BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G51450.1 Length=1858 Score E Sequences producing significant alignments: (Bits) Value Ahg923630 jgi|Araly1|923630|scaffold_104911.1 2176 0.0 > Ahg923630 jgi|Araly1|923630|scaffold_104911.1 Length=1552 Score = 2176 bits (1178), Expect = 0.0 Identities = 1450/1576 (92%), Gaps = 39/1576 (2%) Strand=Plus/Plus Query 13 aaaaaCTTCTGTTTCAATGGAGTCTCTTCAATCAAATTCCAAAATTGAAGAAGCTGAACA 72 |||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 6 AAAAACTT-TCTTCCAATGGAGTCTCTTCAATCAAATTCCAAAATCGAAGAAGCTGAACA 64 Query 73 AAATCCCAAAA-TTGAAGAAGCACAAGTCTCAGTATCGCTTCCCGAAGAACCTACCGGAG 131 |||| |||||| ||| ||| |||| ||| | || |||||||| ||| |||| ||| Sbjct 65 AAAT-CCAAAAGGCGAAAAAGTTGAAGTTTCAATTTCTCTTCCCGACGAATCTACTGGA- 122 Query 132 TTCTTCTTCCCTCCGAACTGGTGGACGATTCAGCGCCGCCGGAATCATCCGATGCTGTCG 191 | | || || | ||||||||||| ||||||||||||| ||| || | Sbjct 123 ----AC--CACT-----CT--T----GATTCAGCGCCACCGGAATCATCCGCTGCAGTTG 165 Query 192 AAGAATCAATCGAAACTGCTTCAGAAGCAGAAGTATCAATTTCTCTT-CTCGAAGGAACT 250 |||||||||||||||||| || |||||||||||| |||||||||||| | |||| |||| Sbjct 166 AAGAATCAATCGAAACTGATTTAGAAGCAGAAGTTTCAATTTCTCTTAC-CGAA-GAAC- 222 Query 251 ACCACCGGAACCGCTCTTCTTCCTTCTGAAGAGAATGATTTAGCGCCATTGGAATCGTCC 310 ||||||||| |||||||||||| ||||||| | ||||| || |||| ||||| | ||| Sbjct 223 -CCACCGGAATCGCTCTTCTTCCCTCTGAAGTGGATGATACAGTGCCACTGGAACCATCC 281 Query 311 GGTATAATTGAAGAACCAATCGATACTGATTTAGAGAAATTAGATGTAGTAGCTATGGAT 370 ||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 282 GGTGTAATCGAAGAACCAATCGATACTGATTTGGAGAAAGTAGATGTAGTAGCTATGGAT 341 Query 371 GTTGATCAACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCG 430 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 GTTGATCGACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCA 401 Query 431 ACTACTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 490 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 ACTGCTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 461 Query 491 GGTAGCGCAATGGAAGAAGACGAAGGAGATGAAG-AGCAAGATGATCCACCGCATAAGAA 549 | ||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 462 GTTAGTGCAATGGAAGAAGACGAAGGAGATGAAGAAG-AAGATGATCCACCGCATAAGAA 520 Query 550 GCTTAAGCAGCTAGATTGTCTTACTTCAGTCGCTGTTAAGGAAGAGGAGGAGCCAGAGCA 609 || |||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||| Sbjct 521 GCAGAAGCAGTTAGATTCTATTACTTCAGTTGCTGTTAAGGAAGAGGAAGAGCCAGAGCA 580 Query 610 AGTGCTTCCATCGGAAGCTATGGTTGTGGAGG-A--AGCGGCGACTCTGGTTGCGAGTGC 666 ||||| ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| Sbjct 581 AGTGCAGCCATCGGAAGCAATGGTTGTGGAGGAAGCAGCGGCGACTTTGGTTGCGAGTGC 640 Query 667 GGCTAAGAAATCTAAATCGAAGAAGAAGAACAATAATGTATGGGTGACTAAGAGCACACG 726 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 641 GGCTAAGAAATCGAAATCGAAGAAGAAGAACAATAATGTATGGGTGACGAAGAGTACACG 700 Query 727 TAAGGGAAAGAAGAAGAGTAAAGCCAACACGCCGAATCCAGCAGCTGTAGAAGATAAGGT 786 ||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||| Sbjct 701 CAAGGGAAAGAAGAAGAGTAAAGCCAACACACCTAATTCAGCAGCTGTTGAAGATAAGGT 760 Query 787 ATTGATAACTCCGGTGCCTAGATTTCCCGATAAGGGAGACGATACACCTGACTTGGAAAT 846 ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| Sbjct 761 ATTGATAACTCCGGTTCCTAGAGTTCCCGATAAGGGAGACGATACGCCTGACTTGGAAAT 820 Query 847 TTGCCTTTCTAAAGTATACAAAGCTGAGAAAGTTGAGATAAGTGAAGATAGACTTACTGC 906 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 821 TTGCCTTTCTAAAGTTTACAAAGCTGAGAAAGTTGAGGTAAGTGAAGATAGACTTACTGC 880 Query 907 AGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 966 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 GGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 940 Query 967 GTACTTTGAGATTAAAGTTTTGAGTTTAGGTGAGACTGGTCATACACGACTCGGGTGGTC 1026 ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| Sbjct 941 GTACTTTGAGATTAAAGTTTTGAATTTGGGTGAGTCTGGTCATACACGACTCGGGTGGTC 1000 Query 1027 GACTGATAAAGGGGATTTGCAGGCTCCAGTTGGGTATGATGGGAATAGTTTTGGGTTT-A 1085 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| | Sbjct 1001 AACTGATAAAGGGGATTTGCAGGCTCCGGTTGGGTACGATGGGAATAGTTTTGG-TTTCA 1059 Query 1086 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGACA-TATGCTGAGGAAGGG 1144 |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1060 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGA-AGTATGCTGAGGAAGGT 1118 Query 1145 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGTGAATCTTTTGCT 1204 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1119 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGCGAATCTTTTGCT 1178 Query 1205 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCACCTGATGCT 1264 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1179 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCTCCTGACGCT 1238 Query 1265 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1298 Query 1325 TGTCAGGGAGCGGCCTTCACAGATATTGTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1384 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1299 TGTCAGGGAGTTGCCTTCACAGATATTTTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1358 Query 1385 TACACTCTTCCC-GACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCC-AGTTTTG 1442 |||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1359 TACACTCT-CCCTGACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCTGA-TTTTG 1416 Query 1443 AGTTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTGGGAGGTTCCAT 1502 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1417 AATTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTTGGAGGTTCCAT 1476 Query 1503 ATCATGGATTTAATGGTAGACTTGAAACTAATGGTTCTGAGGATATGAAGAGTTAGGCAG 1562 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1477 ATCATGGATTTAATGGTAGACTTGAAAATAATGGTTCTGATGATATGAAGAGTTAGGCAG 1536 Query 1563 AACCAGCAGGCGTATT 1578 |||||||||||||||| Sbjct 1537 AACCAGCAGGCGTATT 1552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69781328840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5