BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51260.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474240 jgi|Araly1|474240|fgenesh2_kg.1__4194__AT1G51260.1 2141 0.0
Ahg923607 jgi|Araly1|923607|scaffold_104888.1 1738 0.0
> Ahg474240 jgi|Araly1|474240|fgenesh2_kg.1__4194__AT1G51260.1
Length=1346
Score = 2141 bits (1159), Expect = 0.0
Identities = 1286/1348 (95%), Gaps = 6/1348 (0%)
Strand=Plus/Plus
Query 1 TTTCAATTCTCTAATCTCCCAAAAAGAATTTGAGAACAAAGATAACAGTCATCCTCTGTT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCATTTCTCTAATCTCCCAAAAAGAATTTGAGAACAAAGATAACAGTCATCCTCTGTT 60
Query 61 GGTGTCTTCTTCAACAATTTTTCATATTCTTCTGTTGCTGCTTTGTGTTGTTCCTTATCT 120
|||||||||| ||||||||||| |||| | ||||||||||||||||||||||||| |||
Sbjct 61 GGTGTCTTCTCCAACAATTTTTGGTATTGTCCTGTTGCTGCTTTGTGTTGTTCCTTCTCT 120
Query 121 CTCTCAGACATGAAGATCCCTGCGGCTCTTGTCTTTATCCCTGTTGGTGTCCTCTTCTTG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CTCTCAGACATGAAGATCCCTGCGGCTCTTGCCTTTATCCCTGTTGGTGTCCTCTTCTTG 180
Query 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTTATCATTGTTCGTCCATTC 240
Query 241 TCAAGAAGTTTGTATAGAAGAATAAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGAAGTTTGTATAGAAGAATCAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300
Query 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACG-TCGATGCAGAGAC 359
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACGCT-GATGCGGAGAC 359
Query 360 TCTAGAGTTAATTGGGAAAGAACACGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TCTAGAGTTGATTGGGAAAGAACATGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419
Query 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGTAGGTTGTCTTGGAAGCTCATTAGCCAT 479
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGCAGGTTGTCTTGGAAGCTCTTTAGCCAT 479
Query 480 CATGAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATTA 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 CATGAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCAATGTGGTTTTCGGATTA 539
Query 540 CATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAACG 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CATTTTCTTGGAAAGAAGTTGGGCCAAAGATGAGAATACCCTCAAGGCAGGTTTTAAACG 599
Query 600 ACTTGAAGACTTTCCAATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCAC 659
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTGAGGACTTTCCTATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCAC 659
Query 660 TCAGGAGAAGCTTGAAGCTGCTCAAGAGTACGCCTCTATCAGAAGCTTACCGTCTCCTCG 719
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TCAAGAGAAGCTTGAAGCTGCTCAAGATTACGCCTCTATCAGAAGCTTACCGTCTCCTCG 719
Query 720 AAATGTTTTGATTCCTCGTACAAAGGGATTTGTTTCGGCAGTGTCTGAAATACGGTCATT 779
||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 720 AAATGTTCTGATTCCTCGTACAAAGGGTTTTGTTTCGGCGGTGTCTCAAATACGGTCATT 779
Query 780 TGTTCCTGCAATATATGACTGTACCTTAACCGTTCATAACAATCAGCCTACACCAACTCT 839
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 780 TGTTCCTGCAATTTATGACTGTACCTTAACTGTTCATAACAATCACCCTACACCAACTCT 839
Query 840 GCTTAGGATGTTCAGTGGACAATCATCTGAGATAAATTTGCAGATGAGACGTCACAAAAT 899
||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 840 GCTTAGGATGTTCAGTGGACAATCATCTGAGGTGAATTTGCTGATGAGACGTCACAAAAT 899
Query 900 GAGTGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCAC 959
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 900 GAGTGAGTTGCCAGAAACCGATGATGGTATTGCACAATGGTGCCAAGATCTCTTTATCAC 959
Query 960 CAAGGATGCTCAACTTGAGAAATACTTCACAAAAGACGTTTTCAGCGACTTGGAAGTTCA 1019
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 960 GAAGGATGCTCAACTTGAGAAATATTTTACAAAAGACGTTTTCAGCGACTTGGAAGTTCA 1019
Query 1020 CCAAATTAACCGGCCAATCAAGCCATTAATCGTGGTCATCATTTGGTTAGGT-TTCCTTG 1078
|||||| |||||||||||||| ||||| ||||||||||||||||||||| || ||| |
Sbjct 1020 CCAAATCAACCGGCCAATCAAACCATTGATCGTGGTCATCATTTGGTTATGTCTTC-TAA 1078
Query 1079 TATTCGGTGGTTTCAAGCTACTGCAATGGCTTTCAATAGTGGCCTCGTGGAAGATCATTC 1138
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1079 TATTCGGTGGTTTCAAGCTACTCCAATGGCTCTCCATAGTGGCCTCGTGGAAGATCATTC 1138
Query 1139 TTTTGTTTGTGTTCTTCTTGGTCATTGCAACTATAACAATGCAAATACTAATTCAATCGT 1198
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1139 TTTTGTTTGTGTTCTTCTTGGTGATTGCAACTATAACAATGCAAGTACTAATTCAATCGT 1198
Query 1199 CTGAGTCACAACGTTCAACTCCAGCCAAGAGACCTCTACAAGAACAGCTTATTTCTGCTT 1258
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1199 CTGAGTCACAACGTTCCACTCCTGCCAAGAGACCTCTACAAGAACAGCTTATTTCTGCCT 1258
Query 1259 AGGACAAAAGAAAACTCTATTTAAGCCACATATTTTACACTGCATTGTTCCTTCACTCAA 1318
|| |||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1259 AGTACAAAAGAAACCTCTGTTTTAGCCACATATTTTACATTGCATTGTTCCTTCACTCAA 1318
Query 1319 --ATGTAAACATAATTGTTTTTGTTAGT 1344
|| |||||||||||||||||||||||
Sbjct 1319 CCATTTAAACATAATTGTTTTTGTTAGT 1346
> Ahg923607 jgi|Araly1|923607|scaffold_104888.1
Length=1558
Score = 1738 bits (941), Expect = 0.0
Identities = 1076/1140 (94%), Gaps = 14/1140 (1%)
Strand=Plus/Plus
Query 122 TCTCAGACATGA-AGATCCCTGCGGCTCTTGTCTTTATCCCTGTTGGTGTCCTCTTCTTG 180
||||| |||||| | |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 16 TCTCATACATGACA-ATCCCTGCTGCTCTTGTCTTTATCCCTGTTGGCATCCTCTTCTTG 74
Query 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 240
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 75 GTCTCAGGGCTCATCGTCAACAGCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 134
Query 241 TCAAGAAGTTTGTATAGAAGAATAAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 135 TCAAGAAGTTTGTATAGAAGAATCAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 194
Query 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACGTC-GATGCAGAGAC 359
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 195 ATATGGTTGTCTGATTGGTGGGCTTGTATAAAGATCAATTTATACG-CTGATGCAGAGAC 253
Query 360 TCTAGAGTTAATTGGGAAAGAACACGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 254 TCTAGAGTTAATTGGGAAAGAACATGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 313
Query 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGTAGGTTGTCTTGGAAGCTCATTAGCCAT 479
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 314 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGCAGGTTGTCTTGGAAGCTCTTTAGCCAT 373
Query 480 CAT-GAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATT 538
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CATGGCA-AAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATT 432
Query 539 ACATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAAC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ACATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAAC 492
Query 599 GACTTGAAGACTTTCCAATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCA 658
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 493 GACTTGAGGACTTTCCTATGACATTTTGGCTAGCTCTTTTCGTTGAAGGAACTCGTTTCA 552
Query 659 CTCAGGAGAAGCTTGAAGCTGCTCAAGAGTACGCCTCTATCAGAAGCTTACCGTCTCCTC 718
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 553 CTCAAGAGAAGCTTGAAGCTGCTCAAGATTACGCCTCTATCAGAAGCTTACCATCACCTC 612
Query 719 GAAATGTTTTGATTCCTCGTACAAAGGGATTTGTTTCGGCAGTGTCTGAAATACGGTCAT 778
|||||||| |||||||||||||||||||||||||||| || || ||| ||||||||||||
Sbjct 613 GAAATGTTCTGATTCCTCGTACAAAGGGATTTGTTTCAGCGGTATCTCAAATACGGTCAT 672
Query 779 TTGTTCCTGCAATATATGACTGTACCTTAACCGTTCATAACAATCAGCCTACACCAACTC 838
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 673 TTGTTCCTGCAATTTATGACTGCACCTTTACCGTTCATAACAATCAGCCTACACCAACTC 732
Query 839 TGCTTAGGATGTTCAGTGGACAATCATCTGAGATAAATTTGCAGATGAGACGTCACAAAA 898
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 733 TGCTTAGGATGTTCAGTCGACAATCATCTGAGGTAAATTTGCAGATGAGACGTCACAAAA 792
Query 899 TGAGTGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCA 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGAGCGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCA 852
Query 959 CCAAGGATGCTCAACTTGAGAAATACTTCACAAAAGACGT-TTTCAGCGACTTGGAAGTT 1017
||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||
Sbjct 853 CCAAGGATGCTCAACTTGAGAAATACTTCACAAAAAACGTATTT-AGCGACTTGGACGTT 911
Query 1018 CACCAAATTAACCGGCCAATCAAGCCATTAATCGTGGTCATCATTTGGTTAG-GT-TTCC 1075
|||||||| |||||||||||||| ||||| |||||||||||||||||||| | || |||
Sbjct 912 CACCAAATCAACCGGCCAATCAAACCATTGATCGTGGTCATCATTTGGTT-GTGTCTTC- 969
Query 1076 TTGTATTCGGTGGTTTCAAGCTACTGCAATGGCTTTCAATAGTGGCCTCGTGGAAGATCA 1135
|| ||| ||||||||| |||||| | ||||||||||| |||||||||||||||||||||
Sbjct 970 TTATATACGGTGGTTTTAAGCTATTCCAATGGCTTTCCTTAGTGGCCTCGTGGAAGATCA 1029
Query 1136 TTCTTTTGTTTGTGTTCTTCTTGGTCATTGCAACTATAACAATGCAAATACTAATTCAAT 1195
||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 1030 TTCTTTTGTTTGTGTTCTTCTTGGTGATTGCAACTATAACAATGCAAGTACTTGTTCAAA 1089
Query 1196 CGTCTGAGTCACAACGTT-CAACTCCAGCCAAGAGACCTCTACAAGAACAGCTTATTTCT 1254
|||||||||||||||||| || |||| |||||||||||| || |||||||||||||||||
Sbjct 1090 CGTCTGAGTCACAACGTTTCA-CTCCTGCCAAGAGACCTTTAGAAGAACAGCTTATTTCT 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5