BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51450.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923630 jgi|Araly1|923630|scaffold_104911.1 2176 0.0
> Ahg923630 jgi|Araly1|923630|scaffold_104911.1
Length=1552
Score = 2176 bits (1178), Expect = 0.0
Identities = 1450/1576 (92%), Gaps = 39/1576 (2%)
Strand=Plus/Plus
Query 13 aaaaaCTTCTGTTTCAATGGAGTCTCTTCAATCAAATTCCAAAATTGAAGAAGCTGAACA 72
|||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 6 AAAAACTT-TCTTCCAATGGAGTCTCTTCAATCAAATTCCAAAATCGAAGAAGCTGAACA 64
Query 73 AAATCCCAAAA-TTGAAGAAGCACAAGTCTCAGTATCGCTTCCCGAAGAACCTACCGGAG 131
|||| |||||| ||| ||| |||| ||| | || |||||||| ||| |||| |||
Sbjct 65 AAAT-CCAAAAGGCGAAAAAGTTGAAGTTTCAATTTCTCTTCCCGACGAATCTACTGGA- 122
Query 132 TTCTTCTTCCCTCCGAACTGGTGGACGATTCAGCGCCGCCGGAATCATCCGATGCTGTCG 191
| | || || | ||||||||||| ||||||||||||| ||| || |
Sbjct 123 ----AC--CACT-----CT--T----GATTCAGCGCCACCGGAATCATCCGCTGCAGTTG 165
Query 192 AAGAATCAATCGAAACTGCTTCAGAAGCAGAAGTATCAATTTCTCTT-CTCGAAGGAACT 250
|||||||||||||||||| || |||||||||||| |||||||||||| | |||| ||||
Sbjct 166 AAGAATCAATCGAAACTGATTTAGAAGCAGAAGTTTCAATTTCTCTTAC-CGAA-GAAC- 222
Query 251 ACCACCGGAACCGCTCTTCTTCCTTCTGAAGAGAATGATTTAGCGCCATTGGAATCGTCC 310
||||||||| |||||||||||| ||||||| | ||||| || |||| ||||| | |||
Sbjct 223 -CCACCGGAATCGCTCTTCTTCCCTCTGAAGTGGATGATACAGTGCCACTGGAACCATCC 281
Query 311 GGTATAATTGAAGAACCAATCGATACTGATTTAGAGAAATTAGATGTAGTAGCTATGGAT 370
||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 282 GGTGTAATCGAAGAACCAATCGATACTGATTTGGAGAAAGTAGATGTAGTAGCTATGGAT 341
Query 371 GTTGATCAACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCG 430
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GTTGATCGACCCGGATCCGATTTGAAAATTGAATCCGATTCATTCTCTGAAGAAGCTCCA 401
Query 431 ACTACTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 490
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ACTGCTTCTTCCTCCGATAACCCTAAATCTCCGAAACTGGATTCTGTGGCTAATCAGAAC 461
Query 491 GGTAGCGCAATGGAAGAAGACGAAGGAGATGAAG-AGCAAGATGATCCACCGCATAAGAA 549
| ||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 462 GTTAGTGCAATGGAAGAAGACGAAGGAGATGAAGAAG-AAGATGATCCACCGCATAAGAA 520
Query 550 GCTTAAGCAGCTAGATTGTCTTACTTCAGTCGCTGTTAAGGAAGAGGAGGAGCCAGAGCA 609
|| |||||| |||||| | |||||||||| ||||||||||||||||| |||||||||||
Sbjct 521 GCAGAAGCAGTTAGATTCTATTACTTCAGTTGCTGTTAAGGAAGAGGAAGAGCCAGAGCA 580
Query 610 AGTGCTTCCATCGGAAGCTATGGTTGTGGAGG-A--AGCGGCGACTCTGGTTGCGAGTGC 666
||||| ||||||||||| ||||||||||||| | |||||||||| |||||||||||||
Sbjct 581 AGTGCAGCCATCGGAAGCAATGGTTGTGGAGGAAGCAGCGGCGACTTTGGTTGCGAGTGC 640
Query 667 GGCTAAGAAATCTAAATCGAAGAAGAAGAACAATAATGTATGGGTGACTAAGAGCACACG 726
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 641 GGCTAAGAAATCGAAATCGAAGAAGAAGAACAATAATGTATGGGTGACGAAGAGTACACG 700
Query 727 TAAGGGAAAGAAGAAGAGTAAAGCCAACACGCCGAATCCAGCAGCTGTAGAAGATAAGGT 786
||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||
Sbjct 701 CAAGGGAAAGAAGAAGAGTAAAGCCAACACACCTAATTCAGCAGCTGTTGAAGATAAGGT 760
Query 787 ATTGATAACTCCGGTGCCTAGATTTCCCGATAAGGGAGACGATACACCTGACTTGGAAAT 846
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 761 ATTGATAACTCCGGTTCCTAGAGTTCCCGATAAGGGAGACGATACGCCTGACTTGGAAAT 820
Query 847 TTGCCTTTCTAAAGTATACAAAGCTGAGAAAGTTGAGATAAGTGAAGATAGACTTACTGC 906
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 821 TTGCCTTTCTAAAGTTTACAAAGCTGAGAAAGTTGAGGTAAGTGAAGATAGACTTACTGC 880
Query 907 AGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GGGAAGTAGTAAAGGGTATAGGATGGTGAGAGCTACAAGAGGAGTTGTTGAAGGAGCTTG 940
Query 967 GTACTTTGAGATTAAAGTTTTGAGTTTAGGTGAGACTGGTCATACACGACTCGGGTGGTC 1026
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 941 GTACTTTGAGATTAAAGTTTTGAATTTGGGTGAGTCTGGTCATACACGACTCGGGTGGTC 1000
Query 1027 GACTGATAAAGGGGATTTGCAGGCTCCAGTTGGGTATGATGGGAATAGTTTTGGGTTT-A 1085
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |
Sbjct 1001 AACTGATAAAGGGGATTTGCAGGCTCCGGTTGGGTACGATGGGAATAGTTTTGG-TTTCA 1059
Query 1086 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGACA-TATGCTGAGGAAGGG 1144
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1060 GGGATATTGATGGGTGTAAGATACATAAGGCTTTAAGGGAGA-AGTATGCTGAGGAAGGT 1118
Query 1145 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGTGAATCTTTTGCT 1204
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1119 TACAAGGAAGGTGATGTTATTGGATTCTACATAAATCTTCCTGATGGCGAATCTTTTGCT 1178
Query 1205 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCACCTGATGCT 1264
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1179 CCAAAGCCTCCTCATTATGTGTTTTATAAAGGGCAGAGATATATTTGTGCTCCTGACGCT 1238
Query 1265 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AAAGAGGAGCCTCCTAAAGTTGTACCAGGCAGTGAAATATCGTTCTTCAAAAATGGTGTA 1298
Query 1325 TGTCAGGGAGCGGCCTTCACAGATATTGTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1384
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1299 TGTCAGGGAGTTGCCTTCACAGATATTTTTGGCGGTCGTTACTACCCTGCTGCTTCGATG 1358
Query 1385 TACACTCTTCCC-GACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCC-AGTTTTG 1442
|||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1359 TACACTCT-CCCTGACCAGTCAAATTGTCTTGTGAAGTTCAATTTTGGCCCTGA-TTTTG 1416
Query 1443 AGTTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTGGGAGGTTCCAT 1502
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1417 AATTTTTCCCTGAGGATTTTGGTGGGCGTGCTACCCCGAGGCCGATGTTGGAGGTTCCAT 1476
Query 1503 ATCATGGATTTAATGGTAGACTTGAAACTAATGGTTCTGAGGATATGAAGAGTTAGGCAG 1562
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1477 ATCATGGATTTAATGGTAGACTTGAAAATAATGGTTCTGATGATATGAAGAGTTAGGCAG 1536
Query 1563 AACCAGCAGGCGTATT 1578
||||||||||||||||
Sbjct 1537 AACCAGCAGGCGTATT 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5