BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51460.1
Length=2285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474258 jgi|Araly1|474258|fgenesh2_kg.1__4212__AT1G51460.1 3531 0.0
Ahg937378 jgi|Araly1|937378|scaffold_501569.1 431 1e-119
> Ahg474258 jgi|Araly1|474258|fgenesh2_kg.1__4212__AT1G51460.1
Length=2213
Score = 3531 bits (1912), Expect = 0.0
Identities = 2103/2195 (96%), Gaps = 13/2195 (1%)
Strand=Plus/Plus
Query 95 ATACATGACTACGCCGGAGGGGGCGATGTATGTGGCGTGGGAGGATCTTACGGTGGTGAT 154
||||||| |||||||||| | ||| ||||||||||||||||| |||||||||||||||||
Sbjct 28 ATACATGTCTACGCCGGAAGAGGCAATGTATGTGGCGTGGGAAGATCTTACGGTGGTGAT 87
Query 155 ACCAAACTTCGGTGAAGGAGCAACTAAGAGATTACTGAATGGAGTGAATGGTTGTGGTGA 214
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 88 ACCAAACTTCGGTGAAGGAGCCACGAAGAGATTACTGAATGGAGTGAATGGTTGTGGTGA 147
Query 215 GCCAAATAGGATCTTAGCTATTATGGGTCCTTCAGGTTCAGGCAAATCTACGCTTCTTGA 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GCCAAATAGGATCTTAGCTATTATGGGTCCTTCAGGTTCAGGCAAATCTACGCTTCTTGA 207
Query 275 TGCTTTAGCAGGAAGATTAGCAGGGAATGTTGTAATGAGTGGCAAAGTACTTGTCAATGG 334
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 208 TGCTTTAGCAGGAAGATTGGCAGGGAATGTTGTAATGAGTGGCAAAGTTCTTGTCAATGG 267
Query 335 CAAGAAGAGAAGACTTGACTTTGGTGCTGCCGCTTATGTGACGCAAGAAGATGTGTTGCT 394
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 268 CAAGAAGAGAAAACTTGACTTTGGTGCTGCCGCTTATGTGACACAAGAAGATGTGTTGCT 327
Query 395 AGGAACTTTGACAGTGAGAGAATCCATATCTTACTCGGCTCATCTCAGGCTCCCTTCAAA 454
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 328 AGGAACTTTAACAGTGAGAGAATCCATATCTTACTCAGCTCATCTCAGGCTCCCTTCAAA 387
Query 455 GCTTACCAGAGAAGAGATCAGTGACATTGTGGAAGCTACAATCACTGACATGGGTCTTGA 514
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 388 GCTTACTAGAGAAGAGATCAGTGACATTGTGGAAGCTACAATTACTGACATGGGTCTTGA 447
Query 515 AGAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGAGGAGAGAA 574
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 448 AGAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGCGGAGAGAA 507
Query 575 GAAACGGCTTAGTATTGCCCTCGAGGTCTTAACAAAACCAAGTCTCCTCTTTCTAGACGA 634
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 508 GAAACGGCTTAGTATTGCGCTCGAGGTCTTAACCAAACCAAGTCTCCTCTTTCTAGACGA 567
Query 635 ACCAACTAGTGGACTGGACAGTGCTTCAGCTTTCTTCGTGGTTCAGATTCTTAGAAACAT 694
|||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 568 ACCAACCAGTGGATTGGACAGTGCTTCAGCTTTCTTTGTGGTTCAGATTCTTAGAAACAT 627
Query 695 AGCAAGCAGTGGCAAAACTGTGGTTTCTTCGATCCATCAGCCGAGTGGTGAGGTTTTCGC 754
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 628 AGCAAGCAGTGGCAAAACTGTGGTTTCTTCAATTCATCAGCCGAGTGGTGAGGTTTTCGC 687
Query 755 CCTCTTTGATGACCTGCTACTTCTGTCTGGAGGAGAAACTGTTTACTTTGGCGAAGCAGA 814
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 688 CCTCTTTGATGACCTTCTACTGCTGTCTGGAGGAGAAACCGTTTACTTTGGCGAAGCAGA 747
Query 815 ATCTGCAACAAAGTTCTTTGGTGAAGCAGGTTTTCCTTGTCCAAGTAGACGGAATCCATC 874
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 748 ATCTGCAACAAAGTTCTTTGGTGAAGCGGGTTTTCCTTGTCCCAGCAGACGGAATCCATC 807
Query 875 AGACCACTTCCTTCGCTGTGTCAATTCCGATTTCGATAATGTCACAGCGGCTTTGGTTGA 934
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 808 TGACCACTTCCTTCGCTGTGTCAATTCAGATTTCGATAATGTCACAGCGGCTTTGGTTGA 867
Query 935 ATCTCGGAGAAT-CAACGATTCATCTTTCTCTC-TTCACCAACTACATGAAACTACAAAC 992
||||||| |||| ||| ||||| |||||||||| || | ||||||||||||||| ||||
Sbjct 868 ATCTCGGCGAATCCAA-GATTCTTCTTTCTCTCATT-ATCAACTACATGAAACTTCAAAT 925
Query 993 ACATTAGATCCTCTGGATGATATACCAACTGCAGAAATTAGAACAACACTTGTCAGAAAA 1052
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 926 ACATTAGATCCTCTGGATGATATACCAACAGCAGAAATTAGAACAACACTTGTCAGAAAA 985
Query 1053 TTTAAGTGTTCACTTTATGCAGCAGCTTCAAGAGCAAGAATTCAAGAAATAGCATCGATA 1112
|| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 986 TTCAAGTGTTCGGTATATGCAGCAACTTCAAGAGCAAGAATTCAAGAAATAGCATCGATA 1045
Query 1113 GTGGGGATTGTCACAGAAAGGAAAAAGGGGAGCCAAACTAATTGGTGGAAACAACTCAGA 1172
| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1046 GAGGGGCTTGTCACAGAAAGGAAAAAGGGGAGCCGAACAAATTGGTGGAAACAACTCAGA 1105
Query 1173 ATACTTACTCAGCGATCTTTCATCAACATGAGTAGAGACTTGGGGTACTACTGGATGCGG 1232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1106 ATACTTACTCAGCGATCTTTCATCAACATGAGTAGAGACGTGGGGTACTACTGGATGCGG 1165
Query 1233 ATTGCAGTCTACATAGTGTTATCCATTTGTGTCGGGTCAATCTTCTTCAACGTCGGGAGA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 ATTGCAGTCTACATAGTGTTATCCATTTGTGTCGGGTCAATCTTCTTCAACGTCGGGAGA 1225
Query 1293 AACCACACAAATGTTATGAGTACTGCAGCTTGTGGCGGATTTATGGCAGGCTTTATGACA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 AACCACACAAATGTTATGAGTACTGCAGCTTGTGGCGGATTTATGGCAGGCTTTATGACA 1285
Query 1353 TTCATGTCAATAGGAGGATTCCAATCCTTCATTGAAGAAATGAAGGTGTTTTCTCGCGAA 1412
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1286 TTCATGTCAATAGGAGGTTTCCAATCATTCATTGAAGAAATGAAGGTGTTTTCTCGGGAA 1345
Query 1413 AGGCTCAATGGACACTATGGGGTTGCAGTATACACTGTGTCTAATTTACTCTCCTCATTA 1472
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1346 AGGCTCAATGGACACTATGGGGTTGCAGTATATACTATGTCTAATTTACTCTCCTCATTA 1405
Query 1473 CCTTTCATAATCCTTATGTGCCTCTCCACCAGCTCAATCACTATCTACATGGTGAGGTTC 1532
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1406 CCTTTCATAATCCTTATGTGCCTCTCCACTAGCTCAATCACTATCTACATGGTGAAGTTC 1465
Query 1533 CAATCCGGAGGTTCTCATTTCTTCTACAACTGTCTCGACCTTATCTGCGCGATTACAACT 1592
||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1466 CAATCTGGAGGTTCTCATTTCTTCTACAATTGTCTCGACCTCATCTGTGCGATTACAACT 1525
Query 1593 GTGGAGAGTTGCATGATGATGATAGCTTCAGTAGTCCCTAACTTCTTGATGGGAGTCATG 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 GTGGAGAGTTGCATGATGATGATAGCTTCAGTAGTCCCTAACTTCTTGATGGGAGTCATG 1585
Query 1653 TTGGGAGCTGGTTACATTGGAATTATGGTGTTAAGTGCGGGGTTTTTCCGATTCTTCCCC 1712
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1586 TTGGGAGCTGGTTACATTGGAATTATGGTGTTAAGTGCGGGTTTTTTCCGATTCTTCCCC 1645
Query 1713 GACTTACCAATGGTGTTCTGGCGATACCCGGTGTCCTACATAAACTATGGTGCATGGGCA 1772
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1646 GACTTACCTATGGTGTTCTGGCGATACCCGGTGTCCTACATAAACTACGGAGCATGGGCA 1705
Query 1773 CTACAGGGAGCATACAAGAATGAGATGATTGGGGTGGAGTATGATTCTCCGTTACCCTTG 1832
||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 1706 CTACAGGGAGCATTCAAGAATGAGATGATTGGGGTCGAGTATGATTCTCCGATACCTTTG 1765
Query 1833 GTACCAAAAATGAAAGGAGAACTCATTCTTCAAACTGTTCTAGGCATAAATCCAGAAAGT 1892
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1766 GTACCAAAAATGAAAGGGGAACTCATTCTTCAAACTGTTTTAGGCATAAATCCAGAAAGA 1825
Query 1893 TCAAAGTGGTTGGATCTAGCAGTTGTGATGATGATTCTCATTGGGTATAGGATTGCCTTC 1952
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1826 TCAAAGTGGTTGGACCTAGCAGTTGTGATGATGATTCTCATTGGGTATAGAATTGCCTTC 1885
Query 1953 TTCGCCATCCTCAAGTTCCGGGAAAAGGTTTTCCCAGTTATTCACATGTTATACACAAAG 2012
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 TTCGCCACCCTCAAGTTCCGGGAAAAGGTTTTCCCAGTTATTCACATGTTATACACAAAG 1945
Query 2013 AGAACTCTGAGCCATATCCAGAAAAGGCCTTCTTTCAGAAGAATGACACCTTTCCCTTCC 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1946 AGAACTCTGAGCCATATCCAGAAAAGGCCTTCTTTCAGAAGAATGACACCTTTCCATTCC 2005
Query 2073 AGGCGATACCCTGTTCACCATGCTCTCTCTTCTCAGGAAGGACTTAACTCTCCACTGCAT 2132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 AGGCGATACCCTGTTCACCATGCTCTCTCTTCTCAGGAAGGACTTAACTCTCCACTGCAT 2065
Query 2133 TAGAAGCATATACAGCAGGATGCAAT-TTCCATATATTTCAATATGTCAGATGTCACTCT 2191
|||| ||||||||||||| ||||||| || |||||||||||||||||||||||| |||||
Sbjct 2066 TAGACGCATATACAGCAGAATGCAATGTTACATATATTTCAATATGTCAGATGTTACTCT 2125
Query 2192 CTTCAAACTTGATAAACTGTTTGTAGCCCGTTGTGTAAGGaaaaaaaaaaGAAAAGAGAG 2251
|||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||
Sbjct 2126 CTTCAAACTTGATAAACTGTTTGTAGCCTGTTGTGTAAG-AAAAAAAAAA-A---GAGA- 2179
Query 2252 ATACTAT-CATTCTGACTAATGAGATTTGTTTAGC 2285
|||||| ||||||||||||| |||||||||||||
Sbjct 2180 -TACTATTCATTCTGACTAATCAGATTTGTTTAGC 2213
> Ahg937378 jgi|Araly1|937378|scaffold_501569.1
Length=697
Score = 431 bits (233), Expect = 1e-119
Identities = 273/293 (93%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 951 GATTCATCTTTCTCTCTTCACCAACTACATGAAACTACAAACACATTAGATCCTCTGGAT 1010
||||| |||||||||||||||||||||||||||||| | |||||||| |||||||| |||
Sbjct 402 GATTCTTCTTTCTCTCTTCACCAACTACATGAAACTTCGAACACATTGGATCCTCTAGAT 461
Query 1011 GATATACCAACTGCAGAAATTAGAACAACACTTGTCAGAAAATTTAAGTGTTCACTTTAT 1070
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| | |||
Sbjct 462 GATATACCAACAGCAGAAATTAGAACAACTCTTGTCAGAAAATTCAAGTGTTCAGTATAT 521
Query 1071 GCAGCAGCTTCAAGAGCAAGAATTCAAGAAATAGCATCGATAGTGGGGATTGTCACAGAA 1130
||||||||||||| ||||||||||||||||||| ||| ||||| |||| |||||||||||
Sbjct 522 GCAGCAGCTTCAAAAGCAAGAATTCAAGAAATAACATTGATAGAGGGGCTTGTCACAGAA 581
Query 1131 AGGAAAAAGGGGAGCCAAACTAATTGGTGGAAACAACTCAGAATACTTACTCAGCGATCT 1190
||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 582 AGGAAAATGGGAAGCCAAACAAATTGGTGGAAACAACTCAGAATACTTACTCAGCGATCT 641
Query 1191 TTCATCAACATGAGTAGAGACTTGGGGTACTACTGGATGCGGATTGCAGTCTA 1243
|| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 642 TTAATCAACATGAGTAGAGACTTGGGGTACTACTGAATGCGGATTGCAGTCTA 694
Score = 255 bits (138), Expect = 8e-67
Identities = 147/151 (97%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 456 CTTACCAGAGAAGAGATCAGTGACATTGTGGAAGCTACAATCACTGACATGGGTCTTGAA 515
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 111 CTTACCAGAGAAGAGATCAGTGACATTGCGGAAGCTACAATCACTGACATGGGTCTTGAA 170
Query 516 GAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGAGGAGAGAAG 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGAGGAGAGAAG 230
Query 576 AAACGGCTTAGTATTGCCCTCGAGGT-CTTA 605
|||||||| ||||||||||||||| | ||||
Sbjct 231 AAACGGCTCAGTATTGCCCTCGAGATTCTTA 261
Score = 222 bits (120), Expect = 8e-57
Identities = 139/148 (94%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 679 AGATTCTTAGAAACATAGCAAGCAGTGGCAAAACTGTGGTTTCTTCGATCCATCAGCCGA 738
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 253 AGATTCTTAGAAACATAGCAAGCAGTGGCAAAACTGTGATTTCTTTAATCCATCAGCCGA 312
Query 739 GTGGTGAGGTTTTCGCCCTCTTTGATGACCTGCTACTTCTG-TCTGGAGGAGAAACTGTT 797
||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||
Sbjct 313 GTGGTGAGGTTTTCGCCCTCTTTGATGACATGCTACTTCTGGT-TGGAGGAGAAACCGTT 371
Query 798 TACTTTGGCGAAGCAGAATCTGCAACAA 825
||||||||| ||||||||||| ||||||
Sbjct 372 TACTTTGGCCAAGCAGAATCTTCAACAA 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86045863455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5