BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51220.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923597 jgi|Araly1|923597|scaffold_104878.1 1528 0.0
Ahg486217 jgi|Araly1|486217|fgenesh2_kg.5__2209__AT3G57670.1 418 5e-116
> Ahg923597 jgi|Araly1|923597|scaffold_104878.1
Length=1045
Score = 1528 bits (827), Expect = 0.0
Identities = 967/1031 (94%), Gaps = 24/1031 (2%)
Strand=Plus/Plus
Query 96 tttgtcttctCCTCAGAGTCATGTCTAATCCAGCTTGTTCGAATCTCTTCAACAATGGAT 155
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TTTGTCTTCTCCTCAAAGTCATGTCTAATCCAGCTTGTTCCAATCTCTTCAACAATGGAT 60
Query 156 GTGACCATAATAGCTTCAACTATTCCACTTCTCTCTCTTACATTTACAACTCTCACGGTA 215
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GTGACCATAATAACTTCAACTATTCCACTTCTCTCTCTTACATTTACAACTCTCACGAAA 120
Query 216 GCTACTATTACTCTAATACCACAAACCCTAATTACATTAATCATACTCATACCACTTCCA 275
| | | ||| || |||||||||||||||||||||||| |||||||| ||
Sbjct 121 G---C---T--TCT-AT------TACCCTAATTACATTAATCATACTCCTACCACTTTCA 165
Query 276 CTTCCCCTAACTCACCCCCACTAAGAGAAGCTCTTCCTCTTCTTAGCTTAAGCCCCATAA 335
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTTCCCCTAACTCACCTCCACTAAGAGAAGCTCTTCCTCTTCTTAGCTTAAGCCCCATAA 225
Query 336 GGCACCAAGAACAACAAGACCAACACTATTTCATGGACACCCATCAAATTAGCTCTTCAA 395
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 226 GGCACCAAGAACAACAAGATCAACACTATTTCATGGACACCGATCAAATCAGCTCTTCAA 285
Query 396 ACTTTCTTGATGATCCTCTTGTGACTGTGGATCTTCATCTAGGGTTACCAAACTACGGTG 455
|||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 286 ACTTTCTTGATGATCCTCATGTTACTGTGGATCTTCATTTAGGGCAACCAAACTACGGTG 345
Query 456 TTGGTGAGAGCATTAGGAGCAATATTGCTCCTGATGCAACCACGGACGAGCAAGATCAAG 515
|||| |||| |||||||||| |||||||||||||| ||||||| | || | |||||||
Sbjct 346 TTGGAGAGAACATTAGGAGCTATATTGCTCCTGATACAACCAC-G--GA-C--GATCAAG 399
Query 516 ATCATGACCGAGGAGTAGAAGTCACAGTTGAGTCCCACCTTGATGATGATGATGATCATC 575
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 400 ATCATGACCGAGGTGTAGAAGTCACAGTTGAGTCCTACCTTCATGATGATGATG---ATC 456
Query 576 ATGGAGATCTACACAGAGGTCATCACTATTGGATTCCTACTCCTTCTCAGATTTTGATTG 635
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ATGGAGATCTACACAGAGCTCATCACTATTGGATTCCTACTCCTTCTCAGATTTTGATTG 516
Query 636 GTCCTACACAGTTCACTTGTCCTCTTTGCTTCAAGACATTCAACAGATACAACAACATGC 695
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 517 GTCCTACACAGTTCTCTTGTCATCTTTGCCTCAAGACATTCAACAGATACAACAACATGC 576
Query 696 AGATGCACATGTGGGGACACGGCTCACAATACAGAAAGGGACCAGAATCCTTAAGAGGAA 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AGATGCACATGTGGGGACACGGCTCACAATACAGAAAGGGACCAGAATCCTTAAGAGGAA 636
Query 756 CCCAACCAACAGGAATGCTAAGACTACCATGTTTCTGCTGTGCACCCGGTTGCAAGAACA 815
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 637 CCCAACCAACAGGAATGCTAAGACTACCATGTTTCTGCTGTGCACCAGGCTGCAAGAACA 696
Query 816 ACATTGACCACCCACGAGCCAAGCCTCTTAAGGACTTTCGAACCCTCCAAACACATTACA 875
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 697 ACATTGACCACCCGCGAGCCAAGCCTCTTAAGGACTTTCGAACCCTTCAAACACATTACA 756
Query 876 AACGTAAACATGGGTCTAAACCATTTGCTTGTCGTATGTGTGGTAAGGCCTTTGCAGTGA 935
|||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 757 AACGTAAACACGGGTCTAGACCATTTGCTTGTCGTAGGTGTGGTAAGGCCTTTGCAGTGA 816
Query 936 AAGGAGATTGGAGAACGCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCTCTTGTGGCT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AAGGAGATTGGAGAACGCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCTCTTGTGGCT 876
Query 996 CGGATTTTAAGCACAAGAGGTCGCTTAAGGACCATGTCAAGGCCTTTGGAAATGGTCATG 1055
| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 877 CTGATTTTAAGCACAAGAGGTCGCTTAAGGACCACGTCAAGGCCTTTGGGAGTGGTCATG 936
Query 1056 TTCCTTGTGGGATTGATAGTTTTGGAGGAGATCATGAGGACTACTATGATGCTGCTTCTG 1115
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 937 TTCCTTGTGGGATTGATAGTTTTGGAGGAGATCATGAGGACTACTATGAGGCTGCTTCTG 996
Query 1116 ATATCGAGCAA 1126
|||||||||||
Sbjct 997 ATATCGAGCAA 1007
> Ahg486217 jgi|Araly1|486217|fgenesh2_kg.5__2209__AT3G57670.1
Length=1503
Score = 418 bits (226), Expect = 5e-116
Identities = 387/463 (84%), Gaps = 18/463 (4%)
Strand=Plus/Plus
Query 602 TATTGGATTCCTACTCCTTCTCAGATTTTGATTGGTCCTACACAGTTCACTTGTCCTCTT 661
|||||||| ||||| |||||||||||| | ||||| ||||| |||||| | |||||| ||
Sbjct 625 TATTGGATCCCTACACCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCATGTCCTGTT 684
Query 662 TGCTTCAAGACATTCAACAGATACAACAACATGCAGATGCACATGTGGGGACACGGCTCA 721
|||||||| || ||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 685 TGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCA 744
Query 722 CAATACAGAAAGGGACCAGAATC-CTTAAGAGGAACCCAACCAACAGGAATGCTAAGACT 780
||||||||||| ||||| ||||| || ||| ||||| || ||||||||||||||||| ||
Sbjct 745 CAATACAGAAAAGGACCTGAATCTCT-AAGGGGAACACAGCCAACAGGAATGCTAAGGCT 803
Query 781 ACCATGTTTCTGCTGTGCACCCGGTTGCAAG-AACAACATTGACCACCCACGAGCCAAGC 839
|| || | |||||| ||||| || ||| | |||||||||||||| ||| | || ||||
Sbjct 804 TCCGTGCTACTGCTGCGCACCAGGCTGCC-GCAACAACATTGACCATCCAAGGGCAAAGC 862
Query 840 CTCTTAAGGACTTTC-GAACCCTCCAAACACATTACAAACGTAAACATGGG-TCTAAACC 897
|||| || ||||| | |||| || ||||||||||||||| | ||||||||| || |||||
Sbjct 863 CTCTCAAAGACTT-CAGAACACTTCAAACACATTACAAAAGGAAACATGGGATC-AAACC 920
Query 898 ATTTGCTTGTCGTATG---TGTGGTAAGGCCTTT-GCAGTGAAAGGAGATTGGAGAACGC 953
||| | ||| ||| | ||||| ||||| ||| ||||| ||| ||||||||||| |
Sbjct 921 -TTT-CATGT-GTAGGAAATGTGGAAAGGC-TTTCGCAGTCCGAGGGGATTGGAGAACAC 976
Query 954 ATGAGAAGAATTGTGGAAAGCTTTGGTATTGC-TCTTGTGGCTCGGATTTTAAGCACAAG 1012
|||||||||||||||| ||||||||||||||| | |||||| || ||||||||||||||
Sbjct 977 ATGAGAAGAATTGTGGCAAGCTTTGGTATTGCAT-TTGTGGATCTGATTTTAAGCACAAA 1035
Query 1013 AGGTCGCTTAAGGACCATGTCAAGGCCTTTGGAAATGGTCATG 1055
|| || || || || ||| ||||||| ||||||||||| ||||
Sbjct 1036 AGATCTCTCAAAGATCATATCAAGGCTTTTGGAAATGGCCATG 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5