BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51530.2
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314515 jgi|Araly1|314515|fgenesh1_pm.C_scaffold_1003295 529 2e-149
> Ahg314515 jgi|Araly1|314515|fgenesh1_pm.C_scaffold_1003295
Length=1167
Score = 529 bits (286), Expect = 2e-149
Identities = 501/595 (84%), Gaps = 53/595 (9%)
Strand=Plus/Plus
Query 588 CAATTTTGGACCTGTGCTAAG-CGTAAGGATTCCAAATCAGAAG-GAACAGG-TGTATGG 644
|||||||||||||||| | || ||||||||||||||||||| || | || || ||| |||
Sbjct 582 CAATTTTGGACCTGTGGT-AGACGTAAGGATTCCAAATCAGGAGCG-AC-GGATGTTTGG 638
Query 645 GTTTGTCTCTTTCGCTAATGCTGAAACCGTGACAACCATATTGGATCAA-GAAAATCCTC 703
||||||| |||||| |||||||||||||||||||||| |||||| |||| |||| | |||
Sbjct 639 GTTTGTCACTTTCGATAATGCTGAAACCGTGACAACCGTATTGGCTCAAGGAAACT-CTC 697
Query 704 ATCTCATCGGTGAATCACCTGTGAACGTGACAGCGGCAGCAACT-ACAGCAGGTGTTGGT 762
|||| |||||||||||| | | | || ||||||||| | | ||| ||||||
Sbjct 698 ATCTTATCGGTGAATCA-----G--C-T--CA---GCAGCAACTGA-ACCAGCTGTTGG- 742
Query 763 TG-GAGAGAACCTTTT---TC-T----G----TCGGGAATGGACCCAAAGGAGC--GAT- 806
| ||||||||||||| || | | |||||||||||||||| ||| | |||
Sbjct 743 AGAGAGAGAACCTTTTACATCATCCACGTCTTTCGGGAATGGACCCAAGGGATCAAGATG 802
Query 807 ---GTCGC----GACCAAGGAGGTTTCGAAACGAGACACATGAGATGCTGCAAA-GA-AA 857
||||| |||||| || |||| ||||| |||||| ||||||| ||||| || ||
Sbjct 803 AAAGTCGCTTTGGACCAATGATGTTTAGAAACCCGACACAGGAGATGCGGCAAAGGAGAA 862
Query 858 CACCGAGCAAGCTGATCCACAACAAGCCATAGAAGTAGAAGACCAAATAAGAAGGTTATC 917
| | |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 863 -A-TGTGCAAGCTGATTTACAACAAGCCATAGAAGTAGAAGACCAAAGAAGAAGGTTATT 920
Query 918 GAATCTGCAATTGCCTGGCATGGAGAATAAATCTATTCACCATCATCAGCCTAGTCCTTC 977
||||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 921 GAATCTGAAATTGCCTGACATGGAGAATAAATCTATTCACCATCACCAGCGTAGTCCTTC 980
Query 978 TATTGGTTCTCACGCTCATTTCCCATCTCAAGTCAGGGAAGGCGGTAGTGGTACAGGTGA 1037
||| | ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 981 TATCGCTTCTCCCGCTCATTTCCCATCTCAAGTCAGGGAAGGCGATAGTGGTATAGGTGA 1040
Query 1038 GAAAGATCTTGAACAAGTAGAAACCAGCAACGAAGAACATCAAGGGCAAGAGAAGAGTCT 1097
|||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1041 GAAAGATCTTGAGCAAGTAGCAACCAGCAACGAAGAACATCAAGGGCAAGAGAGGAGTCT 1100
Query 1098 GGAGAATACTCTTCCTGATAGTTCGTTTGGTTCCACAAA-AGAATCCGGCGAAAC 1151
|||||||||||||||||||||||||||||||||| |||| | |||||||| ||||
Sbjct 1101 GGAGAATACTCTTCCTGATAGTTCGTTTGGTTCCTCAAATA-AATCCGGCCAAAC 1154
Score = 477 bits (258), Expect = 8e-134
Identities = 486/587 (83%), Gaps = 52/587 (9%)
Strand=Plus/Plus
Query 7 CCCGGC-GACGCAATTGCGACTATCATTAAAAGGATCCTAACTTTGGAACCAGAGCACGC 65
|||||| | | ||| ||||||||||||| |||||||| ||||||| ||||||||| ||||
Sbjct 7 CCCGGCGGTC-CAACTGCGACTATCATTGAAAGGATCATAACTTTAGAACCAGAGAACGC 65
Query 66 TTTGAAAATCATTGGCTATATTCTGTTTCAGGACTTTGGACACACTGAATTGATTCGACT 125
||| ||||||||||||||| ||||||| |||||| ||| | || ||| ||||||| |||
Sbjct 66 TTTCAAAATCATTGGCTATTTTCTGTTGCAGGACATTGAAGACTGTGATTTGATTCAACT 125
Query 126 TGCTTTTTGCCCTGCATTGCATTACAAGTCTTCCCCAAGAAATGAGTTCTTGGACTTCTC 185
||| ||||| ||| || | ||| ||||||||||||||||||||||||||||||||
Sbjct 126 TGC-TTTTG----GCACTG-A--CCAA-TCTTCCCCAAGAAATGAGTTCTTGGACTTCTC 176
Query 186 CAGAAACCCTTACCCTTTGTATCCTTCGTTAACTGGGAATACATTAGGATATTACCCTAA 245
|||||||||| ||||||||| ||||||||||||| ||||||||| |||||| ||||| |
Sbjct 177 CAGAAACCCTAACCCTTTGTCTCCTTCGTTAACTTCGAATACATTCGGATATAACCCTGA 236
Query 246 C-TT--TCATGACGGTTCGTCG------CAACAACAACAATGGAGTAACCA---T---TT 290
| || |||||| ||||||||| ||||||||||||||||||||||| | ||
Sbjct 237 CTTTCGTCATGAAGGTTCGTCGCAACAACAACAACAACAATGGAGTAACCATTTTCCATT 296
Query 291 T-CCAA-TT-C-CC--A-GA-TTT-T-GG-----GTACCCGATTATCAGTTTCCACCAGG 335
| |||| || | || | || ||| | || | ||||| ||||||||||| ||||||
Sbjct 297 TGCCAATTTGCACCAGAGGAGTTTCTCGGCTAATGAACCCGGTTATCAGTTTCTACCAGG 356
Query 336 CGG--T--TT-A--GCTCT--TCCTCCTAGT-GTTTTTGGTCCTCCCAGTGAGAGAATAT 385
||| | || | | | | | ||||| || |||| ||| | |||||||| || ||||
Sbjct 357 CGGTTTAGTTGATGGTTTTGGTTCTCCTGGTGGTTTAGGGT-CGCCCAGTGAAAGGATAT 415
Query 386 CTCCAAATCAGCAACAAAGAATGATTGCTACTCATGGCTCTCCAGTGTCGAACATACAAG 445
|||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 416 CTCCGAATCAGCAACAAAGAATGATTGCTGCTCATGGCTCACCAATGTCGAACATACAAG 475
Query 446 GATCAGGACAATTTGGAATAGAAGGTGGTTTTGGGTCGCCGAGTGAGCAACAACGAATGA 505
|||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 476 GATCTGGACAATTTGGAGTAGAAGGTGGTTTTGGGTCGCCGAGTGAGCAAAAAAGAATGA 535
Query 506 TTGCTCCTCAGTTCATGGGGGATTTTGGCTCTCGAATGTCGAACATC 552
| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 536 TCGCTCCTCTGTTCATGGGGGATTTTGGCTCTCCAATGTCGAACATC 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5