BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51360.1
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923618 jgi|Araly1|923618|scaffold_104899.1 865 0.0
Ahg482092 jgi|Araly1|482092|fgenesh2_kg.4__1152__AT2G31670.1 363 1e-99
> Ahg923618 jgi|Araly1|923618|scaffold_104899.1
Length=805
Score = 865 bits (468), Expect = 0.0
Identities = 584/638 (92%), Gaps = 15/638 (2%)
Strand=Plus/Plus
Query 3 TCTCTTCTCCGTCGTCGTAACCATGTCTTCAATCGTCGAGCACGTCGTTCTATTCAAGCT 62
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTC-TCTCCGTCGTCGTTACCATGTCTTCAATCGTCGAGCACGTCGTTCTATTCAAGCT 59
Query 63 CAACGACGACGACGTTGACTCCGGCAAGATCAACTCCATGGTCAACGGAATCAACGAACT 122
| | |||| ||||||||| |||||| |||||||||||||||||| ||||| ||||
Sbjct 60 ---C-A--ACGATGTTGACTCCAACAAGATAAACTCCATGGTCAACGGACTCAACAAACT 113
Query 123 AGTCAATCTCGACCAAGTGCTTCACCTCTAC-TGCGGTTCAATCCACCGCCTTATCACGA 181
||||||||| |||| || |||||||||| | |||||||| ||||||||||||| | | |
Sbjct 114 CGTCAATCTCAACCAGGTTCTTCACCTCT-CTTGCGGTTCTATCCACCGCCTTAGCTCCA 172
Query 182 CCACCGCCTCCGACTTCACTCACGTCCTTCATAGCCGTTACAGATCCAAAGAAGATCTCA 241
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 173 CCACCGCCTCCGACTTCACTCACGTCCTTCATAGCCGTTACAGATCCAAGGAAGATCTCA 232
Query 242 ACGCTTACGCTATACATCCCGATCACGTTCGTGTTGTCAAGGAATCAGAATCGATTCGCG 301
|| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 233 ACTCTTACGCAATCCATCCCGATCACGTTCGTGTTGTCAAGGAATCTGAATCGATTCGCG 292
Query 302 AAGATATCATGGCCGTTGATTGGATCGCCGAACAAGCTCC-GGAAGCCCTAGCACCGCCT 360
||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||
Sbjct 293 AAGATATCATGGCCGTTGATTGGATCGCCGATCAAGTTCCCGGAA-CCCTAGCACCGCCT 351
Query 361 CTTGGTTCAATTGGTAAAATCACGCTTCTTAAATTGAAAGAGAATGTCATG-GAAGAAGC 419
| ||||||| ||||||||||||||||||| || ||||||||||||||| | || ||| |
Sbjct 352 CCTGGTTCAGTTGGTAAAATCACGCTTCTCAAGTTGAAAGAGAATGTC-TCCGATGAACC 410
Query 420 GAAATTGGAGATTATGGAAGTGATGAAGGAGAAATTTGAAGGAAT-TGATCAGATTACTG 478
||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||| |
Sbjct 411 AAAATTGGAGATTATGGAAGTGATTAAGGAGAAATTTCAAGGA-TGTGATCAGATTACCG 469
Query 479 TTGGAGAAAACTTTTCTCCGGGGAGATCTAAAGATTTCTCTATTGGATCGATTTCGTATT 538
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 470 TTGGAGAAAACTTTTCTCCGGGGAGAGCTAAAGGTTTCTCTATTGGATCGGTTTCGTATT 529
Query 539 TTAGGGATTTGGGTGAAATTGAGGCTGTGGATGATCAGATGAAGTTGCAGAATGATAAGA 598
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 530 TTAGGGATTTGGGTGAAATTGAAGCTGTGGATGATCAGATGAAGTTGCAGAAGGATAAGA 589
Query 599 TTCGTGATTATGTTGATGATACCATTGTTGTTGAGTTC 636
||||||||||| ||||||||||||||||||||||||||
Sbjct 590 TTCGTGATTATATTGATGATACCATTGTTGTTGAGTTC 627
> Ahg482092 jgi|Araly1|482092|fgenesh2_kg.4__1152__AT2G31670.1
Length=957
Score = 363 bits (196), Expect = 1e-99
Identities = 492/628 (78%), Gaps = 47/628 (7%)
Strand=Plus/Plus
Query 70 GACGACGTTGACTCCGGCAAGATCAAC-TCCATGGTCAACGGAA--TCAACGAACTAGTC 126
||||||| ||||||| ||| ||| || |||||| ||||| || |||||| || | |
Sbjct 184 GACGACGCTGACTCCAACAAAATC-ACTTCCATGATCAAC--AACCTCAACGCTCTTGCC 240
Query 127 AATCTCGACCAAGTGCTTCACCTCTACTGCGGTTCAATCCACCGCCTTATCACGA-CCAC 185
|||||| |||||||||||| ||| | || | | ||||||| | | | || || |
Sbjct 241 TCTCTCGATCAAGTGCTTCACATCTCCACCGCTCCTCTCCACCGTC-T-T--GGATCCTC 296
Query 186 CGCC-TCCGA-CTTCACTCACGTCCTTCATAGCCGTTACAGATCCAAAGAAGATCTCAAC 243
|||| | | | ||||||||||||||| |||||||||||| |||| ||||||||||| |
Sbjct 297 CGCCGT-C-ACCTTCACTCACGTCCTCCATAGCCGTTACGGATCTAAAGAAGATCTTGCC 354
Query 244 GCTTACGCTATACATCCCGATCACGTTCGTGTTGTCAAGGAATC--AG-AATCGATTC-G 299
| |||| | |||||| ||||||||||||||||| |||||||| | | || || |
Sbjct 355 TCCTACGGTGCACATCCAGATCACGTTCGTGTTGTTAAGGAATCTGTGTTACCG-GTCTG 413
Query 300 CGAAGATATCATGGCCGTTGATTGGATCGCCGAACAAG-CTCCGGAAGCCCTAGCACCGC 358
||| || |||||||| ||||||||||||||||| | || | |||||| ||||||| ||||
Sbjct 414 CGACGACATCATGGCTGTTGATTGGATCGCCGATCGAGTCCCCGGAA-CCCTAGCGCCGC 472
Query 359 CTCTTGGTTCAATTG-GTAAAATCACGCTTCTTAAATTGAAAGAGAATGTCAT-GGAAGA 416
||| |||||| ||| | ||| ||||||| |||||||||||||||||| || | || ||
Sbjct 473 CTCCTGGTTCGGTTGCG-AAACTCACGCTACTTAAATTGAAAGAGAATCTC-TCCGATGA 530
Query 417 AGCGAAATTGGAGATTATGGAAGTGA-T----G---AAG-GAGAAATTTGAAGGAATTGA 467
||||||| |||||||| || ||||| | | ||| ||||||||| |||||||||
Sbjct 531 GGCGAAATCGGAGATTACGGGAGTGATTAAGGGACTAAGTGAGAAATTTCCAGGAATTGA 590
Query 468 TCAGATTACTGTTGGAGAAAACTTTTCTCCGGGGAGATCTAAAGATTTCTCTATTGGATC 527
|||||||||||||||||||||||||||||| | ||| |||||| |||| |||||| ||
Sbjct 591 TCAGATTACTGTTGGAGAAAACTTTTCTCCAGCTAGAGCTAAAGGTTTCACTATTGCTTC 650
Query 528 GATTTCGTATTTTAGGGATTTGGGTGAAATTGAGGCTGTGGATGATCAGATGAAGTTGCA 587
|||| |||| || | | ||||| ||||||| || |||||||||| ||||| | |||||
Sbjct 651 GATTGCGTACTTCAAGAATTTGAGTGAAATGGAAGCTGTGGATGCTCAGAAGGAGTTGGT 710
Query 588 GAAT--G-ATAAG-AT----T-CGTGATTATGTTGATGATACCATTGTTGTTGAGTTCAA 638
|||| | | ||| || | ||||||||||| ||| |||||||||||||||||||
Sbjct 711 GAATTCGCAAAAGGATAAGGTTCGTGATTATGTGGATTCTACCATTGTTGTTGAGTTCG- 769
Query 639 TG-TGCCGTCTTCTTCATAAGTCTTCTA 665
|| ||||||||| |||| | ||||||||
Sbjct 770 TGGTGCCGTCTTTTTCACA-GTCTTCTA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5