BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51405.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314503 jgi|Araly1|314503|fgenesh1_pm.C_scaffold_1003283 2089 0.0
Ahg946817 jgi|Araly1|946817|scaffold_703046.1 246 3e-64
> Ahg314503 jgi|Araly1|314503|fgenesh1_pm.C_scaffold_1003283
Length=2391
Score = 2089 bits (1131), Expect = 0.0
Identities = 1361/1464 (93%), Gaps = 47/1464 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAGACGTAACGAAGCGTTGATGATTAGGAAATCGAAGTGGCAGTACCCACAAGTG 60
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 ATGGAGAGAAGTAACGAAGCGTTGATGATGAGGAAATCGAAGTGGCAGTACCCAC-A--- 56
Query 61 GGTTCTCCGACGCCGAGGATTCTTCAGTTGCCACGGAGGCATAGTGTTCGACGAAATGCT 120
||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 57 --------GACGCCGAGGATTCTTCAGTTGCCACGTAGGCATAGTGTTCGACGGAATGCT 108
Query 121 TCAAAGGGCTTGAAGACAACAG-TTTCTTCGTCGTCTCAGAAGGATCGGAGAGTGAAACT 179
||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 109 GCAAAGGGTTTGAAGACAAC-GCTTTCTTCGTCGTCTCAGAAGGATCGGAGAGTGAAACT 167
Query 180 GGAGGTTTTGTTTCATCAAGAGAGGACTTTTGATCGGGGGGCATCGATTGTGATGGTGAA 239
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 168 GGAGGTTCTGTTTCATCAAGAGAGGACTTTTGATCGAGGGGCATCGATTGTGAT-G-G-- 223
Query 240 TGATAATGGTGGTgagaagaaggatgaagaagagggaaggagaagagggaaagttgcaga 299
|| || |||| | | | |||| | | ||||||||||||||||||||||||||
Sbjct 224 TG--AA------TGAG--G-A-G--GAAG-A-A-GGAAGGAGAAGAGGGAAAGTTGCAGA 266
Query 300 tgggagagagaTTGGTGTGTCTGGGTTGT-CTTCTTCTTCTGCGGTTGATGAAGTTGAGG 358
||||||||||| | || | |||||| | | ||||||||||||| ||||||||||||||
Sbjct 267 TGGGAGAGAGA-T--TG-G--TGGGTT-TCCATCTTCTTCTGCGGCTGATGAAGTTGAGG 319
Query 359 AAGCTAAGTGGAGGTTTCAAGCGGAGATGTTGAGATCAGAGTGTAATTTGTTAAGAATAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AAGCTAAGTGGAGGTTTCAAGCGGAGATGTTGAGATCAGAGTGTAATTTGTTAAGAATAG 379
Query 419 AAAAAGAGATTGCTTTGAAGAAGATGGAGAGGAGGAAGAAGCGAATGGAGCGGACGCTGA 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 380 AAAAAGAGATTGCTTTGAAGAAGATGGAGAGGAGGAAGAAGCGAATGGAGAGGACGCTGA 439
Query 479 GATCTGCTGTTCTTACTCTTCTATCTGGGAAAGAGAGAATCTCTGAAGGGACGAAAGAGA 538
|||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 440 GATCTGCTGTTCTTACTCTTCTCTCTGGGAAACAGAGAATCTCTGAAGGGAAGAAAGAGA 499
Query 539 GCAAGGTTTTGGAAGATGAGATAAGCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GCAAGGTTTTGGAAGATGAGATAAGCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTC 559
Query 599 CAAAGGTTAAGGACATGGAAGCTAGAAACTTCAAACATAATTTTGATAAGCAAGCTTCTG 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 560 CAAAGGTTAAGGACATGGAAGCTAGAAACTTCAGACATAATTTTGATAAGCAAGCTTCTG 619
Query 659 TTTTAAGAAGAGAGCTAGAGAGGTTCGATGAAGCAGTTTCCGAAGAGGTTTGTGTCAAAG 718
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 620 TTTTAAGAAGAGAGCTGGAGAGGTTTGATGAGGCAGTTTCCGAAGAGGTTTGTGTCAAAG 679
Query 719 GGATTCAGAAAATGGCAGAGGCTAGCTTCTCCGTCCATTCTGATCAAAACGCTCTTAGGA 778
||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||| |
Sbjct 680 GGATTCAGAAAATGGCAGAAGCTAGCTTCTCTGTCCATTCTGATCAAAGCATTCTTAGAA 739
Query 779 ACAATAATGGAAATATAGATACATTGAGTAGTAAAATGGAGGCGTTGTCAAAAGGGGTTT 838
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 740 ACAATAATGGAAATATAGATACATTGAGTAGTAAAATGGAGGCGTTATCGAAAGGGGTTT 799
Query 839 TGTTGGAAAGAATGGAGAAAGAATATGGATCGAGTCTCGTTGCACCGTCTTCAAGCTCTG 898
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 800 TGTTGGAAAGAATGGAGAAGGAATATGGATCGACTCTCGTTGCACCGTCTTCAAGCTCTG 859
Query 899 TACAAGACATGTATTGTAAGGGAATTAAAGCGCATGAGGAAAAGAAAGACTGTTCTAGAC 958
|||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 860 TACAAGACATGTATAGTAAGGCAATTAAAGCGCACGAGGAAAAGAAAGACTGTTCTAGAC 919
Query 959 ACTGCAAAGTAGTTATGAGGAAGATTGCGGATGAAGTAAGAGCTGAAGCAGAGCAATGGT 1018
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 920 ACTGCAAAGCAGTTATGAGGAAGATCGCGGATGAAGTAAGAGCTGAAGCAGAGCAATGGT 979
Query 1019 CACAAATGCAAGAGATGTTGAATCAAGTGAGAAAAGAAATGGAGGAACTTCAATCTTGTC 1078
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 980 CACAAATGCAAGAGATGTTGAATCAAGTGAGAAAAGAAATGGAAGAGCTTCAATCATGTC 1039
Query 1079 GTGATTTCTGGCAAAACCGCGCCCTCGAAG-CAGATTCCGAGATACAAAATCTACATTCC 1137
|||||||||||||||||||||| || || | ||||| | |||||||||||||||||||||
Sbjct 1040 GTGATTTCTGGCAAAACCGCGCTCTTGA-GTCAGATGCTGAGATACAAAATCTACATTCC 1098
Query 1138 TCTGTTGAAGGATGGCGAAGAAAGGCGTTATCATCAGAGGCAAAGTTGAAAAACCTACAA 1197
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1099 TCGGTTGAAGGATGGCGAAGAAAGGCGTTATCATCAGAAGCAAAGTTAAAAAACCTACAA 1158
Query 1198 GCAGAGGTTTGCGGATTACAAGAAGAGATCAAGAG-ACTGAGAAAGGAAGATAAGTTAGA 1256
| ||||||||||| |||||||||||||||||| || | |||| |||||||||||||||||
Sbjct 1159 GAAGAGGTTTGCGAATTACAAGAAGAGATCAAAAGTA-TGAGGAAGGAAGATAAGTTAGA 1217
Query 1257 ACCAGAGAAGAACAAATTGCCATCAGAGTCAGAGAAAAGGGTATTGATTTGTCGGTTAAA 1316
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ACTAGAGAAGAACAAATTGCCATCAGAGTCAGAGAAAAGGGTATTGATTTGTCGGTTAAA 1277
Query 1317 AGAAAACCGACATAGCAACAATGGAGATTGGTCCAAGTACAGTGAAGGAAGAACAACAAA 1376
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1278 AGAAAACCGACATAGCAACAATGGAGATTGGTCTAAGTACAAAGAAGGAAGAACAACAAA 1337
Query 1377 ACCGTCGAGCTCGAGACCGCCTTTGAGGGAAGTTAAGAACAGTTCAGTCATAGCAAGGCA 1436
|||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 1338 ACCGTCGAGCTCGAGACCGCCTATGAGGGAAGTTAAGAACAGTTCAGCCACAGCAAGGCA 1397
Query 1437 GAGAAACTCCAATATCATGAAAAT 1460
||||||||||||| |||| |||||
Sbjct 1398 GAGAAACTCCAATGTCATCAAAAT 1421
> Ahg946817 jgi|Araly1|946817|scaffold_703046.1
Length=336
Score = 246 bits (133), Expect = 3e-64
Identities = 144/149 (97%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 504 TGGG-AAAGAGAGAATCTCTGAAGGGACGAAAGAGAGCAAGGTTTTGGAAGATGAGATAA 562
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 24 TGGGAAAACAGAGAATCTCTGAAGGGAAGAAAGAGAGCAAGGTTTTGGAAGATGAGATAA 83
Query 563 GCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTCCAAAGGTTAAGGACATGGAAGCTA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTCCAAAGGTTAAGGACATGGAAGCTA 143
Query 623 GAAACTTCAAACATAATTTTGATAAGCAA 651
||||||||| ||||||| |||||||||||
Sbjct 144 GAAACTTCAGACATAATATTGATAAGCAA 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5