BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51130.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474228 jgi|Araly1|474228|fgenesh2_kg.1__4182__AT1G51130.1 2004 0.0
> Ahg474228 jgi|Araly1|474228|fgenesh2_kg.1__4182__AT1G51130.1
Length=1566
Score = 2004 bits (1085), Expect = 0.0
Identities = 1440/1599 (90%), Gaps = 73/1599 (5%)
Strand=Plus/Plus
Query 1 AATTTTCTCTTTCTTCCTTTTTTCCCTCAAAAATATCAAAAATCCCCAAATTCAACCTGC 60
||||||||||||||||| |||||||||| | | |||||||||||||||||| ||||
Sbjct 1 AATTTTCTCTTTCTTCC-TTTTTCCCTC----A-A--AAAAATCCCCAAATTCAATCTGC 52
Query 61 CGTTAGGGTTTTCAATTTC-TCCACTTCTTCTTCTTCGTTTCGCTTCTTCAACGTCTCTC 119
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 53 CGTTAGGGTTTTCAATTTCTTCCACTTCTTCTTCTTCGTTTCGCTTCTTCTACATCTCTC 112
Query 120 CTTGTTCGACAGTTCT-AAATTCACCATGAGGAAGACGGTGAAGCGAGAATCGGAAG--- 175
||||||||| | |||| || ||| ||||||||||||||||||||||||| | ||||
Sbjct 113 CTTGTTCGATAATTCTGGAA-TCATCATGAGGAAGACGGTGAAGCGAGAACCAGAAGTCC 171
Query 176 -C-----CACCGGCGGGAAAAGAGAAGCCGACGACGAGCCGGAGAAGTTGAGGTCTGTGA 229
| || |||||| ||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 172 CCGGTGGCAGCGGCGGCAAAAGAGAAGCAGACGAAGAGCCGGAGCGGTTGAGGTCTGTGA 231
Query 230 AGAAAGAGAAACAGAGAAAAACCGAAGCTGACTCCGTACGACCCGACGAGCCTCCTCCGC 289
|||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 232 AGAAGGAGAAACAGAGAAAAACCGGAGCTGACTTCGTACGACCCGACGAGCCTCCTCCGA 291
Query 290 CTCAGGAGGAAGAACAAGGAATATCTGATCGGAGAATTCTCAGATCCAAGTATCTCTCTC 349
| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 292 GTGAGGAGGAAGAACAAGGAATTTCTGATCGGAGAATTCTCAGATCTAAGTATCTCTCTC 351
Query 350 TTCAAAACGAAATCAACGATTGTAAAGATGATTTGATGAAGATTGATTCTGACAAATTCT 409
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 352 TTCAAAACGAAATCAGCGATTCTAAAGATGATTTGATGAAGATTGATTCTGACAAATTCT 411
Query 410 CCAGAATTATTAATGCAGTTGAAAACTTGCACCAACAAGTTCGGAAGCCTAGGGAACAAA 469
|||||||| |||||| |||||||||||||||| |||| || || ||||||||||||||||
Sbjct 412 CCAGAATTTTTAATGAAGTTGAAAACTTGCACAAACAGGTGCGAAAGCCTAGGGAACAAA 471
Query 470 TTGCAGACGCAGAGGCACTTCTGGATATAGCAAACACTTTAATGTCATCGGTGAAGTCTC 529
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 472 TTGCAGACGCAGAGGCACTTCTGGATATAGCAAACACCGTAATGTCATCGGTGAAGTCTC 531
Query 530 AGTCTGCTCATGGGGTTTCACCGGCTGAGTTTGTTAATGCTTTGATCAGTGGGTTTGGTC 589
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 532 AGTCTGCTCATGGTGTTTCTCCGGCTGAGTTTGTTAATGCTTTGGTCAGTGGGTTTGGTC 591
Query 590 AAGGTTCTTTGGGGATTGATACTGATGAAACTGCTCAAGTATCTTTAAAGTGGAAGGATC 649
||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 592 AAGGTTCTTTGGGAATTGATGCTGATGAAACTGCCCAAGTATCTTTAAAGTGGAAGGATC 651
Query 650 TTGGGTTTGCTGTTTGTTCTACTGTTTTAGTATCATGTGGTTGTTCTACAATGTTGGGAC 709
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 652 TTGGGTTTGCTGTCTGTTCTACTGTTTTAGTATCATGTGGTTGTTCCACAATGTTGGGAC 711
Query 710 CTATGGATACTGAACTGAAGCAAAGGAAAAGGGCACCCAACAGAAAACGTACAAAGCCTG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CTATGGATACTGAACTGAAGCAAAGGAAAAGGGCACCCAACAGAAAACGTACAAAGCCTG 771
Query 770 GTGAAGGTGTTCGTCCAGATGAGGTAGATGATTCACAATCAGAAGAAAAAACTGATACAG 829
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 772 GTGAAGGCGTTCGTCCAGATGAGGTAGATGATTCACAATCAGAAGAGAAAACTGATACAG 831
Query 830 ACAAGAATATGACAATAATGTTTAACATCTTGGGGAAAAAGAAGCGCGTGCAGCTTGAGA 889
||||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 832 ACAAGAATATGGCAATAATGTTTACCATCTTGGGGAAAAAGAGGCGCGTGCGGCTTGAGA 891
Query 890 ATTTGGTGCTCAACAGGCGGTCATTTGCACAGACTGTAGAGAATTTGTTTGCTCTATCTT 949
||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 892 ATTTGGTGCTCAATAGGCGGTCATTTGCACAGACTGTAGAGAATCTGTTTGCGCTATCTT 951
Query 950 TCTTGGCCAAAGATGGACGAGTTGAGATCATTGTCGACAAAAGTGGTTCTCATTTCGCCA 1009
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 952 TCTTGGCCAAAGATGGACGAGTTGAGATCATTGTCGATAAAAGTGGTTCTCATTTCGCCT 1011
Query 1010 TGCCGAGAAATGCACCTGATGCAAACGTGGTGATGTCGGGTGAAGTCATTTATAACCATT 1069
| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1012 TACCGAGAAATGGACCTGATGCAAACCTGGTGATGTCGGGTGAAGTCATTTATAACCATT 1071
Query 1070 TTGTGTTTAGATTAGATTTCAAAGATTGGAAGTTGATGTCTGAAATGGTGCCACTGGGCG 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1072 TTGTGTTTAGATTAGATTTCAAAGATTGGAAGTTGATGTCTGAAATGGTGCCACTGGACC 1131
Query 1130 AGGAGCTAATGCCACACAGACAAACTGCAGTTGCTTCATCTTCTTGTCCCGCTGCATCAG 1189
||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||| |
Sbjct 1132 AGGAGTTAATGCCACACAGAGAAACTGCAGTCGCTTCATCTTCTTGTCCTGCTGCA---G 1188
Query 1190 CCCCTGCATCAGCAGACTTCACACAAGATACTCAGACAACACCAATAAGAAAACTATCGA 1249
| | ||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1189 C------A---GCAGATTTCACACAAGATACTCAGACAACACCGATAAGAAAACTGTCGA 1239
Query 1250 GAAACCGAGGGTTGGTTGTACAAGAAGAAACTGTTGTAGAAGA------T-----A---- 1294
|||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1240 GAAACCGAGGTTTGGTTGTACAAGAAGAAACTGTTGTAGAAGAAGAAACTGTTGTAGAAG 1299
Query 1295 ---CTCCTGACAA-AGAGGGCGATGGGACTCGAAGGAGATGTAAGCGGAGACTCACCTCT 1350
||||||||| | |||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1300 ATACTCCTGACACCA-AGGGCGATGGAACTCGAAGGAGATGTAAGCGGAAACTCACCTAG 1358
Query 1351 TCTTAAGGAGTGTATAGAGAGAGAAGTGAGTTGTA--TCT---AT-T-T--CATTTTGTG 1401
||||||||||||||||||||||| ||||||||| | ||| || | | |||||||||
Sbjct 1359 TCTTAAGGAGTGTATAGAGAGAGTAGTGAGTTGAAACTCTTGTATCTGTTTCATTTTGTG 1418
Query 1402 ACATTAACTAAATGTCTTTGTTAGGATTGTTTAGTTCGTTGTAG-TTTGTAGCAGTTAAG 1460
|||||| || |||||||| ||||||||||| |||| | |||| ||| || ||||||||
Sbjct 1419 ACATTAGCTTAATGTCTTCACTAGGATTGTTTTGTTCATGGTAGGTTT-TACCAGTTAAG 1477
Query 1461 TGGCTTTTGTCTTAACTCTTAAAAGAAGAAGAATTTAAAGCCtcttttggtttttcttct 1520
||||||| |||||||||||||||||||| | || ||||||||||| || |||||||||
Sbjct 1478 TGGCTTT-GTCTTAACTCTTAAAAGAAGCC-A-TT-AAAGCCTCTTT-GGCTTTTCTTCT 1532
Query 1521 tcttttttttttGATCTACTCAAGAGAGACAATTTATCT 1559
||||||| |||||||||||||||||| |||||||
Sbjct 1533 TCTTTTTA-----ATCTACTCAAGAGAGACATTTTATCT 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5