BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51320.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914263 jgi|Araly1|914263|Al_scaffold_0001_4517 1153 0.0
> Ahg914263 jgi|Araly1|914263|Al_scaffold_0001_4517
Length=783
Score = 1153 bits (624), Expect = 0.0
Identities = 721/766 (94%), Gaps = 14/766 (2%)
Strand=Plus/Plus
Query 370 AGATTTTTCCCATCCATACATCGTTATCCAGTCACATATGACATAGGTTATGATAACAAA 429
||||| || |||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 25 AGATTATTGGCATCCAAAAATCGTTATCCAATCACATATGACATAGGTTATGATAACAAA 84
Query 430 AAACAATACAAGATGCTCG-ATTATTATAAATGTGAAGGTGACTCATCAATAAAATCCAT 488
||||||||||||||| | | |||||||||||| |||||||||| |||||| ||||||||
Sbjct 85 AAACAATACAAGATG-TTGAATTATTATAAATATGAAGGTGACCCATCAACAAAATCCAG 143
Query 489 AATTTATGAGATTGGGTTATATTCAAAGAAAGTT-AAAG-ATTTGGAGTCTGATAGTACT 546
||||||||||||||||||||| |||||||| || |||| |||||| || ||||||||||
Sbjct 144 GATTTATGAGATTGGGTTATATGCAAAGAAA-TTCAAAGAATTTGG-GTGTGATAGTACT 201
Query 547 TGGTCAATTTTCCAATCAAATAGCGTATCTCTGAATGGAACTTTGTATTGGGCTGGTGTA 606
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 202 TGGTCAATTTTCCAATCAAATTGCGTATCTCTGAATGGAACTTTGTATTGGGCTGGTGTA 261
Query 607 GATGTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAAAAACCAA-GAAC 665
||| ||||||||||||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 262 GATTTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAAAGACAAACG-AC 320
Query 666 TTTTTGTAGTCTACCGTTTATGTACGATGACGACAATGTTCTAGCCCTTGCGGTTTTTAG 725
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTTTTGTCGTCTACCGTTTAAGTACGATGACGACAATGTTCTAGCCCTTGCGGTTTTTAG 380
Query 726 GAAAGATCGTCTTTCATTGTTAAACTTATGCAATAAAACATCAGA-GATAAAGATTTGGT 784
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 381 GAAAGATCATCTTTCATTGTTAAACTTATGCAATAAAACATCA-ACGATAAAGATTTGGT 439
Query 785 TGACAAAGAATAATATCAATGATAGGGAGGTAGGATTAGAAGAGGACGTGGTGTGGATAA 844
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 440 TGACAAAGAATAAAATCAATAATAGGGAGGTAGGATTAGAAGAGGACGTGGTGTGGATAA 499
Query 845 ACCTCATGACAGTGTTAATACCTAATTTCCCTAAATTTTCATTTTATTGGTATAACCGTC 904
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AACTCATGACAGTGTTAATACCTAATTTCCCTAAATTTTCATTTTATTGGTATAACCGTC 559
Query 905 CTGACCTAACTTACTTCCTCGACAACGATGATGCTAAGAGGCTTGTCATTTGTTGTTATG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CTGACCTAACTTACTTCCTCGACAACGATGATGCTAAGAGGCTTGTCATTTGTTGTTATG 619
Query 965 ATGAAACTGATCAGGCTTACATCTACATTGTAAAAGGAGATATGTTC-AAGAAAATCAAA 1023
|||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 620 ATGAAACTAATCAGGCTTACATCTACATTGTAAAAGGAGATACGTTCGAA-AAAATCAAA 678
Query 1024 ATAGATCAGTATGAGGTTCTATCTGATTATTCTCGCCCGCA-CTTCCATACTTATATCCC 1082
||||||||||||||||||||||||||| | |||| |||||| || |||||| ||||||||
Sbjct 679 ATAGATCAGTATGAGGTTCTATCTGATCAATCTCACCCGCATCT-CCATACATATATCCC 737
Query 1083 CAGTTTGGTTCGGCCTTCCCGGGTCAAAGAGGACAACAAGAATTAA 1128
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 738 CAGTTTGGTTCGGCCTTCCCCGGTCAAAGAGGACAACAAGAATTAA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5