BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51150.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917162 jgi|Araly1|917162|Al_scaffold_0008_1913 793 0.0
> Ahg917162 jgi|Araly1|917162|Al_scaffold_0008_1913
Length=1554
Score = 793 bits (429), Expect = 0.0
Identities = 538/588 (91%), Gaps = 18/588 (3%)
Strand=Plus/Plus
Query 1 ATGTTGTTCCGGTCTGTTCATCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACTCCG 60
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGTTGTTCCGGTCTG-T--TCATATTGTGGCTAGGTTCAGCAACTCCACGAGCACTTCG 57
Query 61 ATT-CATCGATTTTTCTATTCTCCTTCCCTTCTTCGTCGTCGTTCGTCTTTTA-ATGCTT 118
|| | |||||||||||||||||||||||||||||||||| ||| |||||||| | ||||
Sbjct 58 GTTGC-TCGATTTTTCTATTCTCCTTCCCTTCTTCGTCGTGGTTGGTCTTTTAGA-GCTT 115
Query 119 CTTTGATATCTCGTTGTTGTTCTTC--TGT--G---AG-C-GATGTTGATGTGGCTCGAG 169
|||| |||||||||||||||||||| ||| | | | ||| |||||||||||||||
Sbjct 116 CTTTTATATCTCGTTGTTGTTCTTCTGTGTGCGTTCGGTCTGATATTGATGTGGCTCGAG 175
Query 170 ACGCGGTGGTGAAGATCTTCTCCTTTTCTAGAGAGCCAAATGTTGTTCAACCTTGGCAAA 229
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ACTCGGTGGTGAAGATCTTTTCCTTTTCTAGAGAGCCAAATGTTGTTCAACCTTGGCAAA 235
Query 230 CAACTGAGAAAGAATACTCAAGCTCTGGATTTGCAATCTCCGGGAGGAGGATTCTTACAA 289
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 236 CAACTGAGAAAGAATACTCAAGCTCTGGATTTGTAATATCCGGAAGGAGGATTCTTACAA 295
Query 290 ACGCTCATGTTGTGGGTGATCACTTATACCTGCAAGTGAGAAAACATGGTTCACCCACTA 349
|| ||||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||
Sbjct 296 ACTCTCATGTTGCGGGTGATCACCCATACGTGCAAGTGAGAAAGCATGGTTCATCCACTA 355
Query 350 AATACAAAGCTGAAGTTAAAGCGTTTAGG-TATGGATGTGACTTAGCTATCTTAGGTATT 408
| |||||||| |||||||||||| | || |||||||||||||||||||| ||| | |||
Sbjct 356 AGTACAAAGCAGAAGTTAAAGCGCAT-GGATATGGATGTGACTTAGCTATTTTAAGCATT 414
Query 409 GATAGTGAAGAGTTTTGGGAGGATATAAATCCTTTGGAGCTCGGAGGCATACCTTTTATC 468
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 415 AATAGTGAAGAGTTTTGGGAGGATATGAATCCTTTGGAGCTCGGAGACATACCTTTTATT 474
Query 469 GGTGAAACTGTCTACGCTTTAGGTTATCCTCGTGGTGGTGATACCATATCGGTCACAAAA 528
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 475 GGTGAAACTGTCTACGCTTTAGGTTATCCTCGTGGTGGTGATAGCATATCGGTCACAAAA 534
Query 529 GGTATTGTAACGAGAGTTGAACCTCAAAAGTATTCTCACAGCTCCATT 576
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 535 GGTATTGTAACGAGAGTTGAACCTCAAACGTATTCTCACAGCTCCATT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5