAGAAGAATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAGCA 838
Query 836 ATGTGAAGACATTAGAAGGCCAAAGCAAGACCTTCTTGATGATTGATGTTCATCACTTTT 895
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 839 ATGTGAAGACATTAGAAGGCCAAAGCAAGAACTTCTTGATGATTGATGTTCATTACTTTT 898
Query 896 CAGGCAACGGTTTCGTGGTTCCCGAGGAAGTAAACAAGACGGTTCATGAGATTTCTGATG 955
|||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 899 CAGGCAACGGTTTCAACCTTCCCGAGGAAGTAAACAAGACGGTTCACGAGAGTTCTGATG 958
Query 956 AAGAGATGAAAACAGAAACCCTCTTTACCTCGAAGGTAGAAGAAGAAACCAAATCAGAGG 1015
|||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 959 AAGAAATGAAAACAGAAACCCTCTTTAGCTCGAAGTTAGAAGAAGAAACCAAATCAGAGG 1018
Query 1016 AGAAGAAAGGAGGGTTTATGCTGTTTGGTGTTAGGATCCAATAG 1059
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 AGAAGAAAGGAGGGTTTATGTTGTTTGGTGTTAGGATCCAATAG 1062
> Ahg474200 jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1
Length=1014
Score = 1029 bits (557), Expect = 0.0
Identities = 816/937 (87%), Gaps = 34/937 (4%)
Strand=Plus/Plus
Query 141 CAAAGGAGTTGTTCAGCAACAGAACGGTCATTGGGGTGCTCAGATTTACGCAGACCATC- 199
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 84 CAAAGGGGTGGTTCAGCAACAGAACGGTCATTGGGGGGCTCAGATTTATGCAGACCA-CA 142
Query 200 GAAGGATTTGGCTTGGAACTTTCAAATCCGCT-CATGAAGCCGCTGCTGCTTACGATAGC 258
|||||||||||||||||||||| |||||||| | ||||||||| | |||||||||||
Sbjct 143 AAAGGATTTGGCTTGGAACTTTCCAATCCGCTGC-TGAAGCCGCCACGGCTTACGATAGT 201
Query 259 GCATCGATTAAGCTTCGAAGCTTTGATGCTAACTCGCACCGGAACTTCCCTTGGTCTGAT 318
||||| || || || || |||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 202 GCATCTATCAAACTCCGGAGCTTTGACGCTAACTCGCACAGGAACTTCCCTTGGTCTAAT 261
Query 319 TTTACCCTCCATGAACCGGACTTTCAAGAGTGCTACACGACAGAAG-CTGTGTTGAACAT 377
| || |||| ||||| ||||||||||| |||||||| |||| || |||||||||||||
Sbjct 262 ATCACAGTCCACGAACCAGACTTTCAAGATTGCTACACAACAG-AGACTGTGTTGAACAT 320
Query 378 GATCAGAGACGGTTCTTATCAACACAAGTTCAGAGATTTTCTCAGAATCCGGTCTCAGAT 437
|||||||||||||||||| | |||||||||||||| ||||| ||| || | ||||||||
Sbjct 321 GATCAGAGACGGTTCTTACCCGCACAAGTTCAGAGACTTTCTAAGAGTCAGATCTCAGAT 380
Query 438 TGTTGCGAATATCAACATCGTGGGATCAAAACAAGTCTTAGGAGGAGGAGAAGGTGGTCA 497
|||||||| ||| ||||||| |||| ||||||||||| ||||| || | || |||
Sbjct 381 TGTTGCGAGTATGAACATCGGGGGAACAAAACAAGTCCGAGGAGAAGTA-AA-----TCA 434
Query 498 AGAATC-GAACAAGTGTTTCTCGTGCACGCAGCTTTTTCAGAAAGAACTGACACCGAGCG 556
|||||| | |||||||||| || ||||| |||||||||||||| ||| |||||||||| |
Sbjct 435 AGAATCTG-ACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGAATTGACACCGAGTG 493
Query 557 ATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGCCTT 616
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATGTAGGAAAACTAAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGCCTT 553
Query 617 TCATAAGCGATGATCAAAGCGAGAAAGA-GACGAGTGAA---GGAGTA---G---AAGAT 666
|||||||||||||||||||||||||||| || | ||||| |||| | | |||||
Sbjct 554 TCATAAGCGATGATCAAAGCGAGAAAGAAGATG-GTGAAATAGGAGGATCTGTGGAAGAT 612
Query 667 GTGGAGGTTGTCTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGG 726
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACTGG 672
Query 727 AGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGAAGGAGAAGAAT 786
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 673 AAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGCTGGAATAGTTTCGTGAAGGAGAAGAAT 732
Query 787 CTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAACAATGTGAAGACA 846
||||||||||| ||| |||| |||||||||||||| |||||||| || ||||| ||||||
Sbjct 733 CTCAAGGAGAAGGATGTTATAGTCTTTTACACTTGTGATGTCCCGAATAATGTCAAGACA 792
Query 847 TTAGAAGGCCAAAGCAAGACCTTCTTGATGATTGATGTTCATCACTTTTCAGGCAACGGT 906
|||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct 793 TTAGAAGGTCAAAGCAAGACCTTCTTGATGATCGATGTTCATTACTTTTCAGACAACGGC 852
Query 907 TTCGTGGTTCCC-GAGGAAGTAAACAAGACGGTTCATGAGATTTCTGATGAAGAGA-TGA 964
|||||| | | |||||||||| || |||||||||||| | ||| || |||| || |||
Sbjct 853 ACCGTGGT-CGCTGAGGAAGTAAGCATGACGGTTCATGACAGTTCAGAGGAAG-GAATGA 910
Query 965 AAACAGAAACCCTCTTTACCTCGAAGGT-AGAAGA-A--GAAACCAAATCAGAGGAGAAG 1020
||||||||| | || ||| ||||||| | | |||| | ||||||||| ||||||| ||
Sbjct 911 AAACAGAAAACTTCGTTAGCTCGAAG-TCAAAAGATAAAGAAACCAAAACAGAGGAAAAC 969
Query 1021 AAAGGAGGGTTTATGCTGTTTGGTGTTAGGATCCAAT 1057
||||||||||||||||| |||||||| ||||||||||
Sbjct 970 AAAGGAGGGTTTATGCTCTTTGGTGTAAGGATCCAAT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5