BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51380.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474250 jgi|Araly1|474250|fgenesh2_kg.1__4204__AT1G51380.1 1951 0.0
> Ahg474250 jgi|Araly1|474250|fgenesh2_kg.1__4204__AT1G51380.1
Length=1256
Score = 1951 bits (1056), Expect = 0.0
Identities = 1158/1208 (96%), Gaps = 4/1208 (0%)
Strand=Plus/Plus
Query 77 TTATGGAAGGAACTTTAGATGAAGAGAATCTAGTCTTCGAAACCACCAAAGGTATCAAAC 136
||||||||||| ||||||||| |||||| | || ||||||||||||||||| |||||||
Sbjct 1 TTATGGAAGGAGTTTTAGATGACGAGAATTTGGTATTCGAAACCACCAAAGGGATCAAAC 60
Query 137 CAATCAAGAGTTTCGATGACATGGGGATGAATGATAAAGTTCTTCGCGGCGTTTATGACT 196
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CAATTAAGAGTTTCGATGACATGGGCATGAATGATAAAGTTCTTCGCGGCGTTTATGACT 120
Query 197 ACGGTTACAAGAAACCATCTGAGATTCAGCAGAGAGCTTTGGTTCCGATTCTCAAAGGAC 256
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 121 ACGGTTACAAGAAACCATCTGAGATTCAGCAGAGAGCCTTGGTGCCGATTCTAAAAGGAC 180
Query 257 GAGACGTCATAGCTCAGGCTCAGTCCGGTACTGGTAAAACCTCTATGATTGCTATCTCCG 316
|||| || ||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 181 GAGATGTTATAGCTCAGGCTCAGTCTGGTACTGGTAAAACCTCCATGATTGCAATCTCCG 240
Query 317 TTTGCCAAATCGTCAACA-TATCCTCCAGAAAGGTTCAAGTCTTGGTGTTGTCTCCATCA 375
| || ||||||| ||||| | || |||||||||||||||| ||||||||||||||||||
Sbjct 241 TCTGTCAAATCGCCAACACT-TCTTCCAGAAAGGTTCAAGCCTTGGTGTTGTCTCCATCG 299
Query 376 AGAGAGCTGGCTTCACAAACAGAGAAGACTATACAGGCTATTGGGGCACATACCAATATT 435
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 AGAGAGCTGGCTTCACAAACAGAGAAGACTATACAGGTTATTGGGGCACATACCAATATT 359
Query 436 CAGGCGCATGCTTGCATTGGTGGTAAGAGCATCGGTGAAGATATCAAGAAGCTAGAGCGT 495
||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 360 CAGGCGCATGCCTGCATTGGTGGTAAGAGCATTGGAGAAGATATCAAGAAGCTGGAGCGT 419
Query 496 GGTGTCCACGCTGTGTCTGGGACACCTGGTCGAGTTTACGATATGATAAAGAGAGGAAGC 555
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGTCCATGCTGTGTCTGGGACACCTGGTCGAGTTTACGATATGATAAAGAGAGGAAG- 478
Query 556 T-TACAAACTAAAGCTGTTAAACTTTTGGTTCTGGATGAATCAGATGAAATGCTGAGTAA 614
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCTACAGACTAAAGCTGTTAAACTTTTGGTTCTGGATGAATCAGATGAAATGCTGAGTAA 538
Query 615 AGGTTTGAAAGACCAGATTTATGACGTTTACAGAGCTCTTCCACACGATATTCAGGTTTG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGGTTTGAAAGACCAGATTTATGACGTTTACAGAGCTCTTCCACACGATATTCAGGTTTG 598
Query 675 CTTGATTTCTGCTACTCTTCCTCAAGAGATTTTGGAGATGACAGAAAAGTTTATGACAGA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTTGATTTCTGCTACTCTTCCTCAAGAGATTTTGGAGATGACAGAAAAGTTTATGACAGA 658
Query 735 TCCTGTGAGGATTCTTGTGAAGCCTGATGAATTGACTCTTGAAGGAATCAAACAATACTA 794
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 TCCTGTGAGGATTCTTGTGAAGCCTGATGAATTGACTCTTGAAGGAATTAAACAATACTA 718
Query 795 TGTTGATGTTGATAAAGAAGAGTGGAAATTCGATACTCTTTGCGATCTTTATGGAAGACT 854
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 719 TGTTGATGTTGATAAAGAAGAGTGGAAATTTGATACTCTTTGCGATCTTTATGGAAGGCT 778
Query 855 TACTATTAACCAAGCTATTATCTTCTGCAACACAAGACAAAAGGTTGATTGGCTTACTGA 914
|| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 779 TATTATTAATCAAGCTATTATCTTCTGCAACACAAGACAAAAGGTGGATTGGCTTACTGA 838
Query 915 GAAGATGAGGAGTAGCAATTTCATAGTCTCATCAATGCATGGAGACAAACGTCAAAAGGA 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 AAAGATGAGGAGTAGCAATTTCATAGTCTCATCAATGCATGGAGACAAACGTCAAAAAGA 898
Query 975 GAGAGATGATATCATGAACCAGTTTCGGTCATTTAAAAGCCGTGTTTTAATCGCCTCAGA 1034
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAGAGATGAAATCATGAACCAGTTTCGGTCATTTAAAAGCCGTGTTTTAATCGCCTCAGA 958
Query 1035 TGTATGGGCACGAGGGATCGACGTTCAAACTGTTTCTCATGTCATCAATTATGATATACC 1094
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 TGTATGGGCACGAGGGATCGACGTTCAAACTGTTTCTCATGTCATTAATTATGATATACC 1018
Query 1095 CAACAACCCGGAGCTATACATTCATCGTATAGGACGAGCTGGTCGTTTTGGTCGTGAAGG 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAACAACCCGGAGCTATACATTCATCGTATAGGACGAGCTGGTCGTTTTGGTCGTGAAGG 1078
Query 1155 TGTTGCCATTAACTTTGTAAAATCTTCGGATATGAAAGATCTTAAGGATATTGAGCGACA 1214
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1079 TGTTGCCATTAACTTTGTAAAATCTTCAGACATGAAGGATCTTAAGGATATTGAGCGACA 1138
Query 1215 TTACGGTACTAAAATCCGCGAGATGCCAGCTGATCTTGTCTAAAGATGTTGTTTCCTTGA 1274
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1139 TTACGGTACCAAAATCCGCGAGATGCCAGCTGATCTTGTCTAGAGATTTTGTTTCCTTGA 1198
Query 1275 AGCTGAAG 1282
||||||||
Sbjct 1199 AGCTGAAG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5