BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51560.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923642 jgi|Araly1|923642|scaffold_104923.1 1921 0.0
Ahg479631 jgi|Araly1|479631|fgenesh2_kg.3__2332__AT3G21140.1 963 0.0
> Ahg923642 jgi|Araly1|923642|scaffold_104923.1
Length=1216
Score = 1921 bits (1040), Expect = 0.0
Identities = 1162/1221 (95%), Gaps = 7/1221 (1%)
Strand=Plus/Plus
Query 60 AGCGATCTTGTTTCTCTACCATGGATGCTGCTATCTTTACTTC-CGTATACGTTTGCAAT 118
||||||||||||||||||||||||| ||||||||||||||||| | || |||||| ||||
Sbjct 1 AGCGATCTTGTTTCTCTACCATGGAAGCTGCTATCTTTACTTCAC-TAAACGTTTCCAAT 59
Query 119 ATACCAAAGACGAAGAAGGCTTTCTTCAACCCGAATCCGCCTGCTCTATCTTCGTCTTCT 178
|||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 60 TTACCAAAGAC---GAAGGCTTTCTTCAACACGAATTCACCTGCTCTATCTTCGTCTTCT 116
Query 179 TGTTGGCTCTGCAATTCG-CAAGCCAAGCAAATCATAAAACTGAGAATCAGGGAAGGCTC 237
|||||||||||||||||| | |||||||| |||| | |||||||| ||||||| || ||
Sbjct 117 TGTTGGCTCTGCAATTCGTC-AGCCAAGCGAATCGTTAAACTGAGGCTCAGGGAGGGATC 175
Query 238 GAATCAGGGGCTTCTTCGTGTACATGCTCTGTTTAACAACGAGGAGGCATCAAGTGAAAG 297
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 176 GAATCAAGGGCTTCTTCGTGTACATGCTCTGTTTCACAACGAGGAGGCATCAAGTGAAAG 235
Query 298 TGAAGATAAGAATGGGTTTGGTTTGCTACCTGCGGATATTTTCTCTTTGCCTCAGGAGAA 357
|||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 236 CGAAGATAAGAATGGATTTGGTTTGTTACCTGCGGATATTTTCTCTTTGTCTCAGGAGAA 295
Query 358 GTTTGGAAGTAATGTAAGTGGTGAAAAGGATAGTGAAAATATAATTGATGTAGAGACATC 417
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 296 GTTTGGAAGTAATGTAAGTGGTGAAAAGGATAGTGATAATATAATCGATGTGGAGACTTC 355
Query 418 TCTTGCGGTTCCTCATGGTGGAGGAACTCGAGCTGGGCTCTTTAGAACTCCGATTTCTGG 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCTTGTGGTTCCTCATGGTGGAGGAACTCGAGCTGGGCTCTTTAGAACTCCGATTTCTGG 415
Query 478 TGGTGTTCAAAGCGCAACCTCTGCTCACGGTTTACCTCGACCTGCTTTAGCTGTTAGGAA 537
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 416 TGGTGTTCAAAGCGCAACCTCGGCTCATGGTTTACCTCGACCAGCTTTAGCTGTTAGGAA 475
Query 538 CTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACTGTGATGTCTAAAATGCACCATCG 597
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 476 CTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACAGTGATGTCTAAAATGCACCATCG 535
Query 598 TAGAGAAGGGTACCCATTTGGATCGTTGGTAGATTTTGCACCTGATCCGATGGGGCACCC 657
||||||||| || || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 536 TAGAGAAGGCTATCCGTTTGGCTCTTTGGTAGATTTTGCACCTGATCCGATGGGGCACCC 595
Query 658 AATATTTTCATTTTCACCGTTGGCTATTCACACTCGGAATATCTTAGCTGAACCTAGATG 717
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 AATATTTTCATTTTCACCGTTGGCTATTCACACGCGGAATATCTTAGCTGAACCTAGATG 655
Query 718 CACCCTCGTTGTTCAGATACCAGGATGGAGTTGCTTATCGAATGCAAGAGTAACATTATT 777
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 CACCCTAGTTGTTCAGATACCCGGATGGAGTTGCTTATCGAATGCAAGAGTAACATTATT 715
Query 778 CGGCGATGTCTACCCATTGCCAGAAGAGCAGCAAGAATGGGCCCATAAGCAGTATATGTT 837
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 CGGCGATGTCTACCCATTGCCAGAAGATCAGCAAGAATGGGCCCATAAGCAGTATATGTT 775
Query 838 GAAGCATCACCAAGGACCTTCCCAACAATGGGGAAACTTTCACTATTTTAGAATGCAGAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAAGCATCACCAAGGACCTTCCCAACAATGGGGAAACTTTCACTATTTTAGAATGCAGAA 835
Query 898 CATAAGTGATATATATTTCATTGGAGGTTTTGGCACTGTCGCGTGGATCAATGTCAATGA 957
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 836 CATATGTGATATATATTTCATTGGAGGTTTTGGCACTGTCGCGTGGATCAACGTCAATGA 895
Query 958 GTACGAGACTCTTCAGCCAGATAAGATAGCTGTTGATGGAGGTGAGCAAAATCTGAAGGA 1017
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 896 GTACGAGGCTCTTCAGCCAGATAAGATAGCTGTTGATGGAGGTGAGCAAAATCTAAAGGA 955
Query 1018 ACTTAATGCAATCTTCTCAAAGCCACTTAGAGAGTTATTGTCTAGTGAAGCCGAGCTAGA 1077
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 956 ACTCAATGCCATCTTCTCAAAGCCACTTAGAGAGTTATTGTCTAGTGAAGCCGAGGTCGA 1015
Query 1078 CGATGCTGCTATCATTTCTATAGATAGCAAAGGGATTGATATAAGGGTTCGTCAAGGTGC 1137
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 1016 CGATGCTGCTATCATTTCTATAGATAGCAAAGGGGTCGATATAAGAGTTCGTCAAGGTGC 1075
Query 1138 TCAGTTTAAGATACAAAGGCTAGCCTTTGAGGAAAGTCATGGTGTTGAGACTTTAGAAGA 1197
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1076 TCAGTTTAACATACAAAGGCTAGCCTTTGAGGAAAGTCATGGTGTTGATACTTTAGAAGA 1135
Query 1198 AGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGCAAGTTGCACAATTTGCAGAAATG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGCAAGTTGCACAATTTGCAGAAATG 1195
Query 1258 ACCCAAACGTTTCATGGATTT 1278
||||||| |||||||||||||
Sbjct 1196 ACCCAAAGGTTTCATGGATTT 1216
> Ahg479631 jgi|Araly1|479631|fgenesh2_kg.3__2332__AT3G21140.1
Length=1487
Score = 963 bits (521), Expect = 0.0
Identities = 917/1105 (83%), Gaps = 40/1105 (4%)
Strand=Plus/Plus
Query 172 GTCTTCTTGTTGGCTCTGCAATTCGCAAGCC---AAGCAAATCATAAAACTGAGAATCAG 228
|||||| |||||| | || ||||||| | || |||||| || || ||||||||||
Sbjct 217 GTCTTCCTGTTGGTTATGTAATTCGCTACCCAAAAAGCAATTCCCGAAGCTGAGAATCA- 275
Query 229 GGAA-GGCTCGAA-TCAGGGGCTTCTTCGTGTACATGCTCTGTTTA-ACAACGAGGAGGC 285
| || || || || ||| ||| |||||| |||| ||||| ||| | ||||| || |
Sbjct 276 GTAATGGATC-AAGTCACGGG---CTTCGTATACAAGCTCT-CTTACATAACGA-GA--C 327
Query 286 ATCAAGTGAAAGTGAAGATAAGAATGGGTTTGGTTTGCTACCTGCGGATATTTTCTCTTT 345
| |||||||| | |||||||| |||||||| ||||| | |||| |||||| ||||||||
Sbjct 328 ACCAAGTGAAGGCGAAGATAATAATGGGTTCGGTTTTTTTCCTGGGGATATCTTCTCTTT 387
Query 346 GCCTCAGGAGAAGTTTGGAAGTAAT-GTAAGTGGTGAAAAGGATAGTGAAAATATAATTG 404
| ||||| ||| | || |||||| | || ||||| ||| | | | | | |||| |
Sbjct 388 ATCACAGGAAAAGCTCGGGAGTAATAGCAA-TGGTG-AAA--CTTCTCATAGTGTAATCG 443
Query 405 ATGTAGAGACATCTCTTGCGGTTCCTCA--TG-GTGGAGGAACTCGAGCTGGGCTCTTTA 461
|||| ||| |||||||||| |||||| | ||||||||| |||||||||||| ||||
Sbjct 444 ATGTGGAGGCATCTCTTGCACATCCTCAGGGGAGTGGAGGAAATCGAGCTGGGCTTTTTA 503
Query 462 GAACTCCGATTTCTGGTGGTGTTCAAAGCGCAACCTCTGCTCACGGTTTACCTCGACCTG 521
||||||| || |||||||||||||||| || || || ||||| | ||||||||| ||||
Sbjct 504 GAACTCCAATATCTGGTGGTGTTCAAAATGCTACATCAGCTCATGCTTTACCTCGGCCTG 563
Query 522 CTTTAGCTGTTA-GGAACTTGATGGAGCAGGCCAGGTTTGCTCATCTATGCACTGTGATG 580
||||||||| || |||||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct 564 CTTTAGCTG-TACGGAACTTGTTGGAACAGGCTAGGTTTGCTCATCTATGCACAGTGATG 622
Query 581 TCTAAAATGCACCATCGTAGAGAAGGGTACCCATTTGGATCGTTGGTAGATTTTGCACCT 640
|| ||||||||||| || || ||||| ||||||||||| || ||||||||||||||||||
Sbjct 623 TCCAAAATGCACCACCGCAGGGAAGGATACCCATTTGGCTCATTGGTAGATTTTGCACCT 682
Query 641 GATCCGATGGGGCACCCAATATTTTCATTTTCACCGTTGGCTATTCACACTCGGAATATC 700
|||| |||||| || |||||||||| ||||||||||||||| || ||||| || ||| ||
Sbjct 683 GATCGGATGGGACATCCAATATTTTTATTTTCACCGTTGGCCATCCACACACGAAATCTC 742
Query 701 TTAGCTGAACCTAGATGCACCCTCGTTGTTCAGATACCAGGATGGAGTTGCTTATCGAAT 760
|| |||||||| ||||||| |||||||| |||||||| ||||||||| ||||||| |||
Sbjct 743 TTGGCTGAACCGAGATGCAGTCTCGTTGTCCAGATACCTGGATGGAGTGGCTTATCTAAT 802
Query 761 GCAAGAGTAACATTATTCGGCGATGTCTACCCATTGCCAGAAGA-GCAGCAAGAATGGGC 819
|| ||||| |||||||| || ||||| ||||||||| ||||||| | | || || |||||
Sbjct 803 GCTAGAGTGACATTATTTGGTGATGTATACCCATTGTCAGAAGATG-AACAGGAGTGGGC 861
Query 820 CCATAAGCAGTATA-TGTTGAAGCATCAC-CAAGGACCTTCCCAACAATGGGGAAACTTT 877
|||||||| |||| || | ||||| | | || || ||||| | |||||||||||||||
Sbjct 862 TCATAAGCAATATATTGCT-AAGCA-CCCGCACGGGCCTTCTGAGCAATGGGGAAACTTT 919
Query 878 CACTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGTTTTGGCACTGTC 937
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 920 CACTATTTTAGAATGCAGAACATAAGTGATATATATTTCATTGGAGGCTTTGGCACGGTC 979
Query 938 GCGTGGATCAATGTCAATGAGTACGA-GACTCTT-CAGCCAGATAAGATAGCTGTTGATG 995
|| ||| | ||||||| ||||| || | || || || ||||||||||||||||||||||
Sbjct 980 GCTTGGGTTGATGTCAAAGAGTATGAAG-CT-TTACAACCAGATAAGATAGCTGTTGATG 1037
Query 996 GAGGTGAGCAAAATCTGAAGGAACTTAATGCAATCTTCTC-AAAGCCACTTAGAGAGTTA 1054
| ||||||| || || |||||||| ||||| |||||||| ||| || || |||||| ||
Sbjct 1038 GTGGTGAGCGGAACCTCAAGGAACTAAATGCCATCTTCTCGAAA-CCGCTGAGAGAGCTA 1096
Query 1055 TTGTCTAGTGAAGCCGAGCTAGACGATGCTGCTATCATTTCTATAGATAGCAAAGGGATT 1114
|||||| |||| | ||| |||||||||||||| | |||||||||||||||||||| ||
Sbjct 1097 CTGTCTACTGAATCAGAGGTAGACGATGCTGCTCTAATTTCTATAGATAGCAAAGGAATA 1156
Query 1115 GATATAAGGGTTCGTCAAGGTGCTCAGTTTAAGATACAAAGGCTAGCCTTTGAGGAAAGT 1174
||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 1157 GATGTACGGGTTCGTCAAGGTGCTCAGTTTAACATACAAAGGCTAGCATTTGAGGAAGGT 1216
Query 1175 CATGGTGTTGAGACTTTAGAAGAAGCCAAATCTGCACTGTGGAAAGTGATAGAGAAGGGC 1234
|||||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||| |
Sbjct 1217 CATGGTGTTGAGACACTAGAAGAAGCTAAATCTGCACTATGGAAAGTGATGGAGAAGGTC 1276
Query 1235 AAGTTGCACAATTTGCAGAAATGAC 1259
||| || | | ||||||||||||||
Sbjct 1277 AAGCTG-A-A-TTTGCAGAAATGAC 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5