BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51310.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474241 jgi|Araly1|474241|fgenesh2_kg.1__4195__AT1G51310.1 2468 0.0
Ahg923607 jgi|Araly1|923607|scaffold_104888.1 110 5e-23
> Ahg474241 jgi|Araly1|474241|fgenesh2_kg.1__4195__AT1G51310.1
Length=1580
Score = 2468 bits (1336), Expect = 0.0
Identities = 1500/1577 (95%), Gaps = 19/1577 (1%)
Strand=Plus/Plus
Query 4 GCAAAACAGTGCAGATAAGATAAACCCTCCGGT-TTTACCCGAAGGTTCAATCGCCGGCG 62
||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 1 GCAAAACAGAGCAGATAAGATAAACCCTCC-TTCTTTAACCGAAGGTTCAATCGCCGGCG 59
Query 63 AATTCCGATGTTCTCCGCCGTCGCCAAACCCTTCCTCTCTCCCTCACCACCGCTATTTCG 122
| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 60 AGTTCCGATGTTCTCCGCCGTCGCCAAACCCTTCCTCTCTCCCTCACCGCCACTCTTTCG 119
Query 123 ccttcctctttcctctatctcaatttccttccgcgttttcccctca---ttct--t-ct- 175
|||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 120 CCTTCCTCTTTCTTCTATCTCAATTTCCTTCCGCGTTTTCCCCTCATTCTTCTCCTCCTC 179
Query 176 -cc-tcctcctcttcctctc-AATTGCCGTCTCCACAATCTTCTAACCCAATCACGCCTC 232
|| |||||||||||||||| || |||||||| ||||||||| | ||||| |||||||
Sbjct 180 CCCATCCTCCTCTTCCTCTCTCCTT-CCGTCTCCTCAATCTTCTGATCCAATTACGCCTC 238
Query 233 TCATATCCTCGAACCGTAACTATAGCCGCCATGCCTTTATCGTCGACCAATACCTCTCAT 292
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TCATATCCTCGGACCGTAACTATAGTCGCCATGCCTTTATCGTCGACCAATACCTCTCAT 298
Query 293 GTTCCATGCCTGAGAAGCCTCTTCGTGTCGCCGTACTCCTCAGTGGCGGCGTCGATAGCA 352
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 GTTCCATGCCTGAGAAGCCTCTTCGTGTCGCCGTTCTCCTCAGTGGCGGCGTCGATAGCA 358
Query 353 GTGTCGCTCTCCGTCTCCTCCACGCCGCTGGTCACTCATGTACCGCTTTCTATCTCAAAA 412
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 359 GTGTCGCTCTCCGTCTCCTCCACGCCGCTGGTCACTCCTGTACAGCTTTCTATCTCAAAA 418
Query 413 TCTGGTTTCAGGAAGGCTTTGAGAATTTCTGGAATCAGTGCCCTTGGGAAGATGATTTGA 472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 TCTGGTTTCAGGAAGGCTTTGAGAATTTCTGGAATCAGTGTCCTTGGGAAGATGATTTGA 478
Query 473 AATATGCAAAACATGTTTGTGAGCAGGTTGATGTTCCTTTGGAGGTTGTGCATTTAACAG 532
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGTATGCTAAGCATGTTTGTGAGCAGGTTGATGTTCCTTTGGAGGTTGTGCATTTAACAG 538
Query 533 ATGAATATTGGGAAAGAGTTGTTTCCTACATTATTGAGGAGTATCGATGTGGACGTACAC 592
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 ATGAATATTGGGAAAGAGTTGTTTCCTACATTATTGAGGAGTATCGGTGTGGACGTACAC 598
Query 593 CTAATCCGGATGTTCTATGTAATACTAGAATTAAGTTTGGTGCATTCATGGATGCAATCA 652
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 CTAATCCGGATGTTCTATGTAATACTAGAATTAAGTTCGGTGCATTCATGGATGCAATCA 658
Query 653 GTGATATGGAGTATGACTATGTAGGTTCAGGTCATTATGCTAAAGTGGTCCATCCTCCTG 712
||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 659 GTGATATGGAGTATGACTACGTAGCTTCAGGTCATTATGCTAAAGTGGTTCATCCTCCTG 718
Query 713 CTGACCAAAATGATGCATCATCTGTTTTGGAACTATCACAAGACATGGTGAAGGATCAGA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTGACCAAAATGATGCATCATCTGTTTTGGAACTATCACAAGACATGGTGAAGGATCAGA 778
Query 773 CCTACTTCCTCTCACATCTCTCTCAAACCCAGCTTAAGCGACTGCTTTTCCCACTTGGTT 832
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 CCTACTTCCTCTCACATCTCTCTCAAACCCAGCTTAAGCGACTGATTTTCCCACTTGGTT 838
Query 833 GTGTAAAAAAGGACGAAGTTCGCAAACTAGCCACACAATTCGATTTGCCAAATAAAGATA 892
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 GTGTAAAAAAGGACGAAGTTCGCAAACTAGCCACACAATTCGATTTGCCAAACAAAGATA 898
Query 893 GAAAGGATTCGCAAGGAATTTGTTTCCTTGGGAAGATAAAGTTCAGCGACTTTGTCTGTA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAAGGATTCGCAAGGAATTTGTTTCCTTGGGAAGATAAAGTTCAGCGACTTTGTCTGTA 958
Query 953 GACACATAGGGGAGATGGAAGGAATTATATTGGAAGCCGAATCTGGGGATTTTCTTGGTA 1012
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 CACACATAGGGGAGATGGAAGGAATTATATTGGAAGCCGAAACTGGGGATTTTCTTGGTA 1018
Query 1013 ACCACCGGGGATTTTGGTTTTACACAATTGGACAACGCCAAGGCTTGCGTTTACCCGGTG 1072
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 ACCACCGGGGATTTTGGTTTTACACAATTGGACAACGCCAAGGATTGCGTTTACCCGGTG 1078
Query 1073 GCCCCTGGTATGTTGTTGAAAAGGACACCAAGAACAATGTAGTGTTTGTCTCCAGAAATT 1132
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 GGCCCTGGTATGTTGTTGAAAAGGACACCAAGAACAACGTAGTGTTTGTCTCCAGAAATT 1138
Query 1133 ATTACTCAATCGACAAGAGAAGGCGGATTTTCCGTGTCGGCTCCTTAAGATGGAATAGTG 1192
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1139 ACTACTCAATCGACAAGAGAAGGCGGATTTTCCGTGTTGGCTCCTTAAGATGGCTTAGTG 1198
Query 1193 GGAAACCTTCAGGCAAAGTTAGAGAGCTCCGTTGCAAGGTCCGACATGGGCCTGGCTTCT 1252
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1199 GGAAACCTTCAGGCTATGTTAGAGAGCTCCGTTGCAAGGTCCGACATGGGCCTAGCTTCT 1258
Query 1253 ACAGCTGCAGTTTTGAAATGGAAGGAGACGGAGATGTTGCAGTTGTGCACCTAGACGAAG 1312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1259 ACAGCTGCAGTTTTGAAATGGAAGCAGACGGAGATGTTGCAGTTGTGCACCTAGACGAAG 1318
Query 1313 ACGATCAAGGTCTAGCTGCTGGACAGTTTGCAGCGTTTTACGAGGGAACCACTTGCATTG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACGATCAAGGTCTAGCTGCTGGACAGTTTGCAGCGTTTTACGAGGGAACCACTTGCATTG 1378
Query 1373 GTTCAGGCGTAATTCTGGAGTCATGGGATGATCAGTGTTTCCCGGTCTGTGCAAAAGCCC 1432
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1379 GTTCAGGCGTAATTCTGGAGTCATGGGACGATCAGTGTTTCCCAGTCTGTGCAAAAGCCC 1438
Query 1433 TTCAACTCGCAGC-ATTGGAAGATAAAACCAAACTCGGGAAACCTGTCAAAATCATGACA 1491
||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1439 TTCAACTTGCAGCGAT-GGAAGATAAAACCAAACTCGGGAAACCTGTCAAAATCAAGACA 1497
Query 1492 ATGCCTACT-ATGTCATCTGTTGAGGCTGATACAGGAGAAGCCAGTGCAGA-GCAAAAAC 1549
||||| ||| | || |||||| ||||||||| |||||||| |||||| ||| | |||| |
Sbjct 1498 ATGCC-ACTTACGTTATCTGTCGAGGCTGATTCAGGAGAATCCAGTGAAGAAG-AAAAGC 1555
Query 1550 TAGTCAACGCATAAGAG 1566
| || || |||| ||||
Sbjct 1556 TGGTTAATGCATGAGAG 1572
> Ahg923607 jgi|Araly1|923607|scaffold_104888.1
Length=1558
Score = 110 bits (59), Expect = 5e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 1231 GTCCGACATGGGCCTGGCTTCTACAGCTGCAGTTTTGAAATGGAAGGAGACGGAGATGTT 1290
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1284 GTCCGACATGGGCCTAGCTTCTACAGCTGCAGTTTTGAAATGGAAGCAGACGGAGATGTT 1343
Query 1291 GCAGTTG-TGCA 1301
|||||| ||||
Sbjct 1344 CCAGTTGCTGCA 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5