BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51200.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474234 jgi|Araly1|474234|fgenesh2_kg.1__4188__AT1G51200.1 1476 0.0
> Ahg474234 jgi|Araly1|474234|fgenesh2_kg.1__4188__AT1G51200.1
Length=1040
Score = 1476 bits (799), Expect = 0.0
Identities = 968/1044 (93%), Gaps = 33/1044 (3%)
Strand=Plus/Plus
Query 1 GTCGAGACAAACCaaaaaaa-aGCCTAAAAAGCCGACCTTTTTTCTTTCTTTCTCTCCTC 59
||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCGAGAGAAA-CAAAAAAAGAGCCTAAAAAGCCGACCTTTTTTCTTTCTTTCTCTCCTC 59
Query 60 TACCTCTCAGCTTCTGCTGGATCTCTCCAGCAGACACGATCTTGTTCGGAGAGATTCGTA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TACCTCTCAGCTTCTGCTGGATCTCTCCAGCAGACACGATCTTGTTCGGAGAGATTCGTA 119
Query 120 GGGGACCGATCTATCAAGGCTTCAAGGGC--AAA-----C-AGAAATGGACCACGACAAG 171
||||| | ||| ||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 120 GGGGATCTATCAATCAAGGCTTCAAGGGCAGAAATGGTTCTAGAAATGGACCACGACAAG 179
Query 172 ACAGGATGCCAAAGCCCACCTGAAGGTCCCAAGCTATGTACT-AACAACTGCGGTTTCTT 230
||||||||||||||||||||||||||||| ||||| |||| | ||||| |||||||||||
Sbjct 180 ACAGGATGCCAAAGCCCACCTGAAGGTCCGAAGCTGTGTA-TCAACAATTGCGGTTTCTT 238
Query 231 TGGAAGCGCTGCCACAATGAACATGTGTTCTAAGTGTCACAAGGATATGTTGTTCCAACA 290
|||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||
Sbjct 239 TGGAAGCGCTGCCACAATGAACATGTGTTCGAAGTGTCACAAGGATAAGTTATTTGAACA 298
Query 291 GGAGCAGGGCGCTAAGTTTGCATCTGCAGTGTCTGGAACATCGTCATCCAGCAACATCAT 350
| | ||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 299 GAAACAGGGGGCTAAGTTTGCATCTGCAGTGTCTGGAACATCATCGTCCAGCAACCTCAT 358
Query 351 AAAGGAAACCTTTACCGCTGCGTTGGTCGATATTGAAACCAAATCCGTTGAGCCGATGAC 410
|||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 AAAGGATACCATTACTGCTGCGTTGGTCGATGTTGAAACCAAATCCGTTGAGCCGATGAC 418
Query 411 TGTTTCTGTACAGCCATCCTCTGTCCAAGTCGTTGCAGAGGTAGTAGCACCAGAAGAAGC 470
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 TGTTTCTGTACAGCCATCCTCTGTCCAAGTCGTAGCAGAGGTAGTAGCACCAGAAGAAGC 478
Query 471 TGCGAAACCAAAGGGACCAAGCCGATGTACTACTTGCAATAAGCGGGTTGGCCTGACTGG 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGCAAAACCAAAGGGACCAAGCCGATGTACTACTTGCAATAAGCGGGTTGGCCTGACTGG 538
Query 531 ATTCAAATGTCGCTGTGGGAGCCTCTTCTGCGGAACACACCGCTATGCAGACGTACATGA 590
|||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||||
Sbjct 539 ATTCAAATGTCGCTGTGGTAATCTCTTCTGCGGGACACACCGCTATGCAGACATACATGA 598
Query 591 CTGCTCCTTCAATTACCATGCTGCTGCGCAAGAGGCGATAGCTAAGGCAAACCCGGTTGT 650
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 CTGCTCCTTCAATTACCATGCTGCTGCGCAAGAAGCGATAGCTAAGGCAAACCCGGTTGT 658
Query 651 GAAAGCAGAGAAGCTTGACAAAATCTGAAAATCTAAGTAAACTTCTCTGGTTTCATCAGG 710
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 659 GAAAGCAGAGAAGCTTGACAAAATCTGAAATTCCAAGTAAACTTCTCTGATTTCATCAGG 718
Query 711 TGG-CCTGGTGTTTCCTTC-TCCTGTCTGTGTCTGGTTCAAGTAT-TCTCATGTTAAAAA 767
| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 TACACC-GGTGTTTCCTTCCTCCTGTCTGTGTCTGGTTCAAGTATCTCTCATGTTAAAAA 777
Query 768 GGTTTTATATAAGGTCGAATGAAAGCGTGCTTGATCTTTAGCGTCTTCCATCTCTCTG-- 825
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 778 GGTTTTATATAAGGTCGAATGAAAGCGTGCTTGATCTTTAGCTTCTTCCGTCTCTCTGCA 837
Query 826 -TG---GTG-TG-GAA-CTTTCTATTATCTGTGTTTGCAAGCAGAGAAACGTGCTCTTaa 878
| ||| || ||| |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 838 ATATTTGTGGTGTGAAACTTTTTATTATCTGTGTTTGCAAGCAGAGAAATGTGCTCTTAA 897
Query 879 aaaaaa--TGCTTTG-TGTGTTT-ATCTTTCT-ACTATTTTTGAGCACTGTGTT-ATTGT 932
|||||| ||||||| ||||||| |||||||| ||||||||||||||||||||| || ||
Sbjct 898 AAAAAAAATGCTTTGATGTGTTTTATCTTTCTTACTATTTTTGAGCACTGTGTTTAT-GT 956
Query 933 TTCCTGTTTGGTCTGTATCATATTGAGATTGTCTCTGTAGCTACATGAAGCTTATTTAAA 992
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 957 TTCCCGTTTGGTCTGTATCATATTGAGATTGTCTCTGTAGCTACATTAAGCTTATTTAAA 1016
Query 993 AA-GGCCTGTGTTTGTCCTTCAAT 1015
|| ||| |||||||||||||||||
Sbjct 1017 AAAGGCTTGTGTTTGTCCTTCAAT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5