BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51355.1

Length=750
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474246 jgi|Araly1|474246|fgenesh2_kg.1__4200__AT1G51355.1         806    0.0  
  Ahg479617 jgi|Araly1|479617|fgenesh2_kg.3__2318__AT3G20900.1        89.8    3e-17


> Ahg474246 jgi|Araly1|474246|fgenesh2_kg.1__4200__AT1G51355.1
Length=707

 Score =  806 bits (436),  Expect = 0.0
 Identities = 523/562 (93%), Gaps = 17/562 (3%)
 Strand=Plus/Plus

Query  1    TATAGATTCACATTCACCCAtttctc-ttcttttttgctctctctctcccttctcttctc  59
            |||||||||||||||||||||||| | || |||||| || |  ||||| | |||| ||||
Sbjct  1    TATAGATTCACATTCACCCATTTC-CATT-TTTTTT-CT-T-GCTCTCTC-TCTC-TCTC  53

Query  60   tctta-ttctggtctcaaaaatggcatcaaaaggaaagaaaccactaagaagaacaacta  118
            ||||| || ||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct  54   TCTTATTTTTGGTCTCAAAAATGGCATCAAAAGGAAAGAAACCAATAAAAAAAACAACTA  113

Query  119  caagaagaagaaaaagaagccacttcaagaacCCATCTCCTCCATGTAGTATCAATAGTG  178
            |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct  114  CAAGAAGAAGAAAAAGAAGCCATTTCAAGAACCCATCTCCTCCATGTAGTACCAATAGTG  173

Query  179  ACGTCACTTCAACGTCATCAACATCTACTTCACCCACATCAACGGCCACGCCATCTCCGG  238
            ||||||||||||||||||||||||||||||| |||||||||| || |||||||||| || 
Sbjct  174  ACGTCACTTCAACGTCATCAACATCTACTTCTCCCACATCAATGGTCACGCCATCTTCGA  233

Query  239  TTTCAGCAGAGAGTGGATGTTGTACTCCG------GAGAAGTCACGAATACCGGAGATGC  292
            || ||| ||||||||||||||||||||||      |||||||||||||||||||||||||
Sbjct  234  TTCCAGTAGAGAGTGGATGTTGTACTCCGAAATCTGAGAAGTCACGAATACCGGAGATGC  293

Query  293  TGACGTGTCCACCGGCACCGAAGAAGCAAAAGGTGGCGCAAAACTGCGCTTTAAGGAGGA  352
            |||||||||| ||||| |||||||||||||||||||||||||||||  |||| |||||||
Sbjct  294  TGACGTGTCCGCCGGCGCCGAAGAAGCAAAAGGTGGCGCAAAACTGTTCTTTGAGGAGGA  353

Query  353  GACAAATCGCTTTCTTTGCTCCTCCGGATGTAGAGCTCTTCTTCGTTTTCGCACTTGGTC  412
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  354  GACAAATCGCTTTCTTTGCTCCTCCGGATGTAGAACTCTTCTTCGTTTTCGCACTTGGTC  413

Query  413  AACAAAAT-AATAAATAAGTTAAGTTTATAATTAGGGTTTTGTGATTATTATCATGGTAT  471
            ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  414  AAC-AAATCAATAAATAAGTTAAGTTTATAATTAGGGTTTTGTGATTACTATCATGGTAT  472

Query  472  CAATATCTAGTTTCTAGTTTGATTCAAATACAATAATATTTAAAGTATATTATAGAGAGT  531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  CAATATCTAGTTTCTAGTTTGATTCAAATACAATAATATTTAAAGTATATTATAGAGAGT  532

Query  532  GTAGTGTGAGGTTTTGcttctt  553
            ||||||||||||||||||||||
Sbjct  533  GTAGTGTGAGGTTTTGCTTCTT  554


> Ahg479617 jgi|Araly1|479617|fgenesh2_kg.3__2318__AT3G20900.1
Length=273

 Score = 89.8 bits (48),  Expect = 3e-17
 Identities = 92/111 (83%), Gaps = 12/111 (11%)
 Strand=Plus/Minus

Query  269  AGAAGTC-ACGAATACCGGAGATGCTGACGTGTCCACCGGCACCGAAGAAGCAAAAGGTG  327
            ||||||| | | ||||||||||||||||||||||||||||| ||||||||||||| ||| 
Sbjct  187  AGAAGTCTA-GGATACCGGAGATGCTGACGTGTCCACCGGCGCCGAAGAAGCAAAGGGT-  130

Query  328  GCGCAAA-A-CTGCGCT-TTAAGGA-GGAGACAA-ATCGCTTTCTTTGCTC  373
             | |||| | ||| | | ||| | | ||||| || |||| |||||||||||
Sbjct  129  -CACAAAGAACTGTG-TGTTACG-ACGGAGA-AAGATCGTTTTCTTTGCTC  83



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27639114825


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5