BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51510.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923636 jgi|Araly1|923636|scaffold_104917.1 979 0.0
> Ahg923636 jgi|Araly1|923636|scaffold_104917.1
Length=648
Score = 979 bits (530), Expect = 0.0
Identities = 609/647 (94%), Gaps = 5/647 (1%)
Strand=Plus/Plus
Query 83 ACGGCGGCGGAAGTCATGGCGAACATAGAATCAGAAGCAGTCGATTTCGAGCCAGAGGAG 142
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6 ACGGCGGCGGAAGTTATGGCGAACATAGAATCAGAAGCAGTCGATTTCGAGCCGGAGGAG 65
Query 143 GATGACCTTATGGACGAAGAAGGTACAGCTATTGACGGAGCTGATGTTTCTCCACGCGCG 202
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 66 GATGACCTTATGGACGAAGATGGTACAGCTATTGACGGGGCTGATGTTTCTCCACGCGCA 125
Query 203 GGACATCCGAGGCTTAAGTCGGCTATTGCCGGAGCTAATGGCGAATCAGCAAAGAAGACC 262
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 126 GGACATCCGAGGCTTAAGTCGGCTATTGCCGGAGCAAATGGTGAATCAGCAAAGAAGACC 185
Query 263 AAAGGCCGTGGGTTTCGCGAGGAGAAAGATTCCGATCGTCAGCGTCGTCTTTCCTCACGC 322
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 186 AAAGGCCGTGGGTTTCGCGAGGAGAAAGATTCTGATCGTCAGCGTCGTCTTTCTTCGCGC 245
Query 323 GATTTCGAATCACTTGGTTCAGATGGCCGTCCTGGTCCGCAGAGATCCGTTGAAGGATGG 382
|||||||||||||| ||||| |||||| ||| |||||| ||||||||| |||||||||||
Sbjct 246 GATTTCGAATCACTCGGTTCCGATGGCGGTCGTGGTCCACAGAGATCCATTGAAGGATGG 305
Query 383 ATTATCTTGGTCTCTGGAGTTCATGAGGAGACACAGGAGGAGGATATAACCAATGCTTTT 442
|||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||
Sbjct 306 ATTATCTTGGTCTCTGGAGTTCATGAGGAGGCGCAGGAGGATGATTTAACCAATGCTTTT 365
Query 443 GGTGATTTTGGGGAGATTAAGAATCTAAATCTCAATCTCGATCGCCGTAGTGGTTATGTC 502
||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 366 GGTGATTTTGGGGAGATAAAGAATCTACATCTCAATCTCGATCGCCGTACTGGTTTTGTC 425
Query 503 AAGGGATATGCTTTGATAGAATATGAGAAGAAGGAAGAAGCACAG-AGCGCTATTTCAGC 561
||||| |||||||||||||| ||||||||| | |||||||||||| || |||||||||||
Sbjct 426 AAGGGCTATGCTTTGATAGAGTATGAGAAGTATGAAGAAGCACAGAAG-GCTATTTCAGC 484
Query 562 AATGAATGGTGCTGAGCTTCTAACACAGAATGTTAGCGTTGACTGGGCCTTCAGCAGCGG 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 485 AATGAATGGTGCTGAGCTTCTAACACAGAATGTTAGCGTTGACTGGGCCTTCAGCAGAGG 544
Query 622 TCCCAGTGGTGGTGAATCTTACAGGAGAAAGAACTCGAGGTATGGGAGGTCGCAACGTTC 681
|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 545 TCCCAGTGCTG---AATCTTACAGGAGAAAGAACTCGAGGTCTGGGAGGTCGCAACGTTC 601
Query 682 AAGAAGTCCGAGAAGACGTTACTGATTGTATGATTTGGTGGAGAGTT 728
|||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 602 AAGAAGCCCGAGGAGACGTTACTGATTGTATGATTTGGTGGAGAGTT 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5