BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51170.1
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474232 jgi|Araly1|474232|fgenesh2_kg.1__4186__AT1G51170.1 2028 0.0
Ahg479611 jgi|Araly1|479611|fgenesh2_kg.3__2312__AT3G20830.1 422 4e-117
> Ahg474232 jgi|Araly1|474232|fgenesh2_kg.1__4186__AT1G51170.1
Length=1363
Score = 2028 bits (1098), Expect = 0.0
Identities = 1290/1379 (94%), Gaps = 27/1379 (2%)
Strand=Plus/Plus
Query 1 AACGTTTCAGACCCACTCGtctccttccttctcatctctctctttctctcACAATGGAGA 60
||||||| |||||||||||||||||||||| | |||| |||| || ||| | |||||||
Sbjct 1 AACGTTTGAGACCCACTCGTCTCCTTCCTTTTTATCTATCTC-TT-TCT--C-ATGGAGA 55
Query 61 CAAGACCATCATCATCATCTTCTCTTTCACCGGCGACGAATCTTAACCTCGACAGACTCA 120
|| ||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 56 CACGACCATC--C-TCATCTTCTCTTACACCCGCGACGAATCTTAACCTCGACAGACTCA 112
Query 121 AAGTTCTCAAACTCCTCGGAAAAGGCGCCACCGGAACAGTCTTCCTCGTCCACGACTCTG 180
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 113 AAGTTCTAAAACTCCTCGGAAAAGGAGCCACCGGAACTGTCTTCCTCGTCCACGACTCTG 172
Query 181 TTTCCGACTCCTCTGTTTCTTCTCCCTTTGCTTTAAAACTCGTCGACAAATCCTCCGCAT 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 173 TTTCCGACTCCTCTGTTTCTTCTCCCTTCGCTTTAAAACTCGTCGACAAATCCTCTGCCT 232
Query 241 CTTCTCTCCGCCGTGCAAGGTGGGAAATTCAGATCCTCCGACGTCTCTCCGATGACACAA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CTTCTCTCCGCCGTGCACGGTGGGAAATTCAGATCCTCCGACGTCTCTCCGATGACACAA 292
Query 301 ACCCAAACCCATTTCTCCCAAAACTCTTAGCTTCATCAGAATCCTCTGAATTCATCGCAT 360
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 293 ACCAAAACCCATTTCTCCCAAAACTCTTAGCTTCCTCAGAATCCTCTGAATTCATCGCTT 352
Query 361 GGGCTTTACCTTACTGCTCCGGTGGAGATTTAAACGTCCTCCGACAACGTCAAAACGACG 420
|||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||
Sbjct 353 GGGCTTTACCTTACTGCTCCGGCGGCGATTTAAACGTCCTCCGTCACCGTCAAAACGACG 412
Query 421 GCGTTTTTAGCTCCTCCGTTATTAAATTCTACTTAGCTGAAATCGTCTGTGCGCTTGACC 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 413 GCGTTTTTAGCTCCTCCGTTATGAAATTCTACTTAGCTGAAATCGTCTGTGCGCTTGACC 472
Query 481 ACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATATACTTCTTCAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATATACTTCTTCAAG 532
Query 541 AATCGGGTCACGTGACTTTAACCGATTTTGATCTCTCTTGTAGTCTCAATAAACCCACCC 600
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 533 AATCGGGTCACGTGACTTTAACCGATTTTGATCTCGCTTGTAGTCTCAGTAAACCCACCC 592
Query 601 GACCCGAATTCTATCATCTATCCGACCCGGAACCGGATCCGAACCCGGAATCGAATCTCA 660
||||||| || | | |||||||||||| ||| |||||||||||| |||||||||| ||||
Sbjct 593 GACCCGATTT-T-T-ATCTATCCGACCTGGAGCCGGATCCGAACTCGGAATCGAAGCTCA 649
Query 661 GTCATAATAAGAAAAGTCTGAGAATTTTCCGGCAGAAGAAGAAGAAGACGAAGTCAGCTC 720
|||| || | ||| |||||||||||||||||||||||||||||| || || |||||||
Sbjct 650 GTCACAAGA-GAA--GTCTGAGAATTTTCCGGCAGAAGAAGAAGACGA--AA-TCAGCTC 703
Query 721 GTGTTAACCCGATTACACGACGGAGACTGAGTTTTTCCGGCGGTGAACGGTCAAATTCGT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 704 GTGTTAACCCGATTACACGACGGAGACTGAGTTTTTCCGGCGGTGAACGGTCGAATTCCT 763
Query 781 TTGTTGGGACTGATGAGTATATATCGCCGGAGGTAATTCGCGGCGACGGACACGATTTTG 840
| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 764 TCGTCGGAACTGATGAGTATATATCGCCGGAGGTAATTCGCGGCGACGGTCACGATTTTG 823
Query 841 CCGTCGATTGGTGGGCTCTCGGAGTTTTAACGTACGAGATGATGTACGGAGAGACACCGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CCGTCGATTGGTGGGCTCTCGGAGTTTTAACGTACGAGATGATGTACGGAGAGACACCGT 883
Query 901 TCAAAGGAAGAAACAAAAAAGAAACTTTTCGTAACGTGCTGGTGAAGGAACCTGAATTCG 960
|||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 884 TCAAAGGAAGAACCAAAAAAGAAACTTTTCGTAACGTGTTGATGAAGGAACCTGAATTCG 943
Query 961 CCGGGAAACCGTCGGATTTAACCGATTTGATCCGTCGG-TTATTGGTTAAAGATCCGACG 1019
| || |||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 944 CAGGAAAACCGTCGGATTTAACCGATTTGATCCGT-GGATTATTGGTGAAAGATCCGACG 1002
Query 1020 AAGCGGTTTGGTTTCTGGCGAGGCGCGGCGGAGATAAAGGAGCATGCTTTTTTCAAAGGA 1079
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1003 AAGCGGTTAGGTTACCGGCGAGGCGCGGCGGAGATAAAGGAGCATGCTTTTTTCAGGGGG 1062
Query 1080 GTGAGGTGGGAGTTGTTAACGGAAGTGTTGAGACCTCCGTTTATTCCGTTGAGAGATGAC 1139
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1063 GTGAGGTGGGATTTCTTAACGGAAGTGTTAAGACCTCCGTTTATTCCGTTGAGAGATGAC 1122
Query 1140 GGAGACTTGACGGGGAAAGTAACGGAGGAAAGTGGGTTTGGTATAAAGGAATATTTCGAG 1199
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1123 GGAGAATTGACGGGAAAAGTAACGGCGGAAAGTGGGTTTGGTATAAAGGAATATTTCGAG 1182
Query 1200 AAACTGAAAACGCCGCCGTTACCGTTACCGCACGAGTGTTCTGAAAACAATCCGTTTGTT 1259
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1183 AAACTGAAAACGCTGCCGTTACCGTTACCGCACGAGTGTCCTGAAAACAATCCGTTTGTT 1242
Query 1260 GATTTCTGATCCACGCGTGGGAGAATCTATCACACGTATAATAGTTTTTTAGATTCTCtt 1319
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1243 GATTTCTGATCCACGCGTGGGAGAATCTAACACACGTATAATAGTTTTATAGATTCTCTT 1302
Query 1320 ttttttttG----CTTGTTCTGTTA----GCTTTTCTGATTTTGATGTGTATAAACAAA 1370
|||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1303 TTTTTTTTCTTTTCTTGTTCTGTTATTTAGCTTTTCTGATTTTGATGTGTATAAAAAAA 1361
> Ahg479611 jgi|Araly1|479611|fgenesh2_kg.3__2312__AT3G20830.1
Length=1279
Score = 422 bits (228), Expect = 4e-117
Identities = 430/525 (82%), Gaps = 23/525 (4%)
Strand=Plus/Plus
Query 118 TCAAAGTTCTCAAACTCCTCGGAAAAGGCGCCACCGGAACAGTCTTCCTCGTC-CACGAC 176
|||||| ||||||| ||||||| ||||||||||| || || |||||||||| | ||||||
Sbjct 72 TCAAAGCTCTCAAAATCCTCGGTAAAGGCGCCACAGGTACCGTCTTCCTCG-CACACGAC 130
Query 177 -TCTGTTTCCGA-CTCCTCTGT-TTCTTCTCCCTTTGCTTTAAAACTCGTCGACAAATCC 233
|| |||| | | ||| ||| | |||||||||||| || | || |||||| ||||||||
Sbjct 131 GTC-GTTT-CAACCTCTTCT-TCTTCTTCTCCCTTCGCCGTCAAGCTCGTCCACAAATCC 187
Query 234 TCCGCATCTTCTCTCCGCCGTGCAAGGTGGGAAATTC-AGATCCTCCGACGTCTCTCCGA 292
||||| || ||||||||||||||| | ||||||| || || ||||||| ||||||||||
Sbjct 188 TCCGCTTCCTCTCTCCGCCGTGCACGCTGGGAAA-TCGAGGTCCTCCGTCGTCTCTCCGT 246
Query 293 TGACACAAACCCAAACCCATTTCTCCCAAAACTCTTAGCTTC-ATCAGAATC-CTCTGAA 350
|||| | || | |||||| |||||||| ||||||||||| || || || | | |||
Sbjct 247 TGACTCTAATCAAAACCCTTTTCTCCCTCGTCTCTTAGCTTCTTTC-GAGTCAC-CCGAA 304
Query 351 TTCATCGCATGGGCTTTACCTTACTGCTCCGGTGGAGAT-TTAAACGTCCTCCGACAACG 409
| | |||| ||||| | ||||| || |||||||| ||| || || ||||| | || ||
Sbjct 305 TACTTCGCTTGGGCCGTCCCTTATTGTTCCGGTGGTGATCTT-AATGTCCTTCTTCACCG 363
Query 410 TCAAAACGACGGCGTTTTTAGCTCCTCCGTTATTAA-ATTCTACTTAGCTGAAATCGTCT 468
|||||| |||||||||||||||||||| |||| ||| ||||||| | ||||| |||||||
Sbjct 364 TCAAAATGACGGCGTTTTTAGCTCCTCTGTTA-TAAGATTCTACGTGGCTGAGATCGTCT 422
Query 469 GTGCGCTTGACCACCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCTGAGAATA 528
|||||||||| || |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 423 GTGCGCTTGAGCATCTTCATACCATGGGGATCGCTTACAGAGACTTGAAACCCGAAAACA 482
Query 529 TACTTCTTCAAG-AATCGGGTCACGTGACTTTAACCGATTTTGATCTCTCTTGTAGTCTC 587
| || |||| | |||| |||||||| || |||||||||||||| || ||| | || ||
Sbjct 483 TTCTGATTCA-GCAATCCGGTCACGTTACCTTAACCGATTTTGACCTTTCTCGGAGCCTT 541
Query 588 AATAAACCCACCCGACCCGAATTCTATCATCTATCCGACCCGGAA 632
|| ||||||||||||||| |||||||||| | |||||||||||
Sbjct 542 AAAAAACCCACCCGACCCCAATTCTATCAAC---CCGACCCGGAA 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53669155205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5