BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51590.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474272 jgi|Araly1|474272|fgenesh2_kg.1__4226__AT1G51590.1 2957 0.0
Ahg479633 jgi|Araly1|479633|fgenesh2_kg.3__2334__AT3G21160.1 1705 0.0
Ahg895816 jgi|Araly1|895816|Al_scaffold_0006_3812 250 3e-65
> Ahg474272 jgi|Araly1|474272|fgenesh2_kg.1__4226__AT1G51590.1
Length=1958
Score = 2957 bits (1601), Expect = 0.0
Identities = 1811/1904 (95%), Gaps = 48/1904 (3%)
Strand=Plus/Plus
Query 18 ACTAAAATCGGATCTATAACTTTTGTTCTTTGAGAG--A-CTTA---------TTTCTCT 65
||| ||||||||||||||||||| |||||||||||| | |||| |||||||
Sbjct 1 ACTTAAATCGGATCTATAACTTTGGTTCTTTGAGAGAAAGCTTATCTCTTTCTTTTCTCT 60
Query 66 CTCGGTTTCTTACTCTTTTCGGATC-AGAAATTTAAAAGCTTTTAACTTTTGTCTTGCTC 124
||| ||||||||||| ||||||||| ||||||||||||| | | | || |||
Sbjct 61 CTCTGTTTCTTACTC-TTTCGGATCAAGAAATTTAAAAG-------C---T-T-TT-CTC 106
Query 125 TGTTTCATGGACACTGATTTCTCAATTGGTCTCTGTTTTTGTTGAGTGGGTTGAGAAGAG 184
||||||||||| ||||||||||||||||||||||| || || | ||| | | ||
Sbjct 107 TGTTTCATGGAAACTGATTTCTCAATTGGTCTCTG---TT-TT---T--GTT--G-A-AG 153
Query 185 AGATGGCGAGAAGTAGATCGATTAGTGGTTATGGGATATGGAAATATTTGAATCCTGCGT 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 AGATGGCGAGAAGTAGATCGATTAGTGGTTATGGGATATGGAAATATTTGAATCCTGCGT 213
Query 245 ATTATCTTAGAAGACCGAGACGTTTGGCTTTGCTTTTCATTGTCTTCGTCTCTGTTTCTA 304
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 214 ATTATCTTAGAAGACCAAGACGTCTGGCTTTGCTTTTCATTGTCTTCGTCTCTGTTTCTA 273
Query 305 TGCTTGTCTGGGATCGTATTAATCTTGCCCGAGAACATGAGGTTGAAGTTTTTAAGCTAA 364
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 274 TGCTTGTCTGGGATCGTATAAATCTTGCCCGAGAACATGAGGTTGAAGTTTTAAAGTTAA 333
Query 365 ATGAAGAAGTTTCACGGTTGGAGCAGATGTTAGAAGAGCTTAATGGTGGTGTTGGC-A-- 421
||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 334 ATGGAGAAGTTTCACGGTTGGAGCAGATGTTAGAAGAGCTTAA---AGGTGTTGGCGATG 390
Query 422 ATAAGCCTTTGAAGACTCTGAAGGATGCCCCAGAAGATCCAGTTGATAAACAGCGAAGGC 481
||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 391 ATAAGCCTTTGAAGAATCTGAAGGATGTCCCAGAAAATCCAGTTGATGTCCAGCGAAGGC 450
Query 482 AGAAAGTAAAAGAGGCAATGATCCATGCTTGGAGCTCTTATGAAAAGTATGCATGGGGGA 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 451 AGAAAGTAAAAGAGGCAATGATCCATGCTTGGAGCTCTTATGAAAAGTATGCATGGGGAA 510
Query 542 AAGATGAGCTTCAGCCTCGGACAAAAGATGGCACTGATAGCTTTGGTGGCCTTGGAGCAA 601
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 511 AAGATGAGCTTCAGCCTCGAACAAAAGATGGCACTGATAGTTTTGGTGGCCTTGGAGCAA 570
Query 602 CTATGGTAGATTCTTTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTCAAAAAG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CTATGGTAGATTCTTTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTCAAAAAG 630
Query 662 CCAGAGAGTGGGTTGCAAGCTCATTGGATTTCGACAAGGATTATGACGCCAGTATGTTTG 721
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CCAGAGAGTGGGTAGCAAGCTCATTGGATTTCGACAAGGATTATGACGCCAGTATGTTTG 690
Query 722 AGACAACCATAAGAGTTGTAGGCGGACTTCTTAGTGCGTATGATCTTTCTGGGGACAAAA 781
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 691 AGACAACCATAAGAGTTGTAGGCGGACTTCTTAGTGCATATGATCTTTCTGGGGACAAAA 750
Query 782 TGTTCCTTGAAAAGGCTAAGGATATTGCAGACAGATTATTGCCTGCATGGAATACTCCAA 841
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 751 TGTTCCTTGAAAAGGCTAAGGATATTGCAGACAGATTATTGCCTGCATGGAACACTCCAA 810
Query 842 CGGGTATACCTTACAATATTATCAACTTGAGAAATGGAAATGCTCACAATCCTTCATGGG 901
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CGGGTATACCTTACAATATCATCAACTTGAGAAATGGAAATGCTCACAATCCTTCATGGG 870
Query 902 CGGCAGGGGGAGACAGTATTCTCGCAGACTCCGGCACTGAGCAGCTCGAGTTTATTGCCC 961
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 871 CGGCAGGGGGAGACAGTATTCTTGCAGACTCCGGCACTGAGCAGCTCGAGTTTATTGCCC 930
Query 962 TTTCCCAAAGGACAGGGGACCCAAAATATCAGCAGAAGGTAGAGAAGGTTATTACAGAAC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 TTTCCCAAAGGACAGGGGACCCAAAATATCAGCAGAAGGTAGAGAAGGTTATTACAGAAC 990
Query 1022 TGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGATAATGCTA 1050
Query 1082 ATCCATCGTACTCTACCACAACATTTGGTGCCATGGGAGATAGCTTTTATGAGTATTTGC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 ATCCATCGTACTCTACCACAACATTTGGTGCCATGGGAGATAGCTTTTATGAGTATTTGC 1110
Query 1142 TCAAAGTTTGGGTGCAAGGGAACAAAACATCTGCCGTGAAACCCTATAGAGATATGTGGG 1201
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1111 TCAAAGTTTGGGTGCAAGGGAACAAAACATCCGCGGTGAAACCCTATAGAGATATGTGGG 1170
Query 1202 AGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGT 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1171 AGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACAT 1230
Query 1262 ATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGATGGATGAATTGGCGTGCTTTG 1321
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 ATATATGCGAGAAGAACGGAAATAATTTGATTGATAAGATGGATGAATTGGCGTGCTTTG 1290
Query 1322 CTCCTGGAATGTTGGCTTTAGGAGCTTCAGGTTATGGCCCTGATGAAGaaaaaaaGTTTC 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CTCCTGGAATGTTGGCTTTAGGAGCTTCAGGTTATGGCCCTGATGAAGAAAAAAAGTTTC 1350
Query 1382 TTTCACTTGCTGGAGAGCTTGCCTGGACTTGTTATAACTTTTACCAATCGACACCAACGA 1441
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TTTCACTCGCTGGAGAGCTTGCCTGGACTTGTTATAACTTTTACCAATCGACACCAACGA 1410
Query 1442 AACTTGCTGGAGAGAACTATTTCTTCACTGCAGGGCAGGACATGAGTGTTGGCACATCTT 1501
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1411 AACTCGCTGGAGAGAACTATTTCTTCACTGCAGGGCAGGACATGAGTGTTGGAACATCTT 1470
Query 1502 GGAACATTTTAAGACCAGAAACCGTTGAATCACTGTTTTACCTCTGGCGATTAACTGGGA 1561
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1471 GGAACATTTTAAGACCAGAAACCGTTGAATCGCTGTTTTACCTCTGGCGATTAACTGGGA 1530
Query 1562 ACAAGACATATCAAGAGTGGGGATGGAATATATTTC-AAGCATTTGAGAAGAACTCTCGC 1620
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1531 ACAAGACATATCAAGAGTGGGGATGGAATATATT-CGAAGCATTTGAGAAGAACTCTCGC 1589
Query 1621 GTAGAATCTGGATATGTAGGCTTGAAGGATGTCAATACAGGTGCTAAAGACAACAAGATG 1680
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1590 GTAGAATCTGGATATGTAGGCTTGAAGGATGTGAATACAGGTGCTAAAGACAACAAGATG 1649
Query 1681 CAAAGCTTCTTCTTAGCTGAGACTCTTAAGTATCTATATCTTCTCTTTTCGCCTTCATCT 1740
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1650 CAAAGCTTCTTCTTAGCTGAGACTCTTAAGTACCTTTATCTTCTCTTTTCGCCTTCATCG 1709
Query 1741 GTTATTTCATTAGACGAGTGGGTTTTCAACACAGAAGCCCATCCGCTTAAGATTGTGGCA 1800
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1710 GTTATTTCACTAGACGAGTGGGTTTTCAACACAGAAGCTCATCCGCTTAAGATTGTGGCA 1769
Query 1801 CGGAATGATCCGCGTAAGCCAACTATAGCACTACGCCAGAGGAAGTTTGGTCATCAGATT 1860
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1770 CGGAATGATCCGCGTAAGCCAAAAATAGCACTACGCCAGAGGAAGTTTGGTCAGCAGATT 1829
Query 1861 AACGTTTAGTAGACAGTTTCTGCTCAAATGGAATTTGATATTAT 1904
|| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1830 AAGGTTTAGTAGACAGTTTCTGCTAAAATGGAATTTGTTATTAT 1873
Score = 137 bits (74), Expect = 3e-31
Identities = 84/89 (94%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1946 TTAAAGAACAGATGGACAACGTTTTTGCCACAGCAATTTGTAGAGGTACTTTACTGTTTC 2005
||| |||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 1870 TTATAGAACAGAAGGACAAAGTTTTTGCCACAGCAATTAGTAGAAGTACTTTACTGTTTC 1929
Query 2006 CTATGATTTTTGGATTTGTAGAAGAGCtt 2034
|||||||||||||||||||||||||||||
Sbjct 1930 CTATGATTTTTGGATTTGTAGAAGAGCTT 1958
> Ahg479633 jgi|Araly1|479633|fgenesh2_kg.3__2334__AT3G21160.1
Length=2062
Score = 1705 bits (923), Expect = 0.0
Identities = 1402/1631 (86%), Gaps = 42/1631 (3%)
Strand=Plus/Plus
Query 185 AGATGGCGA-GAAGTAGA-TCGATTAGTGGTTATGGGATATGGAAATATTTGAATCCTGC 242
||||||||| ||| || | | | | | |||| |||||||||||||||| || || |||||
Sbjct 62 AGATGGCGAGGAA-TAAACTTG-TAAATGGTCATGGGATATGGAAATACTTCAACCCTGC 119
Query 243 GTATTATCTTAGAAGACCGAGACGT-TTGGCTTTGCTTTTCATTGTCTTCGTCTCTGTTT 301
|| |||||| ||||||| |||||| || |||||||| ||||| ||||| |||||||||
Sbjct 120 GTTTTATCTCCGAAGACCAAGACGTCTT-GCTTTGCTCATCATTCTCTTCTTCTCTGTTT 178
Query 302 CTATGCTTGTCTGGGATCGT-ATTAATCTTGCCCGAGAAC-ATGAGGTTGAAGTTTTTAA 359
| ||| | || ||||||||| | | |||| |||||| || | || ||||||||| ||
Sbjct 179 CCATGGTGGTTTGGGATCGTCAAT-CTCTTTCCCGAG-ACTACCAGTTTGAAGTTTCCAA 236
Query 360 GCTAAATGAAGAAGTTTCACGGTTGGAGCAGATGTTAGAAGAGCTTAATG-GTGGTGTTG 418
| ||||||||||||||| |||||| |||||||||| |||||| ||| | | | | ||
Sbjct 237 GTTAAATGAAGAAGTTTTGCGGTTGCAGCAGATGTTGGAAGAG-ATAAAGAGCGTTACTG 295
Query 419 -GCAATAAGCCTTTGAAGACTCTGAAGGATGCCCCA-GAAGATCCAGTTGATAAACAGCG 476
| || | || | |||| | ||||||||| || ||||||||||||||| |||||
Sbjct 296 AG-GATGTGTCTGTCAAGAGTTTGAAGGATG-TTCAGGAAGATCCAGTTGATGCTCAGCG 353
Query 477 AAGGCAGAAAGTAAAAGAGGCAATGATCCATGCTTGGAGCTCTTATGAAAAGTATGCATG 536
|| ||||| ||| ||||| |||||||| ||||||||||| || |||||||||||||| |
Sbjct 354 AATGCAGAGAGTTAAAGAAGCAATGATTCATGCTTGGAGTTCATATGAAAAGTATGC-TT 412
Query 537 GGGGA-AAGATGAGCTTCAGCCTCGGACAAAAGATGGCACTGATAGCTTTGGTGGCCTTG 595
||||| |||||||||||||||| | ||||||||||||| ||| |||||||||||||| |
Sbjct 413 GGGGACAAGATGAGCTTCAGCCCCAGACAAAAGATGGCGTTGACAGCTTTGGTGGCCTGG 472
Query 596 GAGCAACTATGGTAGATTCTTTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTC 655
| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GTGCAACTATGATAGATGCATTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTC 532
Query 656 AAAAAGCCAGAGAGTGGGTTGCAAGCTCATTGGATTTCGACAAGGATTATGACGCCAGTA 715
| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 533 AGAAAGCCAGAGAGTGGGTAGCAAGCTCATTAGATTTCGACAAGGATTATGCCGCCAGTA 592
Query 716 TGTTTGAGACAACCATAAGAGTTGTAGGCGGACTTCTTAGTGCGTATGATCTTTCTGGGG 775
|||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct 593 TGTTTGAGACAACCATAAGAGTGGTAGGAGGGCTTCTCAGTGCGTATGATCTTTCTGGGG 652
Query 776 ACAAAATGTTCCTTGAAAAGGCTAAGGATATTGCAGACAGATTATTGCCTGCATGGAATA 835
| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 653 ATAAAATTTTCCTCGAAAAGGCTACGGATATTGCAGACAGATTATTGCCTGCATGGGACA 712
Query 836 CTCCAA-CGGGTATACCTTACAATATTATCAACTTGA-GAAATGGAAATGCTCACAATCC 893
||| || |||||||||| || |||||||||||||||| | | ||||||||||||||||||
Sbjct 713 CTC-AATCGGGTATACCATATAATATTATCAACTTGAAGCA-TGGAAATGCTCACAATCC 770
Query 894 TTCATGGGCGGCAGGGGGAGACAGTATTCTCGCAGACTCCGGCACTGAGCAGCTCGAGTT 953
| ||||||||| |||| |||||||||||| ||||| || || ||||||||||| || ||
Sbjct 771 TACATGGGCGG--GGGG-AGACAGTATTCTTGCAGATTCTGGTACTGAGCAGCTTGAATT 827
Query 954 TATTGCCCTTTCCCAAAGGACAGGGGACCCAAAATATCAGCAGAAGGTAGAGAAGGTTAT 1013
||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 828 TATTGCCCTTTCCGAGAGGACAGGGGACCCAAAATATCAGCAAAAGGTAGAAAAGGTTAT 887
Query 1014 TACAGAACTGAATAAGAACTTTCCTGCTGATGGTTTACTTCCCATCTATATAAATCCGGA 1073
| ||| ||| ||||||||||| |||||||||||| ||||||| || ||||||||||| ||
Sbjct 888 TTCAGTACTAAATAAGAACTTCCCTGCTGATGGTCTACTTCCGATATATATAAATCCCGA 947
Query 1074 TA-ATGCTAATCCATCGTACTCTACCACAACATTTGGTGCCATGGGAGATAGCTTTTATG 1132
|| | ||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 948 TACA-GCTAAGCCATCGTACTCTACCATAACATTTGGTGCCATGGGAGACAGCTTTTACG 1006
Query 1133 AGTATTTGCTCAAAGTTTGGGTGCAAGGGAACAAAACATCTGCCGTGAAACCCTATAGAG 1192
| ||||||||||||||||||||| ||||||||||| || || ||||||| ||||||||
Sbjct 1007 AATATTTGCTCAAAGTTTGGGTGTTTGGGAACAAAACTTCAGCAGTGAAACACTATAGAG 1066
Query 1193 ATATGTGGGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCAT 1252
|||||||||||||||||||||| ||| || |||||||||| | |||||| ||||| || |
Sbjct 1067 ATATGTGGGAGAAATCAATGAATGGTCTGCTAAGCTTGGTTAGGAAATCTACACCGTCGT 1126
Query 1253 CATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAA---GATGGATGAAT 1309
| ||||| ||||| ||||||||||| |||||| || ||| ||||| |||||||||||
Sbjct 1127 CGTTTACATATATCTGTGAGAAGAATGGAAAT--TT-GATCGATAATCAGATGGATGAAT 1183
Query 1310 TGGCGTGCTTTGCTCCTGGAATGTTGGCTTTAGGAGCTTCAGGTTAT-G-GC-CCTGATG 1366
|||| ||||||||||| |||||||||||||||||||| || || ||| | | |||| ||
Sbjct 1184 TGGCATGCTTTGCTCCCGGAATGTTGGCTTTAGGAGCATCTGGGTATAGTGATCCTGCTG 1243
Query 1367 AAGaaaaaaaGTTTCTTTCACTTGCTGGAGAGCTTGCCTGGACTTGTTATAACTTTTACC 1426
||| ||| |||||||| ||||| || | ||||||||| ||||| ||||||||||||||||
Sbjct 1244 AAGGAAAGAAGTTTCTCTCACTCGCCGAAGAGCTTGCATGGACGTGTTATAACTTTTACC 1303
Query 1427 AATCGACACCAACGAAACTTGCTGGAGAGAACTATTTCTTCA-CTGCAGGGCAG-GACAT 1484
||||||||||||| ||||| ||||| ||||| |||||||||| || | ||| || |||||
Sbjct 1304 AATCGACACCAACAAAACTGGCTGGGGAGAATTATTTCTTCAACT-CTGGG-AGTGACAT 1361
Query 1485 GAGTGTTGGCACATCTTGGAACATTTTAAGACCAGAAACCGTTGAATCACTGTTTTACCT 1544
||||||||| || || |||||||| || ||||||||||| || |||||||||||||||||
Sbjct 1362 GAGTGTTGGAACGTCGTGGAACATCTTGAGACCAGAAACTGTCGAATCACTGTTTTACCT 1421
Query 1545 CTGGCGATTAACTGGGAACAAGACATATCAAGAGTGGGGATGGAATATATTTCAAGCATT 1604
|||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1422 CTGGCGGTTAACTGCCAACAAGACATATCAAGAGTGGGGATGGAATATATTTGAAGCATT 1481
Query 1605 TGAGAAGAACTCTCGCGTAGAATCTGGATATGTAGGCTTGAAGGATGTCAATACAGGTGC 1664
|||||||||||| ||| |||| ||||||||||| || ||||||||||| |||||||| |
Sbjct 1482 TGAGAAGAACTCGCGCATAGAGTCTGGATATGTCGGTTTGAAGGATGTTAATACAGGCGT 1541
Query 1665 TAAAGACAACAAGATGCAAAGCTTCTTC-TTAGCTGAGACTCTTAAGTATCTATATCTTC 1723
||| |||||||||||||||||||||||| || |||||||| || |||||||| ||||| |
Sbjct 1542 TAAGGACAACAAGATGCAAAGCTTCTTCCTT-GCTGAGACACTCAAGTATCTCTATCTAC 1600
Query 1724 TCTTTTCGCCTTCATCTGTTATTTCATTAGACGAGTGGGTTTTCAACACAGAAGCCCATC 1783
|||| ||||| || | || ||| | |||||||||||||| |||||||||||||| || |
Sbjct 1601 TCTTCTCGCCCACAACAGTCATTCCCTTAGACGAGTGGGTATTCAACACAGAAGCTCACC 1660
Query 1784 CGCTTAAGATT 1794
| |||||||||
Sbjct 1661 CACTTAAGATT 1671
> Ahg895816 jgi|Araly1|895816|Al_scaffold_0006_3812
Length=279
Score = 250 bits (135), Expect = 3e-65
Identities = 152/160 (95%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 187 ATGGCGAGAAGTAGATCGATTAGTGGTTATGGGATATGGAAATATTTGAATCCTGCGTAT 246
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGCGAGAAGTAGATCGATTAGTGGTTATGGGATATGGAAATATTTGAATCATGCGTAT 60
Query 247 TATCTTAGAAGACCGAGACGTTTGGCTTTGCTTTTCATTGTCTTCGTCTCTGTTTCTATG 306
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATCTTGGAAGACCGAGACGCTTGGCTTTGCTTTTCATTGTCTTCGTCTCTGTTTCTATG 120
Query 307 CTTGT-CTGGGATCGTATTAATCTTGCCCGAGAACATGAG 345
||||| | |||||||||| |||||| |||||||||||||
Sbjct 121 CTTGTTC-GGGATCGTATAAATCTTTTCCGAGAACATGAG 159
Score = 193 bits (104), Expect = 5e-48
Identities = 112/116 (97%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 554 AGCCTCGGACAAAAGATGGCACTGATAGCTTTGGTGGCCTTGGAGCAACTATGGTAGATT 613
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGCCTCAGACAAAAGATGGCACTGATAGCTTTGGTGGCCTTGGAGCAACTATGGTAGATT 217
Query 614 CTTTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTCAAAAAGCCAGAGAG 669
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 218 CTTTAGATACACTCTATATAATGGGTCTGGATGAGCAGTTTCAGAAAGCGAGAGAG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5