BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51250.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337272 jgi|Araly1|337272|fgenesh1_pg.C_scaffold_1003837 582 9e-166
Ahg923599 jgi|Araly1|923599|scaffold_104880.1 510 4e-144
> Ahg337272 jgi|Araly1|337272|fgenesh1_pg.C_scaffold_1003837
Length=384
Score = 582 bits (315), Expect = 9e-166
Identities = 362/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 100 ATGTATTTTGGGATAAATGAAGCTTGCaaaaaaaaTCATGTAGTAATTCATAACGAAATC 159
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1 ATGTATTTTGGGATAAATGAAGCTTGCAAGAAAAATCATGTAGTAATTCATAACGAACTC 60
Query 160 GGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCCCAAAACGCACACCTTCA 219
|||||||||||||||||||| ||||||||||||||| ||||| | | ||||||||||||
Sbjct 61 GGTCCTGGTATTGATCTCAATATTGCATGCCGGCAACTCAGCATAGAGCGCACACCTTCA 120
Query 220 ATGTTTCACACCCTAAAGTACAAAGATCCTTTTTACATCATTGAGTTCGCGGACAACAAT 279
| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 121 AGGTTTCACACCCTAAAGTACAAAGATCCTTTTTATATCATTGAGTTTGCGGATAATAAT 180
Query 280 CAGCTACCTCACGGTGAGAAATGGTATTGTCTGATTAGTCACGGAACAAGACCAAAATAT 339
||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 181 CAGCTACCTCATGGTGAAAAATGGTATTGTCTGCTTAGTCACGGAACTAGACCAAAATAT 240
Query 340 TGGTTTGATATTGAAGTATATCG-TCAAGGCTATTATCCTCGATGTGGTCAGCTACGCTC 398
||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 241 TGGTTTGATATTGAAGTATAT-GCTCAAGCCTATTATCCTCGATGTGGTCAGCTACGCTC 299
Query 399 ATGGATTGCTAGAAAGGATGGGATTTGGTTTACAAGAAAATATCATAGTCCACCAGGGCA 458
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 300 ATGGATTGCTAGAAAGGATGGGATTTGGTTTACAAGAAGATATCATAGTCCGCCAGGGCA 359
Query 459 CGTACTTGATTGGAAAATCCAGTAA 483
||||||||||||||||||||||||
Sbjct 360 TGTACTTGATTGGAAAATCCAGTAA 384
> Ahg923599 jgi|Araly1|923599|scaffold_104880.1
Length=425
Score = 510 bits (276), Expect = 4e-144
Identities = 358/398 (90%), Gaps = 4/398 (1%)
Strand=Plus/Plus
Query 88 TTAGTTACAACTATGTATTTTGGGATAAATGAAGCTTGCaaaaaaaaTCATGTAGTAATT 147
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 9 TTAGTTACTACTATGTATTTTGGGCTAAATGAAGCTTGCAAAAAAAATCATGTAGTGATT 68
Query 148 CATAACGAAATCGGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCCCAAAA 207
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 69 CATAACGAACTCGGTCCTGGTATTGATCTCAACATTGCATGCCGGCAATTCAGCATAGAG 128
Query 208 CGCACACCTTCAATGTTTCACACCCTAAAGTACAAAGATCCTTTTTACATCATTGAGTTC 267
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 129 CGTACACCTTCAATGTTTCACACCCTAAAGTACAAAGATCCTTTTTATGTCATTGAATTC 188
Query 268 GCGGACAACAATCAGCTACCTCACGGTGAGAAATGGTATTGTCTGATTAGTCACGGAACA 327
| || || |||||||||||||| ||||| |||||||||||| || ||||||| || ||
Sbjct 189 GAAGATAATAATCAGCTACCTCATGGTGAAAAATGGTATTGTATGCTTAGTCATGGGACT 248
Query 328 AGACCAAAATATTGGTTTGATATTGAAGTATATCGTCAAGGCTATTATCCTCGATGTGGT 387
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 249 AGGCCAAAATATTGGTATGATATCGAAGTATATCGTCAAGGCTATTATCCTCGATGTGGT 308
Query 388 CAGCTACGCTCATGGATTGCTAGAAA-GGATGGGATTTGGTTTACAAGAAAATATCATAG 446
||||||||||||||||| || | ||| ||||||||||||||||||||||| |||| ||||
Sbjct 309 CAGCTACGCTCATGGATAGCCA-AAACGGATGGGATTTGGTTTACAAGAAGATATAATAG 367
Query 447 TCCACCAGGG-CACGTACTTGATTGGAAAATCCAGTAA 483
|| || ||| || || ||| |||||||||| ||||||
Sbjct 368 CCCGCC-GGGACATGTTCTTAATTGGAAAATTCAGTAA 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5