BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51520.2
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474265 jgi|Araly1|474265|fgenesh2_kg.1__4219__AT1G51520.1 1892 0.0
> Ahg474265 jgi|Araly1|474265|fgenesh2_kg.1__4219__AT1G51520.1
Length=2007
Score = 1892 bits (1024), Expect = 0.0
Identities = 1240/1341 (92%), Gaps = 27/1341 (2%)
Strand=Plus/Plus
Query 1 AAACATACATTTATGATTTAACGCAAACCCAAAAAGAGCCTTCACCTTTTTTCTCTTCGT 60
|||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct 1 AAACATACATTTATGATTTAACGCAAACCC--AAA-A------A---TTTTTCTCTTCGT 48
Query 61 CTTCTTCACCATCTTGTGGGGAAAAACAAAAC-TTCTCCGGCCATGGATCCTGGCGACCC 119
||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 49 CTTCTTCACCATCTTCTGGGGAAAAACAAAACTTTC-CCGGCCATGGATCCCGGCGACCC 107
Query 120 AACTTCAATAATCTTTTCAAAGATCAGAACTTTCGAACTTGAGAACGCTTCCAGAGTCAT 179
|||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 108 AACTTCGATAATCTTTTCAAAGATCAGAACTTTAGAACCAGAGAACGCTTCCAAAGTCAT 167
Query 180 TGACTATTTTCTCTTGCAAGACATGGAACAAAGAGATTTGATTCGAATTGCTTTTGGTCC 239
|| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 168 TGGCTATTTTCTATTGCAAGACATGGAACAGAGAGATTTGATTCGAATTGCTTTTGGTCC 227
Query 240 TGACTCTCTCATACAGACTTTCTGTCAG-AAAGCTAAAGT-CGATTTAGGTTTTTCCTCG 297
|||||||||||| || |||||||||| | ||||||||| | |||||||||| |||||||
Sbjct 228 TGACTCTCTCATTCAAACTTTCTGTC-GTAAAGCTAAA-TCCGATTTAGGTCTTTCCTCC 285
Query 298 AACGGTTTCTCGAGACCCATCAATATCCATGGCCAGTCATTGTCCTC-GTCTTCTCCCAG 356
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 286 AACGGTTTCTCGAGACCCATCAATATCCATGGCCAGTCATTGT-CTCAGTCTTCTCCCAG 344
Query 357 AAATGGGTTCTTAGAGTTCTCGAGAAACCCTAGTAACCCTTTGTCTTCTTCGTTAACTTT 416
|||||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||
Sbjct 345 AAATGGGTTCTTAGAGTTATCGAGAAACCCTAGCAACCCTTTGTCTCCTTCGTTTACTTC 404
Query 417 GAACACACTCAGAGATAATAAGCCTAACTTCAATTCTAGTCCTTTTCGTGAAAGTTCATC 476
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 405 GAACACACTCAGAG---ATAACCCTAACTTCAATTCTAGTCCCTTTCGTGAAAGTTCATC 461
Query 477 ACTTTTTGCCTCTTCTT-C--CGGCGATGAGCAGCAGCAACAACAATTCAGTAACAACTT 533
||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 462 ACTTTTTGCTTCTTCTTCCGGCGGCGATGAGCAGCAGCAACAACAATTCAGTAACAACTT 521
Query 534 TCTGTTCACAAACGACGAGGACCCATTTGCCAATTCTCACAAGAGGAGTTTCTCTGCTAA 593
| ||||||| ||||||||||| |||||||| |||| |||||||||||||||||| |||||
Sbjct 522 TTTGTTCACCAACGACGAGGATCCATTTGCTAATTTTCACAAGAGGAGTTTCTCGGCTAA 581
Query 594 CGATGCTTGTTTTGAGTCAGAGGAACCATGGTTTGGAGGAGGAAATGGTTGTCATCAATT 653
|||||||||| |||| ||||||||||| ||||||||||||| | |||| ||||| ||
Sbjct 582 CGATGCTTGTCTTGAATCAGAGGAACCGGGGTTTGGAGGAGGGACCGGTTATCATCGGTT 641
Query 654 TCCACAAGGCGGTTTAGTTGATGGTTTTGGTTCCTCTGGTGTCTTTGGATCGCCGAGTGA 713
||||||||||||||||||||||| ||||||||| |||| || ||| || |||||||||||
Sbjct 642 TCCACAAGGCGGTTTAGTTGATGATTTTGGTTCTTCTGCTGGCTTAGGTTCGCCGAGTGA 701
Query 714 GATGGATTACATGCTTGAGGGGATGATGAGGATGAAGTTAGCTCAGCAAAAGAGCATGGT 773
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 702 GATGGATTACATGCTAGAGGAGATGATGAGGATGAAGTTAGCTCAGCAAAAGAGAATGGT 761
Query 774 TGCTGCTCAGTTTATGGCGGCTTGTGGCTCTCCAATGTTGCATAGACACGGATCAGGACA 833
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 762 TGCTGCTCAGTTCATGGCGGCTTGTGGCTCTCCAATGTTGCATAGACAAGGATCAGGGCA 821
Query 834 TTTTGGAGAAGAATGTGGTAACTATTTTAGTCAAGGAAGGCATGAAAGAGAGGATTCAGT 893
||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 822 TTTTGGAGAAGAAGGTGGTTACCATTTTAGTCCAGGAAGGCATGAAAGAGAGGATTCAGT 881
Query 894 CTCTAAACAGATTTACTTGACATTTCCATCTGAAAGCTCCTTCACTGATGAAGACGTCTC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CTCTAAACAGATTTACTTGACATTTCCATCTGAAAGCTCCTTCACTGATGAAGACGTCTC 941
Query 954 AACCTATTTCAGAGATTTTGGACTTGTGGATGATGTGAGGATTCCATATCAGCAGCAAAG 1013
||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 942 AACTTATTTCAGTGATTTTGGACCTGTGGAAGATGTGAGGATTCCATATCAGCAGCAACG 1001
Query 1014 GATGTATGGGTTTGTAACTTTTGCTAAGGCTGAAACTGTGAGAACCATATTAGCTCGTGG 1073
||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1002 GATGTTTGGGTTTGTCACTTTTGCCAAGGCTGAAACCGTGAGAACCATATTAGCTCGAGG 1061
Query 1074 AAACCCTCATTTCATATGTGACTCACGTGTGCTCGTTAAACCATACAAGGAGAAAGGAAA 1133
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AAATCCTCATTTCATCTGTGACTCACGTGTGCTCGTTAAACCATACAAGGAGAAAGGAAA 1121
Query 1134 AATCCTTCAAAAGAGGCAGCAGCAACAACTACACGAGTTGTTGGAGAGAGGGAACTATTC 1193
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1122 AATCCTTCAAAAGAGGCAGCAGCAGCAACTACACGAGCTGTTGGAGAGAGGGAACTATTC 1181
Query 1194 ACCTTCTTCAAGTCCGTCTGGAAAGGACTCGAGGGAACTATATGAATGTCGCTTAGGACC 1253
||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1182 ACCTTCTTCAAGTCCTTCTGGAATGGACTCAAGGGAACTATATGAATGTCGCTTAGGACC 1241
Query 1254 AAGGATGTTTTCAAAGAAGACACAGGAGATGTTGCGAAGAAAAACCGAGCAAGCTGATTT 1313
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1242 AAGGATGTTTTCAAACAAGACACAGGAGATGCTGCGAAGAAAAACCGAGCAAGCTGATTT 1301
Query 1314 ACAACATGCCATAGAACGTAG 1334
|||||| ||||||||| ||||
Sbjct 1302 ACAACAAGCCATAGAA-GTAG 1321
Score = 797 bits (431), Expect = 0.0
Identities = 530/576 (92%), Gaps = 14/576 (2%)
Strand=Plus/Plus
Query 1330 CGTAGTCCTTCTATTGGTTCTCCCTCTCATTTCCCACCTCGATTCAATCATAGTCTTCTC 1389
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1393 CGTAGTCCTTCTATTGGTTCTCCCTCTCATTTTCCGCCTCGATTCAATCATAGTCTTCTC 1452
Query 1390 TTTCAATCAGGAAACAACAACGAAGAAATCATGGAAGGC-GACAGTG-ATAGAAGTGAGA 1447
|||||||||||||||||||||||||||||| ||||||| ||||||| | ||| ||||||
Sbjct 1453 TTTCAATCAGGAAACAACAACGAAGAAATCGTGGAAGGTTGACAGTGGA-AGAGGTGAGA 1511
Query 1448 AAGATCTTCAACAAGTAGCAACCAGCAACGAAGAACGTGGTTACAATAACGGTTTCTACA 1507
||||| |||| ||||||||||||||||| ||||||||||| |||| ||||| |||||||
Sbjct 1512 AAGATGTTCAGCAAGTAGCAACCAGCAATGAAGAACGTGGCTACAGTAACGATTTCTACC 1571
Query 1508 AAGGGCAAGAGACGAGTCTGGAGAATACTCTCCCTGATAGCTTGTTTGGTTCTCCaaaaa 1567
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1572 AAGGGCAAGAGACGAGTCTGGAGAATACTCTTCCTGATAGCTTGTTTGGTTCCCCAAAAA 1631
Query 1568 aaTCTGGCGAAACCTACCAAACCGAGTCTGATACCGAGCATAATAATAAGGAAGCCTCAT 1627
|||| || |||||| ||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1632 AATCCGGTGAAACCAACCAAACCGAGTCTGATACCGAGCATAATAA---GGAAGCATCAT 1688
Query 1628 CAAATCAGTTAGCGTAGCAATGGGCAGAAAGAAGCATGTGTAtgaatgaaaagaaaggtg 1687
| |||||||||| |||| ||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 1689 CGGATCAGTTAGCCTAGCCATGGGCAGAGAGAAGCATGTGTATGAGTGAAAGGAAAGGTG 1748
Query 1688 tagaagactgataaaagaatgaagtagaagagaagaaTTGTCTATATATAGTAAAAGCTA 1747
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1749 TAGAAGACTGATAAAAGAAGGAAGTAGAAGAGAAGAATTGTCTATATATAGAAAAAGCTA 1808
Query 1748 AGAGGTC--A-CATGGAACACAAGAGAGAAGGTTAAAGAGAACAGTTTTAGGATTATAAT 1804
||||||| | |||||||||||| |||||| ||||| ||||||||||||||||||||| |
Sbjct 1809 AGAGGTCTTAACATGGAACACAAAAGAGAAAGTTAACGAGAACAGTTTTAGGATTATA-T 1867
Query 1805 ATCATCTACAATAATAGGATTTTACCACTAATCTC-AGCAACATATGAATAC--AGATCA 1861
||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||
Sbjct 1868 ATCATCTACAATAATAGGATTTTACGACTAATCTCGA-CAACATATGAATACTCAGATCA 1926
Query 1862 ACACAGTAACTGTAACTCACAAGTAGGTTTCTTTTT 1897
|||||||||||| |||||||||||||||||||||||
Sbjct 1927 ACACAGTAACTGAAACTCACAAGTAGGTTTCTTTTT 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74085526525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5