BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51580.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474271 jgi|Araly1|474271|fgenesh2_kg.1__4225__AT1G51580.1 3116 0.0
> Ahg474271 jgi|Araly1|474271|fgenesh2_kg.1__4225__AT1G51580.1
Length=1938
Score = 3116 bits (1687), Expect = 0.0
Identities = 1859/1942 (96%), Gaps = 11/1942 (1%)
Strand=Plus/Plus
Query 2 AAACGACGTTGTTAAGCTTATTCGACTAATGGAGTTCTCTACCTCAAAACGTCCGGCGAC 61
||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAACGACGTCGTTAAGCTTAGTCGACTAATGGAGTTCTCTTCCTCAAAACGTCCGGCGAC 60
Query 62 GACAGCGACGGCGGCGGAGTCTGTACATTTCCGTCTTCTCTGTCCGGCAACAAGAACTGG 121
||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||
Sbjct 61 GACAGCGACGGCGGCGGAGTCTGTACATTTCCGCCTTCTCTGTCCTGCCTCAAGGACTGG 120
Query 122 TGCAATAATCGGAAAAGGCGGCTCAGTCATTCGACACCTCCAATCTGTAACCGGTTCAAA 181
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 TGCAATAATCGGAAAAGGTGGCTCAGTCATTCGCCACCTCCAATCTGTAACCGGTTCAAA 180
Query 182 AATCCGCGTCATCGATGATATTCCCGTTCCTTCAGAAGAGCGTGTAGTGTTGATAATCGC 241
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AATCCGCGTCATCGATGATATTCCGGTTCCTTCAGAAGAGCGTGTAGTGTTGATAATCGC 240
Query 242 ACCTAGTGGAAAGAAGAAGGACGAATCGAATGTGTGTGATTCCGAAAACCCTGGCTCTGA 301
||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||
Sbjct 241 ACCAAGTGGAAAGAAGAAGGACGATTCGAATGTGTGTGATTTGGAAAACCCTAGCTCGGA 300
Query 302 AGAGCCTAAGCAAGAGAAAGGGAGCGAGTGTGCGGGGACTAGTGGTGGAGATGACGAGGA 361
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGCCGAAGCAAGAGAAAGGGAGCGAGTGTGCGGGGACTAGTGGTGGAGATGACGAGGA 360
Query 362 AGCGCCGTCGTCGGCGCAGATGGCTTTACTTAGGGTTTTCGAAAGAATAGTGTTTGGCGA 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 361 AGCGCCGTCGTCGGCGCAGATGGCTTTACTTAGGGTTTTAGAAAGAATAGTGTTTGGTGA 420
Query 422 TGACGCTGCTACGGTTGATGGTGATGAATTGGATAAAGGTGAGAGTGAAGGTTTGTGTAG 481
||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TGATGCTGCTTCTGTTGATGGTGATGAATTGGATAAAGGTGAGAGTGAAAGTTTGTGTAG 480
Query 482 GATGATTGTTAGAGGTAATCAAGTAGATTACTTGATGAGTAAAGGAGGGAAGATGATTCA 541
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GATGATTGTTAGAGGCAATCAAGTAGATTTCTTGATGAGTAAAGGAGGGAAGATGATTCA 540
Query 542 GAAGATTAGAGAAGATAGTGGAGCTATTGTTAGGATCTCATCTACTGATCAGATTCCTCC 601
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 541 GAAGATTAGAGAAGATAGTGGAGCTATTGTTAGGATTTCTTCTACTGATCAGATTCCTCC 600
Query 602 TTGTGCTTTCCCTGGAGATGTTGTGATTCAGAT---G--AA-TGGAAAGTTTTCGAGTGT 655
||||||||| ||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 601 TTGTGCTTTTCCTGGAGATGTTGTGATTCAGATGAAGATAACTGGAAAGTTTTCGAGTGT 660
Query 656 GAAGAAGGCGCTTTTGTTGGTTACAAACTGTCTTCAAGAAAGTGGTGCACCTCCAACATG 715
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||
Sbjct 661 GAAGAAGGCGCTTTTGTTGATCACAAACTGTCTTCAAGAAACTGGTGCACCTCCAACTTG 720
Query 716 GGACGAGTGTCCGTTTCCGCAGCCTGGTTATCCGCCTGAGTATCATTCTATGGAGTATCA 775
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 721 GGATGAGTGTCCGTTTCCGCAGCCTGGTTATCCGCCGGATTATCATTCTATGGAATATCA 780
Query 776 TCCTCAATGGGATCATCCTCCTCCTAATCCAATGCCTGAAGATGTTGGACCCTTTAATAG 835
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 TCCTCAATGGGATCA---TCCTCCTAATCCAATGCCTGAAGACGTTGGACCCTTTAATAG 837
Query 836 ACCGGTTGTTGAAGAGGAGGTTGCGTTCAGGTTGTTATGCCCGGCTGATAAAGTTGGAAG 895
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 838 ACCGGTTGTTGAAGAGGAGGTTGCGTTCAGGCTGTTATGCCCGGCTGATAAAGTTGGAAG 897
Query 896 CTTGATTGGGAAAGGTGGAGCTGTGGTGCGAGCTCTGCAAAACGAAAGCGGTGCGTCAAT 955
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 898 CTTGATTGGGAAAGGTGGAGCTGTGGTTCGGGCTCTGCAAAACGAAAGCGGTGCATCAAT 957
Query 956 CAAGGTTTCGGATCCAACTCATGATTCAGAGGAGCGGATTATTGTGATATCGGCACGAGA 1015
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 958 CAAGGTTTCGGATCCAACTCATGATTCAGAGGAGCGGATTATTGTTATATCGGCACGAGA 1017
Query 1016 GAACTTGGAGAGAAGGCACTCTCTTGCCCAAGATGGTGTGATGCGTGTGCATAATAGAAT 1075
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 1018 GAACTTGGAGAGAAGGCACTCTCTTGCTCAAGATGGTGTAATGCGTGTGCATAATCGAAT 1077
Query 1076 TGTTGAGATTGGATTTGAACCTAGTGCTGCTGTTGTTGCCCGGCTTCTTGTACATTCTCC 1135
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1078 CGTTGAGATTGGATTTGAACCTAGTGCTGCAGTTGTTGCCCGGCTTCTTGTACATTCTCC 1137
Query 1136 ATATATCGGACGTCTATTGGGTAAAGGGGGTCATTTGATAAGTGAAATGAGGAGAGCAAC 1195
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATATATTGGACGTCTATTGGGTAAAGGGGGTCATTTGATAAGTGAAATGAGGAGAGCAAC 1197
Query 1196 TGGTGCTAGCATCCGCGTCTTTGCGAAAGATCAAGCTACAAAGTATGAATCACAACATGA 1255
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1198 TGGTGCTAGCATCCGCGTCTTTGCGAAAGACCAAGCGACAAAGTATGAATCACAACATGA 1257
Query 1256 TGAGATTGTTCAGGTCATTGGTAATTTGAAAACTGTTCAAGATGCTTTGTTCCAAATATT 1315
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGAGATTGTTCAGGTCATTGGCAATTTGAAAACTGTTCAAGATGCTTTGTTCCAAATATT 1317
Query 1316 ATGTAGGCTTCGGGAAGCAATGTTTCCTGGAAGACTTCCTTTTCAAGGAATGGGTGGTCC 1375
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1318 ATGCAGGCTTCGGGAAGCAATGTTTCCTGGAAGACTTCCCTTTCAAGGACTGGGTGGTCC 1377
Query 1376 ACCTCCGCCGTTCATGGGTCCGTATCCAGAACCGCCTCCCCCATTTGGACCGAGACAATA 1435
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1378 ACCTCCGCCGTTCATGGGTCCGTATCCAGAACCGCTTCCTCCATTTGGACCGAGACAATA 1437
Query 1436 TCCAGCTTCTCCAGATCGTTACCATTCTCCAGTAGGACCATTCCATGAGAGGCATTGTCA 1495
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1438 TCCAGCTTCTCCAGATCGTTACCATTCTCCAGTAGGATCATTCCATGAGAGGCATTGTCA 1497
Query 1496 TGGTCCTGGATTTGATAGGCCACCTGGTCCTGGATTTGACAGGCCACCTTCCCCAATGTC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGGTCCTGGATTTGATAGGCCACCTGGTCCTGGATTTGACAGGCCACCTTCCCCAATGTC 1557
Query 1556 TTGGACCCCGCAGCCGGGAATCGATGGCCATCCCGGTGGTATGGTTCCTCCTGATGTGAA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTGGACCCCGCAGCCGGGAATCGATGGCCATCCCGGTGGTATGGTTCCTCCTGATGTGAA 1617
Query 1616 CCATGGATTTGCTTTGAGAAATGAGCCCATTGGCAGCGAGAATCCAGTAATGACAAGTGC 1675
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1618 CCATGGGTTTGCTTTGAGAAATGAGCCCATTGGCAGCGAGAATCCAGCAATGACAAGCGC 1677
Query 1676 AAATGTGGAGATTGTGATTCCTCAAGCATACTTAGGTCATGTCTATGGTGAGAACTGCAG 1735
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1678 AAATGTGGAGATTGTGATTCCTCAAGCATACTTAGGCCATGTCTATGGTGAGAACTGCAG 1737
Query 1736 TAACCTGAATTACATCAAACAGGTATCAGGAGCGAATGTGGTTGTGCATGATCCAAAGGC 1795
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1738 TAACCTGAATTACATCAAGCAGGTATCAGGAGCAAATGTGGTTGTGCATGATCCAAAGGC 1797
Query 1796 AGGGACTACAGAAGGACTGGTGGTTGTCTCAGGCACATCGGATCAAGCTCACTTTGCTCA 1855
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1798 AGGGACTACAGAAGGACTGGTGGTTGTCTCGGGTACATCGGATCAAGCTCACTTTGCTCA 1857
Query 1856 AAGCCTTCTTCATGCTTTTATTCTCTGTGGTCAATCTTGATTGCTCTCTTT-TCAAAGTG 1914
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||
Sbjct 1858 GAGCCTTCTTCATGCTTTTATTCTCTGTGGTCAATCTTGATTGCTCT-TATGTCAAATTG 1916
Query 1915 TGTACAATTTTAACATGATAGT 1936
| || |||||||||||||||||
Sbjct 1917 TTTAAAATTTTAACATGATAGT 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5