BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51190.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923594 jgi|Araly1|923594|scaffold_104875.1 2857 0.0
Ahg930033 jgi|Araly1|930033|scaffold_302490.1 750 0.0
Ahg316221 jgi|Araly1|316221|fgenesh1_pm.C_scaffold_2001254 263 4e-69
> Ahg923594 jgi|Araly1|923594|scaffold_104875.1
Length=1749
Score = 2857 bits (1547), Expect = 0.0
Identities = 1678/1741 (96%), Gaps = 10/1741 (1%)
Strand=Plus/Plus
Query 108 AAAAGGGAAATGAATTCTAACAACTGGCTCGCGTTCCCTCTATCACCAACTCACTCTTCT 167
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 14 AAAAGGGAAATGAATTCTAACAACTGGCTTGCTTTTCCTCTATCACCAACTCACTCTTCT 73
Query 168 TTGCCGCCTCACATTCACTCTTCACAAAATTCTCATTTCAATCTAGGTTTGGTCAACGAC 227
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 74 TTGCCTCCTCACATTCACTCTTCACAAACTTCTCATTTCAATCTAGGTTTGGTCAACGAC 133
Query 228 AATATCGACAACCCTTTTCAAAACCAAGGATGGAATATGATCAATCCACATGGTGGAGGC 287
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 134 AATATCGACAACCCTTTTCAAAACCAAGAATGGAATATGATCAATCCACACGGTGGAGGC 193
Query 288 GGCGAAGGTGGAGAGGTTCCAAAAGTGGCTGATTTCTTAGGAGTGAGCAAATCGGGGGAT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GGCGAAGGTGGAGAGGTTCCAAAAGTGGCTGATTTCTTAGGAGTGAGCAAATCGGGGGAT 253
Query 348 CATCA-CACCGATCACAACCTCGTACCTTATAACGACATTCATCAAACCAACGCCTCCGA 406
||||| | |||| ||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 254 CATCATC-CCGACCACAACCTCGTACCTTACAACGACATTCATCAAACCAACGACTCAGA 312
Query 407 CTACTACTTTCAAACCAATAGCTTGTTACCTACAGTCGTCACTTGTGCCTCTAATGCTCC 466
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CTACTACTTCCAAACCAATAGCTTGTTACCTACAGTCGTCACTTGTGCCTCTAATGCTCC 372
Query 467 TAATAATTATGAGCTTCAAGAGAGTGCACACAATTTGCAATCTCTCACTCTCTCTATGGG 526
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 373 TAATAACTATGAGCTTCAAGAGAGTGCTCACAATTTGCAATCTCTCACTCTTTCTATGGG 432
Query 527 AAGTACTGGAGCTGCCGCTGCAGAAGTC-GCCACTGTGAAAGCCTCGCCGGCTGAGACTA 585
||||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||||
Sbjct 433 AAGTACTGGAGCTGCCGCTGCCGAAG-CTGACACCGTGAAAGCCTCGCCGGCTGAGACTA 491
Query 586 GTGCCGATAATAGTAGCAGCACTACCAACACAAGTGGAGGAGCCATCGTTGAGGCTACAC 645
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GCGCCGATAATAGTAGTAGCACTACCAACACAAGTGGAGGAGCCATCGTTGAGGCTACAC 551
Query 646 CGAGACGGACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAGTTACAAGAC 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CGAGACGGACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAGTTACAAGAC 611
Query 706 ATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAAGAGAAGGAC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAAGAGAAGGAC 671
Query 766 AATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCA 731
Query 826 GAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCAACTTTCCGA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCAACTTTCCGA 791
Query 886 TAACTAACTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAAGAGTTTGTGG 945
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TAACTAATTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAAGAGTTTGTGG 851
Query 946 CTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCCATGTATCGTGGAGTAA 1005
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 852 CTTCTATAAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCGATGTATCGTGGAGTAA 911
Query 1006 CAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGCTGGAAACAAAG 1065
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 912 CAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATTGGCCGAGTTGCTGGAAACAAAG 971
Query 1066 ATCTCTACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGACATAGCTG 1125
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 972 ATCTATACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGATATAGCTG 1031
Query 1126 CGATAAAGTTTCGAGGTCTAAACGCGGTTACAAACTTTGAGATAAATCGGTATGATGTGA 1185
|||||||||||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 1032 CGATAAAGTTTCGAGGTCTAAACGCGGTTACAAACTTTGAGATAAACCGTTACGACGTGA 1091
Query 1186 AAGCCATCCTGGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAACGGCTCAAAG 1245
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AAGCTATCCTAGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTAAACGGCTCAAAG 1151
Query 1246 AAGCTCAAGCTCTAGAATCATCAAGAAAACGAGAGGAAATGATAGCCCTCGGATCAAATT 1305
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1152 AAGCTCAAGCTCTAGAATCATCGAGAAAACGCGAGGAAATGATAGCCCTCGGATCAAATT 1211
Query 1306 TCCATCAATATGGTGCAGCGAGCGGCTCGAGCTCTGTTGCTTCCAGCTCTAGGCTTCAGC 1365
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 TCCATCAGTATGGTGCAGCGAGCGGCTCGAGCTCTGTTGCTTCCAGCTCTAGGCTTCAGC 1271
Query 1366 TTCAACCTTACCCTCTAAGCATTCAACAACCTTTTGAGCATCTTCATCATCATCAGCCTT 1425
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TTCAACCATACCCACTAAGCATTCAACAACCTTTTGAGCATCTTCATCATCATCAGCCTT 1331
Query 1426 TACTTACTCTACAGAACAACAACGATATCTCTCAGTATCATGATTCCTTTAGTTACATTC 1485
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1332 TACTTACTCTACAGAACAACAACGATATCTCTCAGTATCATGATTCCTATAGTTACATTC 1391
Query 1486 AGACGCAGCTTCATCTTCACCAACAACAAACCAACAATTACTTGCAGTCTTCTAGTCACA 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AGACGCAGCTTCATCTTCACCAACAACAAACCAACAATTACTTGCAGTCTTCTAGTCACA 1451
Query 1546 -CTTCACAGCTCTACAATGCTTATCTTCAGAGTAACCCTGGTCTGCTTCATGGATTTGTC 1604
| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||
Sbjct 1452 GCA-CACAGCTCTACAATGCTTATCTTCAGAGCAACCCTGGTTTGCTTCATGGCTTTATC 1510
Query 1605 TCTGATAATAACAACACTTCAGGGTTTCTTGGAAACAATGGGATTGGTATTGGGTCAAGC 1664
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1511 TCTGATAACAACAACACTTCAGGGTTTCTTGGAAACAATGGGATTGGTATTGGCTCAACC 1570
Query 1665 TCTACCGTTGGATCATCGGCTGAGGAAGAGTTTCCAGCCGTGAAAGTCGATTACGATATG 1724
|| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1571 TCGACCGTTGGATCATCGGCTGAGGAAGAGTTTCCGGCTGTGAAAGTAGATTACGATATG 1630
Query 1725 CCTCCTTCCGGTGGAGCTACAGGGTATGGAGGATGGAATAGTGGAGAGTCTGCTCAAGGA 1784
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 1631 CCTCCTTCCGGTGGAGCTACAGGGTACGGAGGATGGAATACCGGAGAGTCTGTTCAAGGA 1690
Query 1785 -TCGAATCCAGGAGGTGTTTTCACGATGTGGAATGAATAAAAGATGA-ATTCTCTGTGTT 1842
| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1691 AT-GAATCCAGGAGGTGTTTTCACGATGTGGAATGAATAAAAGATGATATT-TCTGTGTT 1748
Query 1843 T 1843
|
Sbjct 1749 T 1749
> Ahg930033 jgi|Araly1|930033|scaffold_302490.1
Length=1766
Score = 750 bits (406), Expect = 0.0
Identities = 814/1004 (81%), Gaps = 56/1004 (6%)
Strand=Plus/Plus
Query 638 GGCTACACCGAGACG-GACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAG 696
||| || |||||||| | | ||||| ||||| || || |||||||| ||||||||||| |
Sbjct 515 GGCCACGCCGAGACGTG-CATTGGACACTTTCGGGCAGCGAACCTCGATCTATCGTGGTG 573
Query 697 TTACAAGACATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAA 756
| ||||||||| ||||||| ||| | ||||| |||||||| ||||||||||| |||||||
Sbjct 574 TCACAAGACATCGATGGACGGGTCGCTATGAGGCTCATCTATGGGATAATAGTTGTAGAA 633
Query 757 GAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGA 816
| ||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 634 GGGAAGGCCAGTCTAGGAAAGGAAGACAAGTATACTTGGGTGGATATGACAAAGAAGATA 693
Query 817 AAGCAGCCAGAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCA 876
|||| || ||| |||||||||||||||||||||| || |||||||| || |||||||| |
Sbjct 694 AAGCCGCAAGATCATATGATCTAGCTGCACTTAAGTACTGGGGTCCTTCGACTACTACTA 753
Query 877 ACTTT-CCGATAACTAACTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAA 935
| ||| || || || ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 754 A-TTTCCCCATTACAAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAA 812
Query 936 GAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGATTCTCGC-GTGGTGCATCCATGTA 994
||||| |||||| | || |||||||||||||| || || || | | || || || |||||
Sbjct 813 GAGTTCGTGGCTGCCATTAGAAGGAAAAGTAGTGGCTTTTC-CAGAGGCGCTTCGATGTA 871
Query 995 TCGTGGAGTAACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGC 1054
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 872 TCGAGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGC 931
Query 1055 TGGAAACAAAGATCTCTACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTA 1114
||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 932 CGGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCAGCAGAAGCTTA 991
Query 1115 TGACATAGCTGCGATAAAGTTTC-GAGGTCTAAACGCGGTTACAAACTTTGAGATAAATC 1173
|| |||||||| |||||||| | |||| || || || || || |||||||| || |||
Sbjct 992 CGATATAGCTGCAATAAAGTT-CAGAGGACTTAATGCAGTGACCAACTTTGAAATCAATA 1050
Query 1174 GGTATGATGTGAAAGCCATCCTGGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTA 1233
||||||| || ||||||||||| ||||||| ||| ||||| |||||||| || || ||||
Sbjct 1051 GGTATGACGTCAAAGCCATCCTAGAGAGCAGCACTCTTCCCATAGGAGGAGGCGCAGCTA 1110
Query 1234 AACGGCTCAAAGAAGCTCAAGCTCTAGAATCATCAAGAAAACGAGAGGA--A-ATGATAG 1290
||||||||||||||||||||||||| || || ||||| ||||| |||| | |||||||
Sbjct 1111 AACGGCTCAAAGAAGCTCAAGCTCTGGAGTCTTCAAGGAAACGTGAGGCGGAGATGATAG 1170
Query 1291 CCCTCGGATCAAATTTCCATCAATATGGTGCAGCGAGCG-GCTCGAG-CTCTGTTGCTTC 1348
|||| || |||| |||||| || || | | | || || | || ||||| ||| |
Sbjct 1171 CCCTTGGTTCAAGTTTCCAG---TACGGGGTTG-GCTCGAGCAC-AGGCTCTG--GCT-C 1222
Query 1349 CAGCTC-T-A-GGCTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCTTTTGAGCA 1405
|||||| | | |||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1223 CAGCTCATCAAGGCTTCAGCTTCAACCATACCCTCTAAGCATTCAGCAACCTTTAGAGCC 1282
Query 1406 TCTTC-ATCATCATCAGC-CTTT-AC-T-TACTC-T-ACAG-AACAACAACG---AT-AT 1453
| ||| ||| || |||| | | || | | ||| | |||| |||||||| | || ||
Sbjct 1283 TTTTCTATC-TCTTCAGAACAATGACATCT-CTCATTACAGCAACAACAATGCTCATGAT 1340
Query 1454 -C-TC-TCAGTATCATGATTCCTTTAGTTACATTCAGACGCAGCTTCATCTTCACCAACA 1510
| || || | | || | || | || || || ||||| ||||||||||| ||||||||
Sbjct 1341 TCCTCCTCTTT-TAATCA--CCAT-AGCTATATCCAGACACAGCTTCATCTCCACCAACA 1396
Query 1511 ACAAACCAACAATTACTTGCAGT--CT-TCTAGTCACA-CTT-CA-CAGCTCTACAATGC 1564
| ||||||||||||||||| | || || || | || || ||||||||||| ||
Sbjct 1397 G-A--CCAACAATTACTTGCAGCAACAATCGAGCCAGAACTCGCAGCAGCTCTACAACGC 1453
Query 1565 TTATCTTCAGAGTAACCCTGG-TCTGCTTCATGGATTTGTCTCT 1607
|||||||| || || || || ||| || ||||| ||||||||
Sbjct 1454 GTATCTTCATAGCAATCC-GGCTCTTCTCCATGGCCTTGTCTCT 1496
> Ahg316221 jgi|Araly1|316221|fgenesh1_pm.C_scaffold_2001254
Length=1287
Score = 263 bits (142), Expect = 4e-69
Identities = 416/541 (77%), Gaps = 47/541 (9%)
Strand=Plus/Plus
Query 665 TTTTGGACAACGAACCTCT-ATCTATCGTGGAGTTACAAGACATAGATGGACCGGTAGAT 723
||| |||||| |||| ||| | ||||||||||||||||| ||||||||||| || ||||
Sbjct 696 TTTCGGACAAAGAACTTCTCA-GTATCGTGGAGTTACAAGGCATAGATGGACAGGGAGAT 754
Query 724 ATGAAGCTCATCTT-TGGGATAATAGCTGT-AGAAGAGAAGGACA-ATCAAGGAAAGGAA 780
|||||||||| ||| ||||||||||||||| |||| ||| || || | ||||||||||||
Sbjct 755 ATGAAGCTCA-CTTATGGGATAATAGCTGTAAGAA-AGAGGGTCAGA-CAAGGAAAGGAA 811
Query 781 GACAAGTCTACTTAGGTGGGTATGACAAAGAAG-AGAAAGCAGCCAGAGCATATGATCTA 839
| | | | ||| |||||||| | | || |||||||||| || || |||||| ||
Sbjct 812 G---A--C-A---AGGAGGGTATGATGATG-AGAAGAAAGCAGCGAGGGCTTATGATTTA 861
Query 840 GCTGCACTTAAATATTGGGGTCCCTCTACTACT-AC-CAACTTT-CCGATAACTAACTAC 896
|| || || || ||||||||| | |||| ||| || || ||| || | | ||| |||
Sbjct 862 GCGGCTCTGAAGTATTGGGGT--C-CTACCACTCACTTAAATTTCCCTTTGAGTAATTAC 918
Query 897 GAGAAGGAAG-TAGAGGAGA-TGAAAAACATGACGAGACAAGAGTTTG-TGGC-TTCTAT 952
|| |||| || | ||||| | | || ||||||| || ||||| |||| || | | | |
Sbjct 919 GAAAAGG-AGATCGAGGA-ACTCAATAACATGAATAGGCAAGAATTTGTTGCCATGC--T 974
Query 953 AAGAAGGAAAAGTAGCGGATTCTCGCGTGGTGCATCCATGTATC-GTGGAGTAACAAGGC 1011
|| ||||| |||||||| || ||| | || || || || || | | ||||| |||||||
Sbjct 975 GAGGAGGAACAGTAGCGGGTTTTCGAGGGGAGCTTCAATTTA-CAGAGGAGTTACAAGGC 1033
Query 1012 ATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGCTGGAAACAAAGATCTC- 1070
||||||||||||||||||||||||| || || || ||||||||||||||||||| ||
Sbjct 1034 ATCATCAACATGGAAGATGGCAAGCTAGAATTGGAAGAGTTGCTGGAAACAAAGA-CTTG 1092
Query 1071 TAC-TTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTATGACATAGCTGCGAT 1129
||| |||| | |||| |||||| | |||||||||||||| || || || || || || ||
Sbjct 1093 TACCTTGGCA-CATTTAGCACGCAAGAAGAAGCAGCAGAGGCGTACGATATCGCGGCAAT 1151
Query 1130 -AAAGTTTC-GAGGTCTAAACGCGGTTACAAACTTT-GAGATAAATCGG-TATGATGTGA 1185
||| || | |||| ||||| || || || || ||| || || || | | ||||| ||||
Sbjct 1152 TAAA-TT-CAGAGGCCTAAATGCTGTAACTAA-TTTCGATATTAA-CAGATATGACGTGA 1207
Query 1186 A 1186
|
Sbjct 1208 A 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5