BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51370.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917013 jgi|Araly1|917013|Al_scaffold_0008_1764 401 7e-111
Ahg949967 jgi|Araly1|949967|scaffold_801854.1 296 3e-79
Ahg887400 jgi|Araly1|887400|Al_scaffold_0211_1 279 3e-74
Ahg923618 jgi|Araly1|923618|scaffold_104899.1 224 2e-57
> Ahg917013 jgi|Araly1|917013|Al_scaffold_0008_1764
Length=699
Score = 401 bits (217), Expect = 7e-111
Identities = 432/532 (81%), Gaps = 30/532 (6%)
Strand=Plus/Plus
Query 345 GGATTCATGGATACGCAAACTCCGTTTAGATT-TGGGTTATCATCATGATA-AGTATGAT 402
||| |||||||||||||||||||| ||| ||| | ||| || ||||| || | | ||||
Sbjct 9 GGAGTCATGGATACGCAAACTCCGGTTAAATTAT-TGTTCTCCTCATGGTAGACT-TGAT 66
Query 403 CTCAT-GTCATGGATTGATGCTGCGACTACGCGTAGGATTCAGCATCTTGATGTTCATTG 461
||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 67 CTC-TCGTCATGGATTGATGCTGTGACTACGCGTAGGATTCAGCATCTTGATGTTCGTTT 125
Query 462 TTTTCACGATAATAAGATACCCTTGAGCATATATACATG-CACGACGTTGGTACACTTAC 520
|||| || |||| |||||||| ||| ||||||| || | ||| ||||||||||||
Sbjct 126 TTTTTGCGGTAATGAGATACCCCCGAGTTTATATACCTGTGA-GACACTGGTACACTTAC 184
Query 521 GACTCCGTTG-GGCT-GTCTTGACTAATCCCGAGTTTGTTTCCTTACCTTGTCTGAAGAT 578
||||| | || || | |||| |||| | || ||||||||||| ||||||||||||||
Sbjct 185 GACTCTG-TGAGG-TCACCTTGTGTAATGCTGACTTTGTTTCCTTGCCTTGTCTGAAGAT 242
Query 579 CATGCATTTTGAAAATGTTAGCTATCCCAATGAGACCACGTTGCAGAAACTTATCTCAGG 638
||||||| | | || || |||||||||||||| |||||||||||||||||||||||
Sbjct 243 CATGCATCTACAGCATAATAAATATCCCAATGAGACTACGTTGCAGAAACTTATCTCAGG 302
Query 639 CTCTCCAGTTCTAGAAGAATTAAT-ACTCTTCAGCA-CT---A-TG-T-ATCCTAAGG-G 689
|||||||||||| ||||| |||| | ||| ||| | || | || | || ||||| |
Sbjct 303 CTCTCCAGTTCTGGAAGATTTAACCA-TCTACAG-ATCTTGGAATGGTGATGATAAGGCG 360
Query 690 AAACGTTTTACAATTGCGCTCTGATACGCTAAAGAGACTCGATATCAATGAGTTTATTGA 749
|| ||||||| | |||||||| |||||||||||||| || |||| |||||| | |
Sbjct 361 AAT-GTTTTACTAGTGCGCTCTCATACGCTAAAGAGAGTCTATATAAATGAGGGCACCCA 419
Query 750 CGTTGTGATTTATGCACCTCTACTCCAGTGTCTGAGGGCTAAGATGTACTCAACAAAGAA 809
||||||||| |||||||||||||||||||| |||| |||| | | | ||||||||||||
Sbjct 420 AGTTGTGATTGATGCACCTCTACTCCAGTGTTTGAGCGCTACGGTTTCCTCAACAAAGAA 479
Query 810 CTTTCAGATCATCA--GTTCGGGTTTCC-CTGCCAAACTAGATATTGATTTC 858
|||||||||||||| ||| || || || |||||||||||||||||| ||||
Sbjct 480 CTTTCAGATCATCAATGTT-GG-TT-CCTCTGCCAAACTAGATATTGGTTTC 528
> Ahg949967 jgi|Araly1|949967|scaffold_801854.1
Length=460
Score = 296 bits (160), Expect = 3e-79
Identities = 327/404 (81%), Gaps = 25/404 (6%)
Strand=Plus/Plus
Query 569 GTCTGAAGATCATGCATTTTGAAAATGTTAGC-TATCCCAATGAGACCACGTTGCAGAAA 627
||||||||||||||||||| |||||||||| | | |||||||||||| ||||||||||||
Sbjct 14 GTCTGAAGATCATGCATTTAGAAAATGTTA-CTTCTCCCAATGAGACTACGTTGCAGAAA 72
Query 628 CTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAATACTCT-TCAGCACTAT--GTATCCT 684
||||||||||||||||||||||| ||||| |||| ||| | | || | | | |||||
Sbjct 73 CTTATCTCAGGCTCTCCAGTTCTGGAAGATTTAAAACT-TATAAG-A-TGTTCGTATCAG 129
Query 685 AAGGGAAACGTTTTACAA-TTGCGCTCTGATACGCTAAAGAGACTCGATATCAATGAGTT 743
|||| || | |||| || |||||| |||||||||||||| |||| || |||||
Sbjct 130 AAGGCAA---T---ACAAGTT-CGCTCTCATACGCTAAAGAGAATCGACATTGATGAGAG 182
Query 744 TATTGACGTTGTGATTTATGCACCTCTACTCCAGTGTCTGAGGGCTAAGATGTACTCAAC 803
| | | ||||||||| |||||||| |||||||||||||| | || |||||| || |||
Sbjct 183 AACTAAAGTTGTGATTGATGCACCTTTACTCCAGTGTCTGTTGACTGAGATGTTCTTAAC 242
Query 804 AAAGAACTTTCAGATCATCAGTTCGGGTTTCCCTGCCAAACTAGATATTGATTT-CG-TC 861
||| |||| ||||||| ||| ||| ||||||||||||||||||||||||||| | || ||
Sbjct 243 AAAAAACTATCAGATCGTCAATTCAGGTTTCCCTGCCAAACTAGATATTGATATGCGATC 302
Query 862 AAT--AC-TGGTGGGAGATACCaaaaaaaaaaaGTGATT-GAAGATATCCTCATCGATAT 917
||| || | | | ||| || || |||||| | |||||||||| ||||||
Sbjct 303 AATGCACCTC-TACCCCAGACCCAATGAAGGC-GTGATTCGG-GATATCCTCACCGATAT 359
Query 918 TTCGAGGGTCAGGGATCTAGTTATTAGTAGTAATACTTGGAAGG 961
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 TTCGAGGGTCAGGGATCTAGTTATTAGTAGGAATACTTGGAAGG 403
> Ahg887400 jgi|Araly1|887400|Al_scaffold_0211_1
Length=822
Score = 279 bits (151), Expect = 3e-74
Identities = 501/663 (76%), Gaps = 51/663 (8%)
Strand=Plus/Plus
Query 328 ttttttGATTCCCACAGGGATTCATGGATACGCAAACTCCGTTTAGAT-TTGGGTTA-TC 385
||||||||||| ||| ||| |||||||||||||||||||| ||||| || | | ||
Sbjct 52 TTTTTTGATTCAAACAAGGAGTCATGGATACGCAAACTCCGGATAGATATT-CCTAATTC 110
Query 386 --ATCATGA-TAAGTATGATCTCATGTC-ATGGATTGATGCTGCGACTACGCGTAGGATT 441
|||| | |||| | || || | |||||||||||||| || ||| |||||||||
Sbjct 111 TTCTCAT-AGCAAGTCTTTTCCCA-CCCGATGGATTGATGCTGTGAGTACACGTAGGATT 168
Query 442 CAGCATCTTGATGTTCA--TTG--TTTTCACGATAATAAG-AT-A-C--CCTTGAGCATA 492
| ||||| |||||||| ||| |||| || | ||| || | | || ||| |||
Sbjct 169 GAACATCTCGATGTTCATTTTGCCTTTTGTCGGCCAGAAGAATCACCATCCCTGAATATA 228
Query 493 TAT-ACATG-CACGACGTTGGTACACTTACGACTCCGTTGGGCT-GTCTTGACTAATCCC 549
||| | || || ||| ||||||| |||| ||||| ||| | | |||| ||| | ||
Sbjct 229 TATGTC-TGCCA-GACACTGGTACAGTTACAACTCC-AAGGGGTCGCCTTGGCTAGTGCC 285
Query 550 GAGTTTGTTTCCTTACCTTGTCTGAAGATCATGCATTTTGAAAATGTTAGCTATCCCAAT 609
||||||||| ||||||| | || |||||||||||||| ||| || ||||||||||||||
Sbjct 286 GAGTTTGTTACCTTACCAAGCCTTAAGATCATGCATTTAGAATATATTAGCTATCCCAAT 345
Query 610 GAGACCACGTTGCAGAAACTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAA-TACTC-T 667
||| |||| ||| ||||||||||||| |||||||||||| | ||||| |||| || ||
Sbjct 346 GAGTCCACTTTGGAGAAACTTATCTCTGGCTCTCCAGTTTTGGAAGAGTTAACTATTCGC 405
Query 668 TCA-GCACTATGTATCCTAAGGGAAACGTTTTACAATTGCGCTCTGATACGCTAAAGAG- 725
|| | | | | | ||||| ||| ||||||||| |||||||| |||||||||||||
Sbjct 406 ACATGTTTTTTTTTTTATAAGGAAAAGGTTTTACAAGTGCGCTCTCATACGCTAAAGAGA 465
Query 726 ACTCGATATCAATGAGT---TTATTGACGTTGTGATTTATGCACCTCTACTCCAGTGTCT 782
| || | || ||||||| || | |||||||| |||||||||||||||||||| |
Sbjct 466 ATTC-ACATAAATGAGTCCAGTACCCAATTTGTGATTGATGCACCTCTACTCCAGTGTTT 524
Query 783 GAGGGCTAAGATGTA-CTCAACAAAGAACTTTCAGATCATCAGTTCGGGTTTCCCTGCCA 841
|| |||| || | || || |||||||| ||||||||||||| |||| ||| |||| ||
Sbjct 525 GAAGGCTGAGGT-TATCTTTACAAAGAAATTTCAGATCATCAACTCGGCTTTTCCTGGCA 583
Query 842 AACTAGATATTGATTTCGTCAATACTGGTGGGAGATACCaaaaaaaaaaaGTGA-TTGAA 900
||||||||||||| || | |||| || || | | | ||| |||
Sbjct 584 GACTAGATATTGATATCAACTCTACTAGT--GA-A-AGC-----------TTGATTTG-C 627
Query 901 GATATCCTCATCGATATTTCGAGGGTCAGGGATCTAGTTATTAGTAGTAATACTTGGAAG 960
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 628 GATATCCTCACCGATATTTCGAGGGTCAGGGATCTAGTTATTAATAGGCGTACTTGGAAG 687
Query 961 GAA 963
|||
Sbjct 688 GAA 690
> Ahg923618 jgi|Araly1|923618|scaffold_104899.1
Length=805
Score = 224 bits (121), Expect = 2e-57
Identities = 152/167 (91%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 723 GAGACTCGATATCAATGAGTTTATTGACGTTGTGATTTATGCACCTCTACTCCAGTGTCT 782
|||| || || |||||||||||||||| ||||||||| |||||||||| ||||||||| |
Sbjct 630 GAGAATCAATGTCAATGAGTTTATTGATGTTGTGATTGATGCACCTCTGCTCCAGTGTGT 689
Query 783 GAGGGCTAAGATGTACTCAACAAAGAACTTTCAGATCATCAGTTCGGGTTTCCCTGCCAA 842
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 690 GAGGGCTAAGATGTACTCAACAAAGAACTTTCAGATCATCAATTCGGGTTTCCCTGCCAA 749
Query 843 ACTAGATATTGATTTCGTCAATACTGGTG-G-GAGATACCaaaaaaa 887
|||||||||||||||| || |||| ||| | ||||||||| |||||
Sbjct 750 ACTAGATATTGATTTCCTCTCTACTAGTGTGTGAGATACCATAAAAA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5