BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51260.1 Length=1344 Score E Sequences producing significant alignments: (Bits) Value Ahg474240 jgi|Araly1|474240|fgenesh2_kg.1__4194__AT1G51260.1 2141 0.0 Ahg923607 jgi|Araly1|923607|scaffold_104888.1 1738 0.0 > Ahg474240 jgi|Araly1|474240|fgenesh2_kg.1__4194__AT1G51260.1 Length=1346 Score = 2141 bits (1159), Expect = 0.0 Identities = 1286/1348 (95%), Gaps = 6/1348 (0%) Strand=Plus/Plus Query 1 TTTCAATTCTCTAATCTCCCAAAAAGAATTTGAGAACAAAGATAACAGTCATCCTCTGTT 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTCATTTCTCTAATCTCCCAAAAAGAATTTGAGAACAAAGATAACAGTCATCCTCTGTT 60 Query 61 GGTGTCTTCTTCAACAATTTTTCATATTCTTCTGTTGCTGCTTTGTGTTGTTCCTTATCT 120 |||||||||| ||||||||||| |||| | ||||||||||||||||||||||||| ||| Sbjct 61 GGTGTCTTCTCCAACAATTTTTGGTATTGTCCTGTTGCTGCTTTGTGTTGTTCCTTCTCT 120 Query 121 CTCTCAGACATGAAGATCCCTGCGGCTCTTGTCTTTATCCCTGTTGGTGTCCTCTTCTTG 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 CTCTCAGACATGAAGATCCCTGCGGCTCTTGCCTTTATCCCTGTTGGTGTCCTCTTCTTG 180 Query 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 240 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTTATCATTGTTCGTCCATTC 240 Query 241 TCAAGAAGTTTGTATAGAAGAATAAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 TCAAGAAGTTTGTATAGAAGAATCAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300 Query 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACG-TCGATGCAGAGAC 359 |||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| Sbjct 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACGCT-GATGCGGAGAC 359 Query 360 TCTAGAGTTAATTGGGAAAGAACACGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 360 TCTAGAGTTGATTGGGAAAGAACATGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419 Query 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGTAGGTTGTCTTGGAAGCTCATTAGCCAT 479 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGCAGGTTGTCTTGGAAGCTCTTTAGCCAT 479 Query 480 CATGAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATTA 539 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 480 CATGAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCAATGTGGTTTTCGGATTA 539 Query 540 CATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAACG 599 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 540 CATTTTCTTGGAAAGAAGTTGGGCCAAAGATGAGAATACCCTCAAGGCAGGTTTTAAACG 599 Query 600 ACTTGAAGACTTTCCAATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCAC 659 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ACTTGAGGACTTTCCTATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCAC 659 Query 660 TCAGGAGAAGCTTGAAGCTGCTCAAGAGTACGCCTCTATCAGAAGCTTACCGTCTCCTCG 719 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 660 TCAAGAGAAGCTTGAAGCTGCTCAAGATTACGCCTCTATCAGAAGCTTACCGTCTCCTCG 719 Query 720 AAATGTTTTGATTCCTCGTACAAAGGGATTTGTTTCGGCAGTGTCTGAAATACGGTCATT 779 ||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||| Sbjct 720 AAATGTTCTGATTCCTCGTACAAAGGGTTTTGTTTCGGCGGTGTCTCAAATACGGTCATT 779 Query 780 TGTTCCTGCAATATATGACTGTACCTTAACCGTTCATAACAATCAGCCTACACCAACTCT 839 |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 780 TGTTCCTGCAATTTATGACTGTACCTTAACTGTTCATAACAATCACCCTACACCAACTCT 839 Query 840 GCTTAGGATGTTCAGTGGACAATCATCTGAGATAAATTTGCAGATGAGACGTCACAAAAT 899 ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| Sbjct 840 GCTTAGGATGTTCAGTGGACAATCATCTGAGGTGAATTTGCTGATGAGACGTCACAAAAT 899 Query 900 GAGTGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCAC 959 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 900 GAGTGAGTTGCCAGAAACCGATGATGGTATTGCACAATGGTGCCAAGATCTCTTTATCAC 959 Query 960 CAAGGATGCTCAACTTGAGAAATACTTCACAAAAGACGTTTTCAGCGACTTGGAAGTTCA 1019 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 960 GAAGGATGCTCAACTTGAGAAATATTTTACAAAAGACGTTTTCAGCGACTTGGAAGTTCA 1019 Query 1020 CCAAATTAACCGGCCAATCAAGCCATTAATCGTGGTCATCATTTGGTTAGGT-TTCCTTG 1078 |||||| |||||||||||||| ||||| ||||||||||||||||||||| || ||| | Sbjct 1020 CCAAATCAACCGGCCAATCAAACCATTGATCGTGGTCATCATTTGGTTATGTCTTC-TAA 1078 Query 1079 TATTCGGTGGTTTCAAGCTACTGCAATGGCTTTCAATAGTGGCCTCGTGGAAGATCATTC 1138 |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 1079 TATTCGGTGGTTTCAAGCTACTCCAATGGCTCTCCATAGTGGCCTCGTGGAAGATCATTC 1138 Query 1139 TTTTGTTTGTGTTCTTCTTGGTCATTGCAACTATAACAATGCAAATACTAATTCAATCGT 1198 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1139 TTTTGTTTGTGTTCTTCTTGGTGATTGCAACTATAACAATGCAAGTACTAATTCAATCGT 1198 Query 1199 CTGAGTCACAACGTTCAACTCCAGCCAAGAGACCTCTACAAGAACAGCTTATTTCTGCTT 1258 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1199 CTGAGTCACAACGTTCCACTCCTGCCAAGAGACCTCTACAAGAACAGCTTATTTCTGCCT 1258 Query 1259 AGGACAAAAGAAAACTCTATTTAAGCCACATATTTTACACTGCATTGTTCCTTCACTCAA 1318 || |||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||| Sbjct 1259 AGTACAAAAGAAACCTCTGTTTTAGCCACATATTTTACATTGCATTGTTCCTTCACTCAA 1318 Query 1319 --ATGTAAACATAATTGTTTTTGTTAGT 1344 || ||||||||||||||||||||||| Sbjct 1319 CCATTTAAACATAATTGTTTTTGTTAGT 1346 > Ahg923607 jgi|Araly1|923607|scaffold_104888.1 Length=1558 Score = 1738 bits (941), Expect = 0.0 Identities = 1076/1140 (94%), Gaps = 14/1140 (1%) Strand=Plus/Plus Query 122 TCTCAGACATGA-AGATCCCTGCGGCTCTTGTCTTTATCCCTGTTGGTGTCCTCTTCTTG 180 ||||| |||||| | |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 16 TCTCATACATGACA-ATCCCTGCTGCTCTTGTCTTTATCCCTGTTGGCATCCTCTTCTTG 74 Query 181 ATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 240 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 75 GTCTCAGGGCTCATCGTCAACAGCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTC 134 Query 241 TCAAGAAGTTTGTATAGAAGAATAAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 135 TCAAGAAGTTTGTATAGAAGAATCAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTC 194 Query 301 ATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACGTC-GATGCAGAGAC 359 |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 195 ATATGGTTGTCTGATTGGTGGGCTTGTATAAAGATCAATTTATACG-CTGATGCAGAGAC 253 Query 360 TCTAGAGTTAATTGGGAAAGAACACGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 419 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 254 TCTAGAGTTAATTGGGAAAGAACATGCACTTGTCTTAAGCAATCATCGAAGTGACATTGA 313 Query 420 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGTAGGTTGTCTTGGAAGCTCATTAGCCAT 479 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 314 TTGGCTTATTGGATGGGTCATGGCTCAGCGTGCAGGTTGTCTTGGAAGCTCTTTAGCCAT 373 Query 480 CAT-GAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATT 538 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 CATGGCA-AAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATT 432 Query 539 ACATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAAC 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 433 ACATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAAC 492 Query 599 GACTTGAAGACTTTCCAATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCA 658 ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 493 GACTTGAGGACTTTCCTATGACATTTTGGCTAGCTCTTTTCGTTGAAGGAACTCGTTTCA 552 Query 659 CTCAGGAGAAGCTTGAAGCTGCTCAAGAGTACGCCTCTATCAGAAGCTTACCGTCTCCTC 718 |||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||| Sbjct 553 CTCAAGAGAAGCTTGAAGCTGCTCAAGATTACGCCTCTATCAGAAGCTTACCATCACCTC 612 Query 719 GAAATGTTTTGATTCCTCGTACAAAGGGATTTGTTTCGGCAGTGTCTGAAATACGGTCAT 778 |||||||| |||||||||||||||||||||||||||| || || ||| |||||||||||| Sbjct 613 GAAATGTTCTGATTCCTCGTACAAAGGGATTTGTTTCAGCGGTATCTCAAATACGGTCAT 672 Query 779 TTGTTCCTGCAATATATGACTGTACCTTAACCGTTCATAACAATCAGCCTACACCAACTC 838 ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 673 TTGTTCCTGCAATTTATGACTGCACCTTTACCGTTCATAACAATCAGCCTACACCAACTC 732 Query 839 TGCTTAGGATGTTCAGTGGACAATCATCTGAGATAAATTTGCAGATGAGACGTCACAAAA 898 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 733 TGCTTAGGATGTTCAGTCGACAATCATCTGAGGTAAATTTGCAGATGAGACGTCACAAAA 792 Query 899 TGAGTGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCA 958 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 793 TGAGCGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCA 852 Query 959 CCAAGGATGCTCAACTTGAGAAATACTTCACAAAAGACGT-TTTCAGCGACTTGGAAGTT 1017 ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||| Sbjct 853 CCAAGGATGCTCAACTTGAGAAATACTTCACAAAAAACGTATTT-AGCGACTTGGACGTT 911 Query 1018 CACCAAATTAACCGGCCAATCAAGCCATTAATCGTGGTCATCATTTGGTTAG-GT-TTCC 1075 |||||||| |||||||||||||| ||||| |||||||||||||||||||| | || ||| Sbjct 912 CACCAAATCAACCGGCCAATCAAACCATTGATCGTGGTCATCATTTGGTT-GTGTCTTC- 969 Query 1076 TTGTATTCGGTGGTTTCAAGCTACTGCAATGGCTTTCAATAGTGGCCTCGTGGAAGATCA 1135 || ||| ||||||||| |||||| | ||||||||||| ||||||||||||||||||||| Sbjct 970 TTATATACGGTGGTTTTAAGCTATTCCAATGGCTTTCCTTAGTGGCCTCGTGGAAGATCA 1029 Query 1136 TTCTTTTGTTTGTGTTCTTCTTGGTCATTGCAACTATAACAATGCAAATACTAATTCAAT 1195 ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 1030 TTCTTTTGTTTGTGTTCTTCTTGGTGATTGCAACTATAACAATGCAAGTACTTGTTCAAA 1089 Query 1196 CGTCTGAGTCACAACGTT-CAACTCCAGCCAAGAGACCTCTACAAGAACAGCTTATTTCT 1254 |||||||||||||||||| || |||| |||||||||||| || ||||||||||||||||| Sbjct 1090 CGTCTGAGTCACAACGTTTCA-CTCCTGCCAAGAGACCTTTAGAAGAACAGCTTATTTCT 1148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50284127523 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5