BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51150.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value Ahg917162 jgi|Araly1|917162|Al_scaffold_0008_1913 793 0.0 > Ahg917162 jgi|Araly1|917162|Al_scaffold_0008_1913 Length=1554 Score = 793 bits (429), Expect = 0.0 Identities = 538/588 (91%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 1 ATGTTGTTCCGGTCTGTTCATCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACTCCG 60 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGTTGTTCCGGTCTG-T--TCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACTTCG 57 Query 61 ATT-CATCGATTTTTCTATTCTCCTTCCCTTCTTCGTCGTCGTTCGTCTTTTA-ATGCTT 118 || | |||||||||||||||||||||||||||||||||| ||| |||||||| | |||| Sbjct 58 GTTGC-TCGATTTTTCTATTCTCCTTCCCTTCTTCGTCGTGGTTGGTCTTTTAGA-GCTT 115 Query 119 CTTTGATATCTCGTTGTTGTTCTTC--TGT--G---AG-C-GATGTTGATGTGGCTCGAG 169 |||| |||||||||||||||||||| ||| | | | ||| ||||||||||||||| Sbjct 116 CTTTTATATCTCGTTGTTGTTCTTCTGTGTGCGTTCGGTCTGATATTGATGTGGCTCGAG 175 Query 170 ACGCGGTGGTGAAGATCTTCTCCTTTTCTAGAGAGCCAAATGTTGTTCAACCTTGGCAAA 229 || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 176 ACTCGGTGGTGAAGATCTTTTCCTTTTCTAGAGAGCCAAATGTTGTTCAACCTTGGCAAA 235 Query 230 CAACTGAGAAAGAATACTCAAGCTCTGGATTTGCAATCTCCGGGAGGAGGATTCTTACAA 289 ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 236 CAACTGAGAAAGAATACTCAAGCTCTGGATTTGTAATATCCGGAAGGAGGATTCTTACAA 295 Query 290 ACGCTCATGTTGTGGGTGATCACTTATACCTGCAAGTGAGAAAACATGGTTCACCCACTA 349 || ||||||||| |||||||||| |||| ||||||||||||| ||||||||| |||||| Sbjct 296 ACTCTCATGTTGCGGGTGATCACCCATACGTGCAAGTGAGAAAGCATGGTTCATCCACTA 355 Query 350 AATACAAAGCTGAAGTTAAAGCGTTTAGG-TATGGATGTGACTTAGCTATCTTAGGTATT 408 | |||||||| |||||||||||| | || |||||||||||||||||||| ||| | ||| Sbjct 356 AGTACAAAGCAGAAGTTAAAGCGCAT-GGATATGGATGTGACTTAGCTATTTTAAGCATT 414 Query 409 GATAGTGAAGAGTTTTGGGAGGATATAAATCCTTTGGAGCTCGGAGGCATACCTTTTATC 468 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 415 AATAGTGAAGAGTTTTGGGAGGATATGAATCCTTTGGAGCTCGGAGACATACCTTTTATT 474 Query 469 GGTGAAACTGTCTACGCTTTAGGTTATCCTCGTGGTGGTGATACCATATCGGTCACAAAA 528 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 475 GGTGAAACTGTCTACGCTTTAGGTTATCCTCGTGGTGGTGATAGCATATCGGTCACAAAA 534 Query 529 GGTATTGTAACGAGAGTTGAACCTCAAAAGTATTCTCACAGCTCCATT 576 |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 535 GGTATTGTAACGAGAGTTGAACCTCAAACGTATTCTCACAGCTCCATT 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24208052295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5