BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51540.1
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318850 jgi|Araly1|318850|fgenesh1_pm.C_scaffold_3001866 1275 0.0
Ahg474268 jgi|Araly1|474268|fgenesh2_kg.1__4222__AT1G51550.1 641 0.0
> Ahg318850 jgi|Araly1|318850|fgenesh1_pm.C_scaffold_3001866
Length=1230
Score = 1275 bits (690), Expect = 0.0
Identities = 943/1067 (88%), Gaps = 10/1067 (1%)
Strand=Plus/Plus
Query 328 AAGAAGAAGAAGGATAGTGTGAAGGAAAGGAAACTGTCT-AATACGTTTCAAGATTT-GC 385
|||||||||||||||| || |||||||||||| ||| | |||||||||||||| |
Sbjct 169 AAGAAGAAGAAGGATAAAGTTCGGGAAAGGAAACTTTCTGCA-ACGTTTCAAGATTTAG- 226
Query 386 CTGCTCCTGAATTGAAATGGGAGAAGATGGCAGCTTCACCTGTACCTCGTCTAGACGGAG 445
||||||||||| | ||||||||||||||| ||||| | ||||| |||||||| || ||||
Sbjct 227 CTGCTCCTGAACTCAAATGGGAGAAGATGACAGCTGCTCCTGTGCCTCGTCTTGATGGAG 286
Query 446 CTGCAATTCAGATTAGGGATCTTCTTTATGTATTTGCTGGATATGGAACCATTGATCTTG 505
|||| |||||||||||| || |||| ||||| |||||||| || || ||||||||| |||
Sbjct 287 CTGCGATTCAGATTAGGAATTTTCTATATGTGTTTGCTGGTTACGGCACCATTGATATTG 346
Query 506 TGCATTCACATGTCGATATCTACAATTTCACTGATAACT-CGTGGGGAGGAAGATTCAAT 564
| ||||| ||||| ||||| ||||||||| |||||| | | |||||||||||||| ||
Sbjct 347 TACATTCCCATGTTGATATATACAATTTCGTTGATAA-TACATGGGGAGGAAGATTTGAT 405
Query 565 ATGCCAAAAGATATGGCGCATTCTCATTTAGGGATGGTAACGGATGGGCGATACATTTAT 624
||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||| ||
Sbjct 406 ATGCCAAAAGAGATGGCACATTCACATTTAGGGATGGTTACGGATGGAAGATACATCTAC 465
Query 625 ATTGTTACTGGTCAGTTTGGTCCACAATGCAGAGGTCCTACAGCTAAAACATTTGTGCTT 684
|||||||||||||| | |||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 466 ATTGTTACTGGTCAATATGGTCCTCAATGTAGAGGGCCTACAGCTAAAACATTTGTGCTT 525
Query 685 GATACTGATACAAATACATGGAAG-GACTTTGTTCCTTTACCAGTTCCTAGGTATGCACC 743
|| |||||||||||| | ||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 526 GACACTGATACAAATTCGTGG-AGTGACTTTGTTCCTTTTCCAGTTCCTAGGTATGCTCC 584
Query 744 AGCTACTCAGCTTTGGAGAGGAAGACTTCATGTGATGGGTGGAAGCAAAGAGAATCGATT 803
|||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 585 AGCTACTCAGCTATGGAGAGGAAGACTCCACGTGATGGGTGGAAGCAAGGAGAATCGGCA 644
Query 804 TACACCAGGACTTGAACATTGGAGCATCGCAGTGAAAGATGGCAAATCTTTGGAAAATGA 863
|||||||| |||||||| ||||| || ||||| |||||||| ||| | ||||||| ||
Sbjct 645 CACACCAGGGCTTGAACACTGGAGTATTGCAGTAAAAGATGGGAAAGCAATGGAAAAGGA 704
Query 864 GTGGAGAAGTGAAATCCCGATCCCTCGTGGAGGACCTCACAGGGCATGTGTAGTAGTTGA 923
||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 705 GTGGAGAAGTGAAATTCCAATCCCTCGTGGAGGACCTCACAGAGCATGTGTGGTAGTGGA 764
Query 924 TGACCGACTATTTGTAATTGGTGGTCAAGAAGGTGATTTCATGGCTAAACCTGGATCTCC 983
|||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 765 TGACCGGCTTTTTGTCATTGGTGGTCAAGAAGGTGATTTCATGGCTAAACCAGGATCTCC 824
Query 984 AATCTTCAAATGCTCACGCCGTATGGAGGTGGTATTCAGTGATGTCTACATGTTGGATGA 1043
|| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 825 TATTTTCAAATGCTCACGCCGTATGGAGGTGGTGTTCAGTGATGTCTACATGCTGGATGA 884
Query 1044 GGAAATGAAATGGAAAGTTATGCCGCCGATGCCAAAACCGGACTCCCATATCGAATTTGC 1103
||||||||| |||||||||||||| ||||||||||||| || |||||||| ||||||||
Sbjct 885 GGAAATGAAGTGGAAAGTTATGCCATCGATGCCAAAACCCGATTCCCATATTGAATTTGC 944
Query 1104 TTGGAAAGTCGTTAATAACTCCATTGTAATCGTTGGAGGCACAACAGAGAAACATCCTGA 1163
||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 945 TTGGAAAGTTGTTAACAACTCCATTGTAATCGTTGGAGGCACCACAGAGAAGCATCCTGA 1004
Query 1164 AACCAAAAAGATGGTTCTCGTTGGTGAAATCTTCCAGTTCAACTTAAATACACTGAAATG 1223
||||||||||||||| || |||||||||||||||||||||||| | |||||| |||||||
Sbjct 1005 AACCAAAAAGATGGTCCTTGTTGGTGAAATCTTCCAGTTCAACCTGAATACAATGAAATG 1064
Query 1224 GTATGTGATTGGGAAA-TTACCATACCGTGTGAAGACAACGCTGGCTGGGTATTGGGATG 1282
|||||||||||| ||| || ||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1065 GTATGTGATTGG-AAAGTTGCCATACCGTGTGAAGACTACGCTGGTTGGGTATTGGGAGG 1123
Query 1283 GACAGTTATACTTCACCTCAGGACAAAGAGACAAAGGTCCAGATGATCCCGCCCCGAGGA 1342
| ||||||||||||||||| || ||| |||||||||| |||||||||||||| ||| | |
Sbjct 1124 GGCAGTTATACTTCACCTCGGGGCAACGAGACAAAGGGCCAGATGATCCCGCACCGCGTA 1183
Query 1343 AGGTCATGGCAGAGATGTGGAGAACCAAATTGATACTCAACCCATGA 1389
|||| |||||||||||||||||||||||| ||||| | || ||||||
Sbjct 1184 AGGTGATGGCAGAGATGTGGAGAACCAAACTGATATTGAATCCATGA 1230
> Ahg474268 jgi|Araly1|474268|fgenesh2_kg.1__4222__AT1G51550.1
Length=2052
Score = 641 bits (347), Expect = 0.0
Identities = 404/431 (94%), Gaps = 5/431 (1%)
Strand=Plus/Minus
Query 1113 CGTTAATAACTCCATTGTAATCGTTGGAGGCACAACAGAGAAACATCCTGAAACCAAAAA 1172
||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct 2052 CGTTAATAACTCCATTGTAATTGTTGGAGGCACAACAGAGAAGCATCCTGGAACCAAAAA 1993
Query 1173 GATGGTTCTCGTTGGTGAAATCTTCCAGTTCAACTTAAATACACTGAAATGGTATGTGAT 1232
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1992 GATGGTTCTCGTTGGTGAAATCTTTCAGTTCAACTTAAATACA-AGAAATGGTATGTGAT 1934
Query 1233 TGGGAAATTACCATACCGTGTGAAGACAACGCTGGCTGGGTATTGGGATGGACAGTTATA 1292
|||||||||||||||||||||||| |||||||||| |||||||||||||||||| || ||
Sbjct 1933 TGGGAAATTACCATACCGTGTGAAAACAACGCTGGTTGGGTATTGGGATGGACATTTGTA 1874
Query 1293 CTTCACCTCAGGACAAAGAGACAAAGGTCCAGATGATCCCGCCCCGAGGAAGGTCATGGC 1352
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1873 CTTCACCTCAGGGCAAAGAGACAAAGGTCCAGATGATCCCGCCCCAAGGAAAGTCATCGC 1814
Query 1353 AGAGATGTGGAGAACCAAATTGATACTCAACCCATGAGGCAAGCAAGTTTGTTTTTCATA 1412
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1813 AGAGATGTGGAGAACCAAATTGATACTCAACCCATGAGGCAAGCAAATTTGTTTTTGATA 1754
Query 1413 GCACAAAATTCTGCATTCTTTGTATCTAATTCAAACAAGTCCTTACATTACATATTTACA 1472
| |||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1753 GAACAAAATTCTACATTCTGAGT--CTAATTCAAACAAGTCCTTACATTACATATTTACA 1696
Query 1473 TCCACTGTCATGGAATTTTGTATATTGTAAACTGAATCAGAATCTATAAGAAAGTTCC-A 1531
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1695 TCCACTATCATGGAAATTTGTATATTGTAAACTGAATCAGAATCTATAAGAAAGTTCCTA 1636
Query 1532 GTTTCAACACA 1542
|| |||||||
Sbjct 1635 ATT-CAACACA 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5