BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51420.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914277 jgi|Araly1|914277|Al_scaffold_0001_4531 1958 0.0
Ahg934210 jgi|Araly1|934210|scaffold_402198.1 1267 0.0
> Ahg914277 jgi|Araly1|914277|Al_scaffold_0001_4531
Length=1275
Score = 1958 bits (1060), Expect = 0.0
Identities = 1207/1278 (94%), Gaps = 9/1278 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCGGTTAACATCTCCTCCTCGTCTAATGATAGTCTCCGATCTTGACGAAACCATG 60
||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 1 ATGGAGCGGCTAACATCTTCTCCTCGTCTAATGATAGTCTCAGATCTTGACGAAACAATG 60
Query 61 GTTGATCATCATAAAGATCCTGAGAATCTAGCTCTATTGAGGTTTAATTCATTGTGGGAA 120
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GTTGATCATCATAAAGATCCAGAGAATCTATCTCTATTGAGGTTTAATTCATTGTGGGAA 120
Query 121 GACGCTTATCGACACGACTCTCTTCTTGTTTTCTCAACAGGAAGAGCTCAAACAATGTAC 180
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 GACGCTTATCGACACGATTCTCTTCTTGTTTTCTCAACCGGAAGAGCACAAACAATGTAC 180
Query 181 AAGAAACTGAGAAAAGAGAAACCTTTGTTAACCCCTGATGTTATCATTACTTCTGTAGGA 240
|| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 AAAAAACTGAGAAAAGAGAAGCCTTTGTTAACCCCTGATGTTATTATTACATCTGTAGGA 240
Query 241 ACTGAGATAGCTTATGGTAACTCAATGGTTCCTGATGATAATTGGGTTGAAATCTTGAAT 300
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 241 ACTGAGATTGCTTATGGTAACTCCATGGTTCTTGATGATAATTGGGTTGAAATCTTGAAT 300
Query 301 AAGAAATGGGACCGAGGAATCGTCCAAGAAGAAACCAGCAAGTTCCCTGAGTTAACTCTT 360
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 AACAAATGGGACCGAGGAATCGTCGAAGAAGAAACCAGCAAGTTCCCTGAGTTAACTCTT 360
Query 361 CAGGGTGAAACAGAACAGAGGCCACACAAGCTTAGCTTTAATATTGACAAGAGTAAGGTT 420
||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 361 CAGGGTGAAACTGAACAGAGGCCACACAAGCTTAGTTTTAACATTGACAAAAGTAAGGTT 420
Query 421 AAGGCAGTGACGAAAGAGCTATCTCCGCGGTTAGAGAAACGTGGGGTTGATGTCAA-ATT 479
||||||||||| || |||||||||| |||||| |||||||| ||||| ||| |||| | |
Sbjct 421 AAGGCAGTGACTAAGGAGCTATCTCAGCGGTTGGAGAAACGCGGGGTGGATATCAAGA-T 479
Query 480 CATTTTCAGTGGAGGAAACGCTTTCGATGTTTTAGCAAAAGGTGGAGGAAAGGGACAAGC 539
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 AATTTTCAGTGGAGGAAACGCTTTCGATGTTTTACCAAAAGGTGGAGGAAAGGGACAAGC 539
Query 540 TCTTGCTTATCTGCTAAAGAAGCTCAAGACTGAAGGAAAGCTCCCTATCAACACTCTTGC 599
|||||||||||||||||||||||| |||||||||||||| | |||| | |||||||||||
Sbjct 540 TCTTGCTTATCTGCTAAAGAAGCTGAAGACTGAAGGAAAACACCCTGTTAACACTCTTGC 599
Query 600 TTGTGGGGACTCTGGAAATGATACTGAACTATTTACCATTCCCAATGTTTATGGTGTCAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGTGGGGACTCTGGAAATGATACTGAACTATTTACCATTCCCAATGTTTATGGTGTCAT 659
Query 660 GGTAAGCAATGCTCAAGAAGAGTTGTTGGAGTGGTATGCTGAAAATGCGAAAGACAATGC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 660 GGTAAGCAATGCTCAAGAAGAGTTGTTGGAGTGGTATGCTGAAAATGCGAAAGAGAATCC 719
Query 720 AAATATAATCCATGCGAGTGAGAGGTGTGCGGGTGGGATTACACAAGCCATTGGTCACTT 779
||| |||||||| || | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 AAACATAATCCACGCAAATGAGAGGTGTGCGGGTGGGATTATACAAGCCATTGGTCACTT 779
Query 780 TAAGCTTGGTCCAAATCTTTCTCCAAGAGATGTTTCTGACTTCTTGGAGTGCAAGGCGGA 839
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAAGCTCGGTCCAAACCTATCTCCAAGAGATGTTTCTGACTTCTTGGAGTGCAAGGCGGA 839
Query 840 TAATGTGAACCCGGGTCATGAGGTTGTGAAGTTTTTCTTGTTCTACGAGAGATGGAGACG 899
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 TAATGTGAACCCGGGTCATGAGGTTGTCAAGTTTTTCTTGTTCTACGAGAGATGGAGACG 899
Query 900 AGGTGAAGTTGAGAACTGT-ACGACATACACATCAAGTCTCAAAGCTTCATGTCATCCTT 958
||||||||||||||||||| | |||||||||| |||| |||||||||||||||||||||
Sbjct 900 AGGTGAAGTTGAGAACTGTGA-GACATACACAGCAAGCCTCAAAGCTTCATGTCATCCTG 958
Query 959 CTGGTGTCTTTGTTCATCCATCTGGTGCTGAAAAGTCTCTCAGAGACACCATTGATGAGC 1018
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 CTGGTGTCTTTGTTCATCCATCTGGTGGAGAAAAGTCTCTCAGAGACACCATTGATGAGC 1018
Query 1019 TTGGCAAGTACTATGGAGACAAAAAAGGGAAGAAGTTTCGTGTTTGGACTGATCAGGTCT 1078
|||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1019 TTGGAAAGTACTATGGAGACATGAAAGGGAAGAAGTTTCGGGTTTGGACAGATCAGGTCC 1078
Query 1079 TGGCAACAGACACAACTCCAGGGACTTGGATAGTAAAGCTTGATAAATGGGAGCAGACT- 1137
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 TGGCAACTGACACAACTCCAGGGACTTGGATAGTAAAGCTTGATAAATGGGAGCAGA-TA 1137
Query 1138 GGGGATGAGAGGAAATGTTGCACAACAACTGTCAAATTCACCTCAAAGGAAGGAGAAGGG 1197
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 GGGGATGAGAGGAAATGCTGCACAACAACGGTCAAATTCACCTCAAAGGAAGGAGAAGGG 1197
Query 1198 TTTGTGTGGGAACATGTGCAGCAAATATGGTCGGAGGAAACAGAGATTAAG--G-ATGAT 1254
||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1198 TTTGTGTGGGAACATGTGCAGCAAATATGGTCGGAGGAAACAGAGATAAAGAAGGATGAT 1257
Query 1255 AGCAACTGGATCATCTGA 1272
||||||||||||||||||
Sbjct 1258 AGCAACTGGATCATCTGA 1275
> Ahg934210 jgi|Araly1|934210|scaffold_402198.1
Length=1310
Score = 1267 bits (686), Expect = 0.0
Identities = 1095/1291 (85%), Gaps = 33/1291 (3%)
Strand=Plus/Plus
Query 1 ATGGAGCGGTTAACATCTCCTCCTCGTCTAATGATAGTCTCCGATCTTGA-CGAAACCAT 59
||||||||||||||||||||||||||||| ||||| ||||| |||||||| | | || ||
Sbjct 21 ATGGAGCGGTTAACATCTCCTCCTCGTCTGATGATTGTCTCGGATCTTGATC-ATACTAT 79
Query 60 GGTTGATCATCATAAAGATCCTGAGAATCTAGCTCTATTGAGGTTTAATTCATTGTGGGA 119
||||||||||||| |||||||||||||| |||| ||||| || ||||| ||||||||
Sbjct 80 GGTTGATCATCAT---GATCCTGAGAATCTCTCTCTGTTGAGATTCAATTCGTTGTGGGA 136
Query 120 AGACGCTTATCGACACGACTCTCTTCTTGTTTTCTCAACAGGAAGAGCTCAAACAATGTA 179
| |||||||||| || |||||||||||||| ||||| || |||||| | | |||| ||||
Sbjct 137 ACACGCTTATCGCCATGACTCTCTTCTTGTGTTCTCTACGGGAAGATCACCAACATTGTA 196
Query 180 -CAAGAAACTGAGAAAAGAGAAACCTTTG-TTAACCCCTGATGTTATCATTACT-TCTGT 236
||| || ||||||| |||||||||||| || ||||||||| ||| ||||| | |||||
Sbjct 197 TAAAG-AATTGAGAAAGGAGAAACCTTTGCTT-ACCCCTGATATTACCATTA-TGTCTGT 253
Query 237 AGGAACTGAGA-TAGCTTATGGTAACTCAATGGTTCCTGATGATAATTGGGTTGA-AATC 294
||||||||||| || |||||||||||| |||||||||||| || ||||||||| | |
Sbjct 254 AGGAACTGAGATTA-TTTATGGTAACTCTATGGTTCCTGATCATGGTTGGGTTGAGACT- 311
Query 295 TTGAATAAGAAATGGGA-CCGAGGAATCGTCCAAGAAGAAACCAGCAAGTTCCCTGAGTT 353
||||| || |||||||| | || || ||| |||||||| | |||||||||||||| ||
Sbjct 312 TTGAACAATAAATGGGATTTG-GGTATTGTCAAAGAAGAAGCTAGCAAGTTCCCTGAATT 370
Query 354 AACTCTTCAGGGTGAAACAGAACAGAGGCCACACAAGCTTAGCTTTAATATTGACAAGAG 413
|| ||||||| ||||| || ||||||||||| ||| |||||||| || ||||||||||
Sbjct 371 AAAGCTTCAGGCAGAAACTGAGCAGAGGCCACATAAGGTTAGCTTTTATGTTGACAAGAG 430
Query 414 TAAGGTTAAGGCAGTGACGAAAGAGCTATCTCCGCGGTTAGAGAAACGTGGGGTT-GATG 472
||||| ||| |||||| || |||||||| | |||||| ||||| | ||||| ||||
Sbjct 431 TAAGGCCCAGGAAGTGACTAAGGAGCTATCACAGCGGTTCCTGAAACAT-GGGTTGGATG 489
Query 473 TCAA-ATTCATTTTCAGTGGAGGAAACGCTTTCGATGTTTTAGCAAAAGGTGGAGGAAAG 531
|||| | | |||| ||||||||| | | ||| ||| ||||| || |||||| ||||||
Sbjct 490 TCAAGA-TAATTTACAGTGGAGGCATGGATTTGGATATTTTACCACAAGGTGCTGGAAAG 548
Query 532 GGACAAGCTCTTGCTTATCTGCTAAAGAAGCTCAAGACTGAA-GGAAAGCTCCCTATCAA 590
|||||||| ||||| |||||||| |||||||| ||||||||| ||||| |||||| ||||
Sbjct 549 GGACAAGCGCTTGCATATCTGCTGAAGAAGCTAAAGACTGAAGGGAAA-CTCCCTGTCAA 607
Query 591 CACTCTTGCTTGTGGGGACTCTGGAAATGATACTGAACTATTTACCATTCCCAATGTTTA 650
|||||||||||||| |||||||| || ||| ||||||| |||| |||||| |||||||
Sbjct 608 TACTCTTGCTTGTGGCGACTCTGGGAACGATGCTGAACTGTTTAGCATTCCGGATGTTTA 667
Query 651 TGGTGTCATGGTAAGCAATGCTCAAGAAGAGTTGTTGGAGTGGTATGCTGAAAATGCGAA 710
|||||||||||||||||||||||| |||||| ||||| ||||| ||||||| ||||| ||
Sbjct 668 TGGTGTCATGGTAAGCAATGCTCAGGAAGAGCTGTTGAAGTGGCATGCTGAGAATGCAAA 727
Query 711 AGACAATGCAAATATAATCCATGC-GAGTGAGAGGTGTGCGGGTGGGATTACACAAGCCA 769
|||||| | || |||||||||| || |||||||| ||||||||||||| ||||||||
Sbjct 728 AGACAACCCGAAGGTAATCCATGCAAAG-GAGAGGTGCGCGGGTGGGATTATACAAGCCA 786
Query 770 TTGGTCACTTTAAGCTTGGTCCAAATCTTTCTCCAAGAGATGTTTCTGACTTCTTGGAGT 829
|||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||
Sbjct 787 TTGGTCACTTCAAGCTTGGTCCAAACCTTTCTCCAAGAGATGTCTCTGACTTTTTAGAGT 846
Query 830 GCAAGGCGGATAATGTGAACCCGGGTCATGAGGTTGTGAAGTTTTTCTTGTTCTACGAGA 889
|||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 847 GCAAGGTGGAGAATGTGAACCCCGGTCACGAGGTTGTGAAGTTTTTCTTGTTCTACGAGA 906
Query 890 GATGGAGACGAGGTGAAGTTGAGAACTGT-ACGACATACACATCAAGTCTCAAAGCTTCA 948
|||||||||| || || |||||||||| | | | |||||||| |||| ||||||||||||
Sbjct 907 GATGGAGACGGGGCGAGGTTGAGAACTCTGAGG-CATACACAGCAAGCCTCAAAGCTTCA 965
Query 949 TGTCATCCTTCTGGTGTCTTTGTTCATCCATCTGGTGCTGAAAAGTCTCTCAGAGACACC 1008
| ||| || |||||| || || |||||||||||| ||||||| ||||| ||||| |||
Sbjct 966 TCTCACCCCGGTGGTGTGTTCGTCCATCCATCTGGTACTGAAAAATCTCTGAGAGATACC 1025
Query 1009 ATTGATGAGCTTG-GCAAGTACTATGGAGACAAAAAAGGGAAGAAGTTTCGTGTTTGGAC 1067
||||||||||| | |||||||| ||||||||||| |||||||||||||||| |||||| |
Sbjct 1026 ATTGATGAGCT-GCGCAAGTACCATGGAGACAAACAAGGGAAGAAGTTTCGGGTTTGGGC 1084
Query 1068 TGATCAGGTCTTGGCAACAGACACAACTCCAGGGACTTGGATAGTAAAGCTTGATAAATG 1127
||||| ||| ||||||||||||| || || ||||| |||||||||||||||||||||||
Sbjct 1085 AGATCAAGTCCTGGCAACAGACACTACCCCTGGGACATGGATAGTAAAGCTTGATAAATG 1144
Query 1128 GGAGCA-GACTGGGGATGAGAGGAA-ATGTTGCACAACAACTGTCAAATTCACCTCAAAG 1185
|||||| || |||||| || | | | ||| |||||||| ||||||||||||||| |||||
Sbjct 1145 GGAGCAAGA-TGGGGACGA-ACGCAGATGCTGCACAACGACTGTCAAATTCACCGCAAAG 1202
Query 1186 GAAGGAGAAGGGTTTGTGTGGGAACATGTGCAGCAAATATGGTCGGAGGAAACAGAGATT 1245
||||| ||||| || |||||||||||||| || |||| |||||||| ||| || || |
Sbjct 1203 GAAGGGGAAGGATTGGTGTGGGAACATGTACAACAAACCTGGTCGGAAGAATCAAAGGTG 1262
Query 1246 AAGGATGATAGCAACTGGATCATCTGAATCt 1276
||||||||||||| ||||||||||||| |||
Sbjct 1263 AAGGATGATAGCAGCTGGATCATCTGAGTCT 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5