BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51240.1 Length=384 Score E Sequences producing significant alignments: (Bits) Value Ahg923599 jgi|Araly1|923599|scaffold_104880.1 577 2e-164 Ahg337272 jgi|Araly1|337272|fgenesh1_pg.C_scaffold_1003837 544 2e-154 > Ahg923599 jgi|Araly1|923599|scaffold_104880.1 Length=425 Score = 577 bits (312), Expect = 2e-164 Identities = 361/385 (94%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 1 ATGTATTTTGGGCAAAATGAAGCTTGCaaaaaaaaTCATGTAGTGATTCATAACGAACTC 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGTATTTTGGGCTAAATGAAGCTTGCAAAAAAAATCATGTAGTGATTCATAACGAACTC 80 Query 61 GGTCCTGGTATTGATCTCAACATTGCATGCCGACAATTCAGCATAGAGCGCACACCTTCA 120 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 81 GGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCATAGAGCGTACACCTTCA 140 Query 121 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTCGAGGATAATAAT 180 |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| Sbjct 141 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATGTCATTGAATTCGAAGATAATAAT 200 Query 181 CAGCTACCTCATGGTGAAAGATGGTATTGTCTGCTTAGTCACGGTACTAGACCAAAGTAT 240 ||||||||||||||||||| |||||||||| |||||||||| || ||||| ||||| ||| Sbjct 201 CAGCTACCTCATGGTGAAAAATGGTATTGTATGCTTAGTCATGGGACTAGGCCAAAATAT 260 Query 241 TGGTATGATATTGAAGTATATCGTCAAGGCTATTATCCAAGTTGTGGTCAGCTACGCTCA 300 ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 261 TGGTATGATATCGAAGTATATCGTCAAGGCTATTATCCTCGATGTGGTCAGCTACGCTCA 320 Query 301 TGGATTGCTAAACAAG-ATGGAATTTGGTTTACAAGAAGATATGATAGCCCGCCAGGACA 359 ||||| || ||| | | |||| ||||||||||||||||||||| |||||||||| ||||| Sbjct 321 TGGATAGCCAAA-ACGGATGGGATTTGGTTTACAAGAAGATATAATAGCCCGCCGGGACA 379 Query 360 TGTTCTTAATTGGAAAATTCAGTAA 384 ||||||||||||||||||||||||| Sbjct 380 TGTTCTTAATTGGAAAATTCAGTAA 404 > Ahg337272 jgi|Araly1|337272|fgenesh1_pg.C_scaffold_1003837 Length=384 Score = 544 bits (294), Expect = 2e-154 Identities = 357/387 (92%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 1 ATGTATTTTGGGCA-AAATGAAGCTTGCaaaaaaaaTCATGTAGTGATTCATAACGAACT 59 |||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1 ATGTATTTTGGG-ATAAATGAAGCTTGCAAGAAAAATCATGTAGTAATTCATAACGAACT 59 Query 60 CGGTCCTGGTATTGATCTCAACATTGCATGCCGACAATTCAGCATAGAGCGCACACCTTC 119 ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| Sbjct 60 CGGTCCTGGTATTGATCTCAATATTGCATGCCGGCAACTCAGCATAGAGCGCACACCTTC 119 Query 120 AATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTCGAGGATAATAA 179 || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 120 AAGGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTTGCGGATAATAA 179 Query 180 TCAGCTACCTCATGGTGAAAGATGGTATTGTCTGCTTAGTCACGGTACTAGACCAAAGTA 239 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || Sbjct 180 TCAGCTACCTCATGGTGAAAAATGGTATTGTCTGCTTAGTCACGGAACTAGACCAAAATA 239 Query 240 TTGGTATGATATTGAAGTATAT-CGTCAAGGCTATTATCCAAGTTGTGGTCAGCTACGCT 298 ||||| |||||||||||||||| | ||||| ||||||||| | |||||||||||||||| Sbjct 240 TTGGTTTGATATTGAAGTATATGC-TCAAGCCTATTATCCTCGATGTGGTCAGCTACGCT 298 Query 299 CATGGATTGCTAAACAAG-ATGGAATTTGGTTTACAAGAAGATATGATAGCCCGCCAGGA 357 |||||||||||| | ||| |||| ||||||||||||||||||||| |||| |||||||| Sbjct 299 CATGGATTGCTAGA-AAGGATGGGATTTGGTTTACAAGAAGATATCATAGTCCGCCAGGG 357 Query 358 CATGTTCTTAATTGGAAAATTCAGTAA 384 ||||| ||| |||||||||| |||||| Sbjct 358 CATGTACTTGATTGGAAAATCCAGTAA 384 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13736012040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5