BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51240.1
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923599 jgi|Araly1|923599|scaffold_104880.1 577 2e-164
Ahg337272 jgi|Araly1|337272|fgenesh1_pg.C_scaffold_1003837 544 2e-154
> Ahg923599 jgi|Araly1|923599|scaffold_104880.1
Length=425
Score = 577 bits (312), Expect = 2e-164
Identities = 361/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 1 ATGTATTTTGGGCAAAATGAAGCTTGCaaaaaaaaTCATGTAGTGATTCATAACGAACTC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTATTTTGGGCTAAATGAAGCTTGCAAAAAAAATCATGTAGTGATTCATAACGAACTC 80
Query 61 GGTCCTGGTATTGATCTCAACATTGCATGCCGACAATTCAGCATAGAGCGCACACCTTCA 120
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 81 GGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCATAGAGCGTACACCTTCA 140
Query 121 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTCGAGGATAATAAT 180
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 141 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATGTCATTGAATTCGAAGATAATAAT 200
Query 181 CAGCTACCTCATGGTGAAAGATGGTATTGTCTGCTTAGTCACGGTACTAGACCAAAGTAT 240
||||||||||||||||||| |||||||||| |||||||||| || ||||| ||||| |||
Sbjct 201 CAGCTACCTCATGGTGAAAAATGGTATTGTATGCTTAGTCATGGGACTAGGCCAAAATAT 260
Query 241 TGGTATGATATTGAAGTATATCGTCAAGGCTATTATCCAAGTTGTGGTCAGCTACGCTCA 300
||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 261 TGGTATGATATCGAAGTATATCGTCAAGGCTATTATCCTCGATGTGGTCAGCTACGCTCA 320
Query 301 TGGATTGCTAAACAAG-ATGGAATTTGGTTTACAAGAAGATATGATAGCCCGCCAGGACA 359
||||| || ||| | | |||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 321 TGGATAGCCAAA-ACGGATGGGATTTGGTTTACAAGAAGATATAATAGCCCGCCGGGACA 379
Query 360 TGTTCTTAATTGGAAAATTCAGTAA 384
|||||||||||||||||||||||||
Sbjct 380 TGTTCTTAATTGGAAAATTCAGTAA 404
> Ahg337272 jgi|Araly1|337272|fgenesh1_pg.C_scaffold_1003837
Length=384
Score = 544 bits (294), Expect = 2e-154
Identities = 357/387 (92%), Gaps = 6/387 (2%)
Strand=Plus/Plus
Query 1 ATGTATTTTGGGCA-AAATGAAGCTTGCaaaaaaaaTCATGTAGTGATTCATAACGAACT 59
|||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 ATGTATTTTGGG-ATAAATGAAGCTTGCAAGAAAAATCATGTAGTAATTCATAACGAACT 59
Query 60 CGGTCCTGGTATTGATCTCAACATTGCATGCCGACAATTCAGCATAGAGCGCACACCTTC 119
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 60 CGGTCCTGGTATTGATCTCAATATTGCATGCCGGCAACTCAGCATAGAGCGCACACCTTC 119
Query 120 AATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTCGAGGATAATAA 179
|| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 120 AAGGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTTGCGGATAATAA 179
Query 180 TCAGCTACCTCATGGTGAAAGATGGTATTGTCTGCTTAGTCACGGTACTAGACCAAAGTA 239
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 180 TCAGCTACCTCATGGTGAAAAATGGTATTGTCTGCTTAGTCACGGAACTAGACCAAAATA 239
Query 240 TTGGTATGATATTGAAGTATAT-CGTCAAGGCTATTATCCAAGTTGTGGTCAGCTACGCT 298
||||| |||||||||||||||| | ||||| ||||||||| | ||||||||||||||||
Sbjct 240 TTGGTTTGATATTGAAGTATATGC-TCAAGCCTATTATCCTCGATGTGGTCAGCTACGCT 298
Query 299 CATGGATTGCTAAACAAG-ATGGAATTTGGTTTACAAGAAGATATGATAGCCCGCCAGGA 357
|||||||||||| | ||| |||| ||||||||||||||||||||| |||| ||||||||
Sbjct 299 CATGGATTGCTAGA-AAGGATGGGATTTGGTTTACAAGAAGATATCATAGTCCGCCAGGG 357
Query 358 CATGTTCTTAATTGGAAAATTCAGTAA 384
||||| ||| |||||||||| ||||||
Sbjct 358 CATGTACTTGATTGGAAAATCCAGTAA 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13736012040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5