BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51620.2
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474276 jgi|Araly1|474276|fgenesh2_kg.1__4230__AT1G51620.1 1644 0.0
> Ahg474276 jgi|Araly1|474276|fgenesh2_kg.1__4230__AT1G51620.1
Length=1325
Score = 1644 bits (890), Expect = 0.0
Identities = 1053/1127 (93%), Gaps = 29/1127 (3%)
Strand=Plus/Plus
Query 128 TTCATTTGC-TGTGATGCAGACGATTCGACTATTGAATATGAACCATATGTGTACATTCC 186
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TTC-TTTGCAGGTGATGCAGACGATTCGACTATTGAATATGAACCATATGTGTACATTCC 262
Query 187 AGCGAATAGTTACTCGTATGCCGAGGTTACGAAAATTACAAACAAGTTTAATAGAGTTCA 246
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 263 AGCGAATAGTTACTCGTATGCCGAGGTTACGAAAATTACAAACAAGTTCAGTAGAGTTCA 322
Query 247 TGGCAAAGGAGGGTTTGGTGTAGTTTATCGTGGAGTTTTAAACAAGCAACAAGTAGCAGT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TGGCAAAGGAGGGTTTGGTGTAGTTTATCGTGGAGTTTTAAACAAGCAACAAGTAGCAGT 382
Query 307 AAAGATGCTAAACCGAGCTTCCATCTAC-A-A---T--A--TT---------GTTCACGA 348
||||||| |||||||||| ||| ||||| | | | | || ||||| ||
Sbjct 383 AAAGATGATAAACCGAGCATCCGTCTACAACATTGTACAGTTTACCAAAGAGGTTCATGA 442
Query 349 CTTTGTAAAAGTTCGTCACAAAAACTTGGTGAGCCTCATTGGATATTGCGATGATGGTGA 408
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 443 CTTTGTAAAAGTTCGTCACAAAAACTTAGTGACCCTCATTGGGTATTGCGATGATGGTGA 502
Query 409 GCACTTGGCCCTAATCTACGAATTCGTGGCAAATGGTGACTTGAATGATCAACTATCTGG 468
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 503 GCACTTGGCCCTAATCTACGAATTCGTGGCAAATGGAGACTTGAATGATCAACTATCTGG 562
Query 469 GAAGTTTGGTAATGTCCCGAGCTGGGAAACCAGGTTGAAAATCATCATAGGAGTAGCACA 528
||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||
Sbjct 563 GAAGTTTGGTAATGTCCTGAGCTGGGACAGCAGGTTGAAAATCATCATTGGAGTAGCACA 622
Query 529 AGGTCTGGAGTATTTGCATAGCGAGTTGCGAATCCTTCACCGATATGTTAAGCCGACAAA 588
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 623 AGGTCTGGAGTATTTGCATAGCGAGTTACGAATCCTTCACAGATATGTTAAGCCGACAAA 682
Query 589 TATCCTACTAGGCGAAAACTTTGAAGCGAAACTGGCTGATTTCGGGCTGTCTAGATCCTC 648
||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 683 TATCCTACTAGACGAAAACTTTGAAGCGAAATTGGCTGATTTCGGATTGTCTAGATCCTC 742
Query 649 TCCAACCAACCCTGACATACAAGCGTCAAATAAGATTTATGTCAAGCCTGGAAGAGATCC 708
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 743 CCCAACCAACCCTGACACAGAGGCGTCAAATAAGATTTATGTCAAGCCTGGAAGAGATCC 802
Query 709 ATATCTGC-ATCACCAATACTTCAACTCGAACCGGTTAAACCAAACGAGCGACATTTATA 767
|||||| | || |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 803 ATATCT-CGATGACCAATACTTCAACTCGAACTGGTTAACCCAAACGAGCGACATTTATA 861
Query 768 GCTTTGGCATTGTTATGTTGGAGATGATAACCAACCAGCCTGTAGTTGACAACAAGCGTG 827
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
Sbjct 862 GCTTTGGCATTGTTATGTTGGAGATGATAACCAATCAGCCTGTGGTTGACAACAACCGCG 921
Query 828 AGAGTCCTCACATTTCAAAGTGGGTCGATTTAAAGGTCGCGAAAGGCGATACTCTAGAGA 887
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 922 AGAGTCCTCACATTTCAAAATGGGTCGATTTAAAGGTCGCAAAAGGCGATACTCTAGAGA 981
Query 888 TTGTTGATCTCAGGCTAAACAATGACTTTGAGCGC-GACTCGGTCAGGAAAGCTATGGAT 946
||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 982 TTGTTGATCCCAGGCTAAACAATGACTTTGAGC-CTAACTCAGTCAGGAAAGCTATGGAT 1040
Query 947 ATAGCATGCAGTTGTGCAGCTCGTGCTCATAATAGGCCAAGCATGAGCCAGGTTGTTATA 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 ATAGCATGCAGTTGTGCAGCTCGTGCTCATAATAGGCCAAGCATGAGCCAGGTTGTTATA 1100
Query 1007 GAGCTCAATGAGTGTCTAGCCTTAGAGATGGCTCGAAGTAATGGAAGAACTGGGGAGACA 1066
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1101 GAGCTCAATGAGTGTCTAGCCTTAGAGAAGGCTCGAAGTATTGGAAGAACTGGGGAGATA 1160
Query 1067 ACTCAGACTCAGTGAACAACAGATGACCATGAGTTCAATTATCTCAACATTTTCATTGTA 1126
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1161 ACTCAGACTCAGTGAGCAACA--TGACCATGAGTTCAATTATCTCAACATTTTCATCGTA 1218
Query 1127 TCTTTTCTTACCTCTTTTCTCTCTAAAAGAAGAAAAGACAGATCGTACATTGCATTGTTC 1186
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1219 TCTTTGCTTACCTCTTTTCTCTCTAAAAGAAGAAAAGACAAATCGTACATTGCATTGTTC 1278
Query 1187 ACGCATGGTTGCTGCATTT---CCACTTTATAGCTGTTCATTTTCAG 1230
| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1279 AGGCATGGTTGCTGCATTTTGTCCACTTTATAGCTGTTCATTTTCAG 1325
Score = 231 bits (125), Expect = 7e-60
Identities = 135/140 (96%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1 GAAAAATTCTGCTGCTCTTTTGTATTTTGTGGCCATGGTGTGTATTGGTGTTTCTAGGAA 60
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 1 GAAAAATTCTGCTGCTCTTTTGTATTTTATGGCGATGGTGTGTATTGGTGTTTCTAAGAA 60
Query 61 ACAGATAAACCAGTTTGCATTCTAGGCGATGACAGAAGCGACAGGCCTGAGGCGTTTCTT 120
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 61 ACAGATAAACCAGTTTGCATTGTAGGCGATGACGGAAGCGACAGGCCTGAGGCGTTTCTT 120
Query 121 TTCTAAGTTCATTTGCTGTG 140
||||||||||||||||||||
Sbjct 121 TTCTAAGTTCATTTGCTGTG 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5