BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51160.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923591 jgi|Araly1|923591|scaffold_104872.1 942 0.0
> Ahg923591 jgi|Araly1|923591|scaffold_104872.1
Length=552
Score = 942 bits (510), Expect = 0.0
Identities = 539/553 (97%), Gaps = 2/553 (0%)
Strand=Plus/Plus
Query 92 CTCCCGGAGACGACGGAAGCAATGCAGTTCTTCGGTGGATCTGAGATTAGTCCGTCGCCG 151
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 CTCCCGGAGACGACGAAAGCAATGCAGTTCTTCGGTGGATCTGAGATAAGTCCGTCTCCG 60
Query 152 CCAGTTCCGACGGCGAGTGGAAACAACGCGCACATGATGTACGTTTTCAATCGTAACGGT 211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCAGTTCCGACGGCGAGTGGAAACAACGCGCACATGATGTACGTTTTCAATCGTAATGGT 120
Query 212 GTATGTCTTCTCTACAAAGAATGGAATCGGCCTCTTCATACACTTAATCCTCAGCAAGAT 271
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GTATGTCTTCTCTACAAAGAATGGAATCGGCCTCTTCATACGCTTAATCCTCAGCAAGAT 180
Query 272 CACAAGCTCATGTTTGGtcttctcttctctctcaaatctctcACCGCTAAGATGGATCCA 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACAAGCTCATGTTTGGTCTTCTCTTCTCTCTCAAATCTCTCACCGCTAAGATGGATCCA 240
Query 332 GTCAATGCGGATAAAGGAAATCTT-GGGGTTCCACAGTTGCCAGGACAAGGTTGCTCTTT 390
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 241 GTCAATGCGGATAAGGGAAAT-TTAGGGGTTCCACAGTTGCCAGGACAAGGTTGCTCTTT 299
Query 391 CCATAGTTTCCGTACGAATACTTACAAGCTAAGTTTCATGGAGACTCCCTCTGGTATTAA 450
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 CCATAGTTTCCGTACGAATACTTACAAGCTAAGCTTCATGGAGACTCCCTCTGGTATTAA 359
Query 451 GATTATCTTAGTAACTCATCCAAAGACCGGAGATTTACGCGAATCCTTGAAGTACATCTA 510
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 GATTATCTTAGTAACTCATCCAAAGACGGGAGATTTACGCGAATCCTTAAAGTACATCTA 419
Query 511 CAGTTTATACGTTGAATATGTCGTAAAAAATCCTATATACAGCCCAGGATCTCCAATCAA 570
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 CAGTTTATACGTTGAATATGTCGTAAAAAATCCTATTTACAGCCCAGGATCTCCAATCAA 479
Query 571 GTCGGAGTTGTTCAACACTGCACTTGACCAGTACGTAAGGAGCATCTCTTAGTGTGTGCA 630
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 GTCGGAGTTGTTCAACACTGCACTTGACCAGTACGTAAGGAGCATCTCATAGTGTGTGCA 539
Query 631 TTACAGATTTGTC 643
|||| ||||||||
Sbjct 540 TTACTGATTTGTC 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5