BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51405.1 Length=1464 Score E Sequences producing significant alignments: (Bits) Value Ahg314503 jgi|Araly1|314503|fgenesh1_pm.C_scaffold_1003283 2089 0.0 Ahg946817 jgi|Araly1|946817|scaffold_703046.1 246 3e-64 > Ahg314503 jgi|Araly1|314503|fgenesh1_pm.C_scaffold_1003283 Length=2391 Score = 2089 bits (1131), Expect = 0.0 Identities = 1361/1464 (93%), Gaps = 47/1464 (3%) Strand=Plus/Plus Query 1 ATGGAGAGACGTAACGAAGCGTTGATGATTAGGAAATCGAAGTGGCAGTACCCACAAGTG 60 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 1 ATGGAGAGAAGTAACGAAGCGTTGATGATGAGGAAATCGAAGTGGCAGTACCCAC-A--- 56 Query 61 GGTTCTCCGACGCCGAGGATTCTTCAGTTGCCACGGAGGCATAGTGTTCGACGAAATGCT 120 ||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 57 --------GACGCCGAGGATTCTTCAGTTGCCACGTAGGCATAGTGTTCGACGGAATGCT 108 Query 121 TCAAAGGGCTTGAAGACAACAG-TTTCTTCGTCGTCTCAGAAGGATCGGAGAGTGAAACT 179 ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 109 GCAAAGGGTTTGAAGACAAC-GCTTTCTTCGTCGTCTCAGAAGGATCGGAGAGTGAAACT 167 Query 180 GGAGGTTTTGTTTCATCAAGAGAGGACTTTTGATCGGGGGGCATCGATTGTGATGGTGAA 239 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | | Sbjct 168 GGAGGTTCTGTTTCATCAAGAGAGGACTTTTGATCGAGGGGCATCGATTGTGAT-G-G-- 223 Query 240 TGATAATGGTGGTgagaagaaggatgaagaagagggaaggagaagagggaaagttgcaga 299 || || |||| | | | |||| | | |||||||||||||||||||||||||| Sbjct 224 TG--AA------TGAG--G-A-G--GAAG-A-A-GGAAGGAGAAGAGGGAAAGTTGCAGA 266 Query 300 tgggagagagaTTGGTGTGTCTGGGTTGT-CTTCTTCTTCTGCGGTTGATGAAGTTGAGG 358 ||||||||||| | || | |||||| | | ||||||||||||| |||||||||||||| Sbjct 267 TGGGAGAGAGA-T--TG-G--TGGGTT-TCCATCTTCTTCTGCGGCTGATGAAGTTGAGG 319 Query 359 AAGCTAAGTGGAGGTTTCAAGCGGAGATGTTGAGATCAGAGTGTAATTTGTTAAGAATAG 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 AAGCTAAGTGGAGGTTTCAAGCGGAGATGTTGAGATCAGAGTGTAATTTGTTAAGAATAG 379 Query 419 AAAAAGAGATTGCTTTGAAGAAGATGGAGAGGAGGAAGAAGCGAATGGAGCGGACGCTGA 478 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 380 AAAAAGAGATTGCTTTGAAGAAGATGGAGAGGAGGAAGAAGCGAATGGAGAGGACGCTGA 439 Query 479 GATCTGCTGTTCTTACTCTTCTATCTGGGAAAGAGAGAATCTCTGAAGGGACGAAAGAGA 538 |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| Sbjct 440 GATCTGCTGTTCTTACTCTTCTCTCTGGGAAACAGAGAATCTCTGAAGGGAAGAAAGAGA 499 Query 539 GCAAGGTTTTGGAAGATGAGATAAGCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTC 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 GCAAGGTTTTGGAAGATGAGATAAGCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTC 559 Query 599 CAAAGGTTAAGGACATGGAAGCTAGAAACTTCAAACATAATTTTGATAAGCAAGCTTCTG 658 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 560 CAAAGGTTAAGGACATGGAAGCTAGAAACTTCAGACATAATTTTGATAAGCAAGCTTCTG 619 Query 659 TTTTAAGAAGAGAGCTAGAGAGGTTCGATGAAGCAGTTTCCGAAGAGGTTTGTGTCAAAG 718 |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 620 TTTTAAGAAGAGAGCTGGAGAGGTTTGATGAGGCAGTTTCCGAAGAGGTTTGTGTCAAAG 679 Query 719 GGATTCAGAAAATGGCAGAGGCTAGCTTCTCCGTCCATTCTGATCAAAACGCTCTTAGGA 778 ||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||| | Sbjct 680 GGATTCAGAAAATGGCAGAAGCTAGCTTCTCTGTCCATTCTGATCAAAGCATTCTTAGAA 739 Query 779 ACAATAATGGAAATATAGATACATTGAGTAGTAAAATGGAGGCGTTGTCAAAAGGGGTTT 838 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 740 ACAATAATGGAAATATAGATACATTGAGTAGTAAAATGGAGGCGTTATCGAAAGGGGTTT 799 Query 839 TGTTGGAAAGAATGGAGAAAGAATATGGATCGAGTCTCGTTGCACCGTCTTCAAGCTCTG 898 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 800 TGTTGGAAAGAATGGAGAAGGAATATGGATCGACTCTCGTTGCACCGTCTTCAAGCTCTG 859 Query 899 TACAAGACATGTATTGTAAGGGAATTAAAGCGCATGAGGAAAAGAAAGACTGTTCTAGAC 958 |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 860 TACAAGACATGTATAGTAAGGCAATTAAAGCGCACGAGGAAAAGAAAGACTGTTCTAGAC 919 Query 959 ACTGCAAAGTAGTTATGAGGAAGATTGCGGATGAAGTAAGAGCTGAAGCAGAGCAATGGT 1018 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 920 ACTGCAAAGCAGTTATGAGGAAGATCGCGGATGAAGTAAGAGCTGAAGCAGAGCAATGGT 979 Query 1019 CACAAATGCAAGAGATGTTGAATCAAGTGAGAAAAGAAATGGAGGAACTTCAATCTTGTC 1078 ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| Sbjct 980 CACAAATGCAAGAGATGTTGAATCAAGTGAGAAAAGAAATGGAAGAGCTTCAATCATGTC 1039 Query 1079 GTGATTTCTGGCAAAACCGCGCCCTCGAAG-CAGATTCCGAGATACAAAATCTACATTCC 1137 |||||||||||||||||||||| || || | ||||| | ||||||||||||||||||||| Sbjct 1040 GTGATTTCTGGCAAAACCGCGCTCTTGA-GTCAGATGCTGAGATACAAAATCTACATTCC 1098 Query 1138 TCTGTTGAAGGATGGCGAAGAAAGGCGTTATCATCAGAGGCAAAGTTGAAAAACCTACAA 1197 || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1099 TCGGTTGAAGGATGGCGAAGAAAGGCGTTATCATCAGAAGCAAAGTTAAAAAACCTACAA 1158 Query 1198 GCAGAGGTTTGCGGATTACAAGAAGAGATCAAGAG-ACTGAGAAAGGAAGATAAGTTAGA 1256 | ||||||||||| |||||||||||||||||| || | |||| ||||||||||||||||| Sbjct 1159 GAAGAGGTTTGCGAATTACAAGAAGAGATCAAAAGTA-TGAGGAAGGAAGATAAGTTAGA 1217 Query 1257 ACCAGAGAAGAACAAATTGCCATCAGAGTCAGAGAAAAGGGTATTGATTTGTCGGTTAAA 1316 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1218 ACTAGAGAAGAACAAATTGCCATCAGAGTCAGAGAAAAGGGTATTGATTTGTCGGTTAAA 1277 Query 1317 AGAAAACCGACATAGCAACAATGGAGATTGGTCCAAGTACAGTGAAGGAAGAACAACAAA 1376 ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1278 AGAAAACCGACATAGCAACAATGGAGATTGGTCTAAGTACAAAGAAGGAAGAACAACAAA 1337 Query 1377 ACCGTCGAGCTCGAGACCGCCTTTGAGGGAAGTTAAGAACAGTTCAGTCATAGCAAGGCA 1436 |||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| Sbjct 1338 ACCGTCGAGCTCGAGACCGCCTATGAGGGAAGTTAAGAACAGTTCAGCCACAGCAAGGCA 1397 Query 1437 GAGAAACTCCAATATCATGAAAAT 1460 ||||||||||||| |||| ||||| Sbjct 1398 GAGAAACTCCAATGTCATCAAAAT 1421 > Ahg946817 jgi|Araly1|946817|scaffold_703046.1 Length=336 Score = 246 bits (133), Expect = 3e-64 Identities = 144/149 (97%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 504 TGGG-AAAGAGAGAATCTCTGAAGGGACGAAAGAGAGCAAGGTTTTGGAAGATGAGATAA 562 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 24 TGGGAAAACAGAGAATCTCTGAAGGGAAGAAAGAGAGCAAGGTTTTGGAAGATGAGATAA 83 Query 563 GCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTCCAAAGGTTAAGGACATGGAAGCTA 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 GCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTCCAAAGGTTAAGGACATGGAAGCTA 143 Query 623 GAAACTTCAAACATAATTTTGATAAGCAA 651 ||||||||| ||||||| ||||||||||| Sbjct 144 GAAACTTCAGACATAATATTGATAAGCAA 172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54773772310 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5