BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51210.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923596 jgi|Araly1|923596|scaffold_104877.1 1884 0.0
Ahg487125 jgi|Araly1|487125|fgenesh2_kg.6__259__AT5G03490.1 529 2e-149
> Ahg923596 jgi|Araly1|923596|scaffold_104877.1
Length=1411
Score = 1884 bits (1020), Expect = 0.0
Identities = 1211/1304 (93%), Gaps = 10/1304 (1%)
Strand=Plus/Plus
Query 1 ATGAACAG-AGCAATGCCGCAGCCGCGAC-CGGAAACTATACGTGGCAGTTTAAAACCTC 58
|||||| | ||||||||||||||||| || || ||||| | | ||| |||||||||| |
Sbjct 9 ATGAAC-GTAGCAATGCCGCAGCCGCCACTTGG-AACTAAAGGCGGCGGTTTAAAACCGC 66
Query 59 ACATCATGGTGTTTCCATATCCAGCACAAGGCCACTTGCTTCCTCTTCTCGACTTAACCC 118
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 67 ATATCATGGTGTTTCCATATCCAGCACAAGGCCACTTGCTCCCTCTTCTCGACTTAACTC 126
Query 119 ATCAACTCTGTCTTCGTGGCCTCACAGTCTCCATCATCGTCACTCCTAAAAACCTTCCTT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATCAACTCTGTCTTCGTGGCCTCACAGTCTCCATCATCGTCACTCCTAAAAACCTTCCTT 186
Query 179 ACCTCTCTCCTCTTCTCTCCGCTCATCCATCCGCTGTTTCCGTCGTCACTTTACCTTTCC 238
|||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 187 ACCTCTCTTCTCTTCTCTCCGTTCATCCATCCGCCGTTTCCGTCGTCACTTTACCTTTTC 246
Query 239 CTCACC-ATCCTTTAATCCCTTCCGGGGTTGAAAACGTTAAAGATCTAGGTGGTTACGGA 297
||| || ||||| | ||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 247 CTC-CCAATCCTATGATCCCTTCCGGCGTTGAAAACGTTAAAGACCTCGGTGGTTACGGA 305
Query 298 AATCCCTTGATCATGGCTTCTCTTCGTCAGCTTCGAGAGCCTATCGTCAACTGGTTAAGT 357
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 306 AATCCCCTGATGATGGCTTCTCTTCGTCATCTTCGAGAGCCTATCGTCAACTGGTTAAGT 365
Query 358 TCTCATCCAAATCCACCGGTCGCTCTCATTTCTGATTTCTTCCTTGGATGGACCAAAGAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 366 TCTCATCCAAATCCACCGGTCGCTCTCATTTCTGATTTCTTCCTTGGATGGACTAAGGAT 425
Query 418 CTTGGTATTCCTCGCTTTGCTTTCTTCAGTTCTGGAGCATTCTTAGCTTCGATTCTCCAT 477
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTTGGTATCCCTCGCTTTGCTTTCTTCAGTTCTGGAGCATTCTTAGCTTCGATTCTCCAT 485
Query 478 TTTGTCTCTGACAAGCCTCATCTCTTTGAATCAACTGAGCCTGTCTGTTTATCGGATCTT 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTTGTCTCGGACAAGCCTCATCTCTTTGAATCAACTGAGCCTGTCTGTTTATCGGATCTT 545
Query 538 CCTCGCTCCCCTGTTTTCAAAACAGAGCATCTCCCGTCTTTAATCCCTCAGTCTCCATTA 597
||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 546 CCTCGTTCCCCTGTTTTTAGAACAGAGCATCTCCCGTCTTTAATCCCTCAGTCTCCATCA 605
Query 598 TCGCAAGATCTTGAAAGTGTTAAAGACAGTACCATGAATTTTTCGAGTTATGGTTGTATT 657
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 606 TCGCAAGATCTTGAAAGTGTAAAAGACAGTACCATGAATTTTTCGAGTTATGGTTGTATT 665
Query 658 TTCAATACTTGTGAGTGTCTGGAAGAGGATTACATGGAGTATGTGAAGCAGAAAGTGAGT 717
|||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||
Sbjct 666 TTCAATACTTGTGAGTGTTTGGAAGAAGAGTACATGGAGTATGTGAAGCAGAATGTGAGT 725
Query 718 GAGAACCGCGT-TTTCGGTGTTGGTCCGCTTTCTTCAGTCGGGTTAAGTAAGGAAGATTC 776
||||| || || ||| ||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 726 GAGAATCGGGTGTTT-GGTGTTGGTCCGCTTTCTTCAATCGGGTTAGGTAGGGAAGATTC 784
Query 777 CGTATCCAATGTAGACGCAAAGGCATTGTTGAGTTGGCTAGATGGATGTCCAGATGATTC 836
|| ||||||||||||||||||||| ||| |||||||||| || ||||||||||||| |||
Sbjct 785 CGAATCCAATGTAGACGCAAAGGCGTTGCTGAGTTGGCTCGACGGATGTCCAGATGGTTC 844
Query 837 AGTGCTCTACATCTGCTTCGGAAGTCAAAAGGTGTTAACCAAAGAGCAGTGTGATGATCT 896
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 845 TGTGCTTTACATCTGCTTCGGAAGTCAAAAGGTGTTAACTAAAGAACAGTGTGATGCTCT 904
Query 897 GGCTCTTGGTCTCGAGAAGAGTATGACCCGATTCGTATGGGTGGTTAAGAAAGACCCGAT 956
|||||| ||||| || |||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 905 GGCTCTAGGTCTTGAAAAGAGTATGACCCGGTTCGTTTGGGTGGTTAAGAAAGATCCGAT 964
Query 957 ACCGGATGGGTTTGAGGATCGGGTCGCAGGTCGAGGAATGATTGTGAGAGGGTGGGCTCC 1016
||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 965 ACCTGATGGGTTTGAGGATCGGATCGCAGGTCGAGGAATGATTGTTAGAGGGTGGGCTCC 1024
Query 1017 TCAAGTGGCTATGTTGAGTCATGTGGCGGTTGGCGGGTTCTTAATCCATTGTGGATGGAA 1076
||||||||||||||||||||||||||||||||| ||||| |||| ||| || ||||||||
Sbjct 1025 TCAAGTGGCTATGTTGAGTCATGTGGCGGTTGGTGGGTTTTTAAGCCACTGCGGATGGAA 1084
Query 1077 CTCGGTGCTGGAAGCGATGGCTAGCGGAACAATGATCTTGGCATGGCCAATGGAAGCAGA 1136
||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1085 CTCGGTGCTCGAAGCAATGGCTAGTGGAACAATGATCTTGGCTTGGCCCATGGAAGCAGA 1144
Query 1137 CCAGTTTGTAGATGCGAGGTTGGTAGTGGAGCATATGGGTGTGGCGGTTAGTGTATGTGA 1196
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 1145 CCAGTTTGTAGATGCGAGGTTGCTAGTGGAGCATATGGGTGTGGCGGTCAGTATATGTGA 1204
Query 1197 AGGGGGTAAGACTGTGCCTGACCCGTATGAGATGGGTCGGATTATCGCTGACACAATGGG 1256
|||||||||||||||||||| |||| ||||| || ||||| | || | ||| ||||||||
Sbjct 1205 AGGGGGTAAGACTGTGCCTGCCCCGCATGAGTTGAGTCGGGTCATAGGTGAAACAATGGG 1264
Query 1257 TGAG-AGTGGAGGCGAGGCGCGTGCTCGGGCTAAGGAGATGGGA 1299
|||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 1265 TGAGCA-TGGACGCGAGGCGCGTGCTCGGGCTAAGGAGATGGGA 1307
> Ahg487125 jgi|Araly1|487125|fgenesh2_kg.6__259__AT5G03490.1
Length=1481
Score = 529 bits (286), Expect = 2e-149
Identities = 982/1303 (75%), Gaps = 107/1303 (8%)
Strand=Plus/Plus
Query 54 ACCTCACATCA-TGGTGTTTCCATAT-CCAGCACAAGGCCACTTGCTTCCTCTTCTCGAC 111
||| ||||| | |||||||||||| | ||||||||||||||||| |||||||| || |||
Sbjct 97 ACCGCACAT-AGTGGTGTTTCCAT-TCCCAGCACAAGGCCACTTACTTCCTCTACTTGAC 154
Query 112 TTAACCCATCAACTCTGTCTTCGTGGCCTC-ACAGTCTCCATCATCGTCACTCCTAAAAA 170
||||| || |||||||| || ||||| || || |||||| ||||||||||||| |||
Sbjct 155 TTAACTCACCAACTCTGCCTCCGTGGAGTCAAC-GTCTCCGTCATCGTCACTCCCGGAAA 213
Query 171 CCTTCCTTACCTCTCTCCTCTTCTCTCCGCTCATCCATCCGCTGTTTCCGTC-GTCACTT 229
||| ||||||||||||||||||||||||||||||| ||| | || || || ||| ||
Sbjct 214 CCTAACTTACCTCTCTCCTCTTCTCTCCGCTCATCCCTCCTCCGTCACC-TCCGTCGTTT 272
Query 230 TACCTTTCCCTCAC-CATCCTTTAATCCCTTCCGGGGTTGAAAACGTTAAAGATC-TAGG 287
| |||||||||| | ||||||| | || || |||| || |||||||| ||||| | | ||
Sbjct 273 TCCCTTTCCCTC-CTCATCCTTCACTCTCTCCCGGCGTCGAAAACGTCAAAGA-CGTCGG 330
Query 288 TGGTT-ACGGAAATC-CCTTGATCATGGCTTCTCTTCGTCAGCTTCGAGAGCCTATCGTC 345
|| | ||||||| || |||||||||||||||||||||||||||||| || ||| ||
Sbjct 331 AAATTCA-GGAAATCTCCC-GATCATGGCTTCTCTTCGTCAGCTTCGAGATCCAATCATC 388
Query 346 AACTGGTTAAGTTCTCATCCAAATCCACCGGTCGCTCTCATTTCTGATTTCTTCCTTGGA 405
||||||| | |||||||| ||||| ||| |||||||||| || ||||||||||| ||
Sbjct 389 CACTGGTTCCGATCTCATCCTAATCCTCCGATCGCTCTCATCTCCGATTTCTTCCTCGGG 448
Query 406 TGGAC-CAAAGATCT-TGGTAT----TCC-T--CGCT---TT-GCTTTCTTCAGTTC-TG 451
||||| || ||||| || || || | | || || ||||||||| | | |
Sbjct 449 TGGACTCAC-GATCTCTGCAATCAAATCAGTATCCCTAGATTCGCTTTCTTC--TCCATC 505
Query 452 GAGCAT-T-CTTAGCTTC-GATTCTCCATTTT-GTCT-CTGACAAGCCTC-ATCTCTTTG 505
||| | | ||||| ||| | ||||||||||| | || | || || | || |||| |
Sbjct 506 -AGCTTCTTCTTAGTTTCCG-TTCTCCATTTTTG-CTTC-GAAAA-CATCGATCTAATCA 560
Query 506 AATCAACTGAGCCTG-T-C-TGTTTATCGGATCTTCCTCGCTCC-CCTG-TTTTCAAA-A 559
||||| | || || | | | | | | |||||||||||| | | || | |||||||| |
Sbjct 561 AATCACCGGATCC-GATTCATCTCC-T-GGATCTTCCTCG-TGCTCC-GATTTTCAAAGA 615
Query 560 CAGAGCATCTCCCGTCTTTAATCCCTC-A-GTCTCCATTA-TC-G-CAA-G-ATCTTGAA 612
||||||||| |||||| || ||| | | ||||||| | || | || | || | |||
Sbjct 616 -AGAGCATCTTCCGTCTATAGTCCGACGAAGTCTCCAA-ACTCCGTCACCGGATATCGAA 673
Query 613 AGTGTTAAAGACAG-TACCATGAATTT-TTCGAGTTATGGTTGTATTTTCAATACTTGTG 670
| | ||||| | ||| |||||| || ||| ||||| | | |||||||| ||| ||
Sbjct 674 ACAATCAAAGATTTCT-CCAAGAATTTGTT-GAGCTATGGATCTGTTTTCAATTCTTCTG 731
Query 671 AG-TGTCTGGAAGAGGATTA-CATGGAGTATGTGAAGCAGAA-AGTGAGTGA-GAACCGC 726
|| | ||| ||||| ||||| | || |||| ||||| |||| | || || | || | |
Sbjct 732 AGAT-TCTTGAAGATGATTATCTTG-AGTACGTGAAACAGAGGA-TGGGTCATGATCGG- 787
Query 727 GTTTTCGGTG-TTGGTCCGCTTTCTTCAGTCGGGTTAAGTAAGGAA--G-ATTCCG-TAT 781
||||| | | |||| ||||||| |||| |||||| | || || | |||| | | |
Sbjct 788 GTTTTTG-TAATTGGCCCGCTTTGTTCAATCGGGTCAGGTCTTAAATCGGATTCAGGT-T 845
Query 782 CCAATGTAGACGCAAAGGCATTGTTGAGTTGGCTAGATGGATGTCCAGAT-GATTCAGTG 840
| | | |||| | | | ||| | |||||| |||| |||| ||| | | | |||||
Sbjct 846 CTA-T--AGACCCGA-GT--TTGCTAAGTTGGTTAGACGGATCCCCAAACCGGT-CAGTG 898
Query 841 CTCTACATCTGCTTCGGAAGTCAAAAGGTGTTAACCAAAGAGCAGTGTGATGATCTGGCT 900
|| ||| | || |||||||||||||||| ||| || ||||| |||||||||| ||| |||
Sbjct 899 CTATACGTTTGTTTCGGAAGTCAAAAGGCGTTGACTAAAGACCAGTGTGATGCTCTTGCT 958
Query 901 CTTGGTCTC-GAGAAGAGTATGACCCGATTCGTATGGGTGGTTAAGAAAGACCCGATACC 959
|| || || || || || |||| || || || ||||||||||||||||| ||||||||
Sbjct 959 CTAGG-CTTAGAAAAAAGCGTGACTCGGTTTGTTTGGGTGGTTAAGAAAGATCCGATACC 1017
Query 960 GGATGGGTTTGAGGATCGGGTCGCAGGTCGAGGAATGATTGTGAGAGGGTGGGCT-CCTC 1018
|| ||||||||||||||||| | || || ||| || | || ||||| |||| | || |
Sbjct 1018 CGACGGGTTTGAGGATCGGGTTTCTGGACGGGGATTGGTGGTTAGAGGATGGGTTTCC-C 1076
Query 1019 AAG-TGGCTATGTTGAGTCATGTGGCGGTTGGCGGGTTCTTAATCCATTGTGGATGGAAC 1077
| | |||| | ||| | || ||||| ||||| || || || | ||||||||||||||||
Sbjct 1077 A-GCTGGCGGTCTTGCGACACGTGGCAGTTGGTGGATTTTTGAGCCATTGTGGATGGAAC 1135
Query 1078 TCGGTGCTGGAAGCGATGGCTAGCGGAACAATGATCTTGG-CATGGCCAATGGAAGCAGA 1136
|||||||| |||||||| | || || | ||||||||| | ||||| ||||| || ||
Sbjct 1136 TCGGTGCTTGAAGCGATAACGAGTGGGGCTGTGATCTTGGGC-TGGCCCATGGAGGCGGA 1194
Query 1137 CCAGTTTGTAGAT-GCGAGGTTGGTAGTGGAGCATATGGGTGTGGCGGTTAGTGTATGTG 1195
|||||||| || ||||||||| | | ||||||| ||||| | |||||||| || ||||
Sbjct 1195 TCAGTTTGT-GAACGCGAGGTTGCTTGCGGAGCATTTGGGTATTGCGGTTAGGGTTTGTG 1253
Query 1196 AAGGGGGT-AAGACTGTGCCTGACCCG-TATGAGATGGGTCGGATTATCGCTGACACAAT 1253
|||| ||| || ||||| ||||||||| | |||| |||||||| | || || || || ||
Sbjct 1254 AAGGTGGTGAA-ACTGTACCTGACCCGGT-TGAGCTGGGTCGGGTCATAGCGGAAACGAT 1311
Query 1254 GGGTGAGAGTGGAGGCGAGGCG-CGTGCTCGGGCTAAGGAGAT 1295
| ||||| | ||| |||||| | | ||||||||| |||||||
Sbjct 1312 GAGTGAGGGAGGACGCGAGGTGGC-TGCTCGGGCGGAGGAGAT 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5