BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51630.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923651 jgi|Araly1|923651|scaffold_104932.1 2200 0.0
Ahg479639 jgi|Araly1|479639|fgenesh2_kg.3__2340__AT3G21190.1 1140 0.0
> Ahg923651 jgi|Araly1|923651|scaffold_104932.1
Length=1341
Score = 2200 bits (1191), Expect = 0.0
Identities = 1290/1339 (96%), Gaps = 2/1339 (0%)
Strand=Plus/Plus
Query 195 aagaagaagaagaaggagaTGGGTGTGGATTTGAGGCAAGTGGTGGCTGGAATACTCACC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 4 AAGAAGAAGAAGAAGGAGATGGGTGTGGATTTGAGGCAAGTGGTGGCTGGAATTCTGACC 63
Query 255 ATTACCATGTTTGTGATGCTTGGACAAATGCTTCATAGAGATTACTTTGATGCTGTTCAG 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ATTACCATGTTTGTGATGCTTGGACAAATGCTTCATAGAGATTACTTTGATGCTGTTCAG 123
Query 315 GAGAAAGTTCAAGGAGATGCACATGATATTGAATTCCATGGATCAAAAGTAGCTGTTGAA 374
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 124 GAGAAAGTTCAAGGAGATGCACATGATATTGAATTCCAGGGATCAAGAGTAGCTGTTGAA 183
Query 375 GATGGACTTGTTAGAGCCTTTG-AGGCTGGGACTAAAGGGCCTTGGATGGAAGATAGTCA 433
|||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||| ||
Sbjct 184 GATGGACTTGTTAGAGCCTTTGAAGG-TGGGAATAAAGGTCCTTGGATGGAAGATAGCCA 242
Query 434 TGAACTCAAACCTTGTTGGTCAATTTCTCAATCTGATGAAGCGGTATCGTCAAAGGGTTA 493
|| ||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 243 TGGACTTAAACCTTGTTGGTCTATATCTCAATCTGATGAAGCGGTATCGTCGAAGGGTTA 302
Query 494 CGTTACATTCTCCTTAACAAATGGTCCTGAATACCATGTCTCTCAGATTACTGATGCCGT 553
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 303 TGTTACATTCTCCTTAACGAATGGTCCTGAATACCATGTTTCTCAGATTACGGATGCCGT 362
Query 554 GATGGTGGCGAAGCATCTTGGAGCAACTCTTGTGCTTCCTGACATTAGAGGAAGCAAACC 613
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 363 TATGGTGGCGAAGCATCTTGGAGCAACTCTTGTGCTTCCAGACATTAGAGGAAGCAAACC 422
Query 614 TGGTGATGAAATGAAATTTGAAGATATCTATGATGTGGATAAACTCATTAAAACCTTGGA 673
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 423 TGGTGATGAAATGAACTTTGAAGATATCTATGATGTGGATAAACTCATTAAAAGCTTGGA 482
Query 674 AAGTGTCGTCAAAGTTGTAAGAAAATTGCCGAGCCACGTATCTCTAAGAGATATTGCCAT 733
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 483 AAGTGTCGTCAAAGTTGTAAGGAAATTGCCGAGCCATGTATCTCTAAGAGATATCGCCAT 542
Query 734 TGTCAAAGTTCCTACCCGAGTTGCAGAAGATTACATCAAGGAACATATTGATCCCATCTT 793
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 543 TGTTAAGGTTCCTACCCGAGTTGCAGAAGATTACATCAAGGAACATATTGACCCCATCTT 602
Query 794 CAAATCAAAAGGGAACATAAGGGTTACAACCTATTTCCCTTCTGTGAATTTGAGGAAATC 853
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 603 CAAATCAAAAGGGAATATAAGAGTTACAACCTATTTCCCTTCTGTGAATTTGAGGAAATC 662
Query 854 TTCGCAGGGTGCTGAAACCGACCCTGTCTCTTGTTTGGCAATGTTTGGTTCCTTGGAATT 913
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 TTCGCAGGGTGCTGAAACCGACCCTGTCTCTTGTTTGGCAATGTTTGGCTCCTTGGAATT 722
Query 914 GCAACCTGCAGTGAATGAATTGGTTGAGTCGATGATTCAGCGGTTGAAGACACATAGCAA 973
||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 723 GCAACAGGGAGTGAATGAATTGGTTGAATCGATGATTCAGCGGTTGAAGACACATAGCAA 782
Query 974 GAAATCCGGTGGCCGTTTCATAGCCATAGACTTGAGGGTTGAGATACTTGAAAAGAAAAA 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GAAATCCGGTGGCCGTTTCATAGCCATAGACTTGAGGGTTGAGATACTTGAAAAGAAAAA 842
Query 1034 CTGCCATGAAACAGGTGCAGTGGGATCCAAAACATGTTACAACGCACAAGAGATTGCATT 1093
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TTGCCATGAAACAGGTGCTGTGGGATCCAAAACATGTTACAACGCACAAGAGATTGCATT 902
Query 1094 GTTCTTGAGGAAGCTTGGATTTGACAGCGATACAACTATATATCTGACTCAGCCAAGATG 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GTTCTTGAGGAAGCTTGGATTTGACAGCGATACAACTATATATCTGACTCAGCCAAGATG 962
Query 1154 GGAGAGCAGCCTCAATATTCTTAAGGACATTTTCCCAAAAACATATACTAAGGAGGCGAT 1213
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 963 GGAGAGCAGCCTCAATATTCTTAAGGACATTTTCCCGAAAACATATACTAAGGAGGCGAT 1022
Query 1214 AATGCCGTCAGATAAGAAAACGAAGTACCTTGAATTAGAGAATTCTGAATATGAAAATGT 1273
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1023 AATGCCGTCAGATAAGAAATCGAAGTACCTTGAATTAGAAAATTCTGAATATGAAAATGT 1082
Query 1274 TATTGACTTCTACATAAGTTCAAGGAGTGATGTATTTGTACCAGCCATTCCCGGTCTGTT 1333
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1083 TATTGACTTCTACATAAGTTCAAGGAGTGATGTATTTGTGCCAGCCATTCCCGGTCTGTT 1142
Query 1334 TTACGCCAATACAGTTGGAAAAAGGATAGCTTTAGGCAAGCCTCAAGTTCTCGTTCCAGC 1393
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TTACGCCAACACAGTTGGAAAAAGGATAGCTTTAGGCAAGCCTCAAGTTCTCGTTCCAGC 1202
Query 1394 CGAGATCTCAGGGACATCCGGTCTTCCCGCTAATTACATATCTCCCTATATATCAAAGAA 1453
|||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||||||
Sbjct 1203 CGAGATCTCAGGGACATCCGGTGTTCCCACTAATTACATCTCTCCCTACATATCAAAGAA 1262
Query 1454 GAACCACTTGGCGTATTCATGCTTTTGCTGAACTTCTCTGGTGTAACTTTTGAGGGAAAT 1513
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1263 GAACCACTTGGCGTATTCATGCTTTTGCTGAACTTCTCTGATGTAACTTATGAGGGAAAT 1322
Query 1514 ATTTTGCTAAAGTGATCTT 1532
||||||||||||||||||
Sbjct 1323 GTTTTGCTAAAGTGATCTT 1341
> Ahg479639 jgi|Araly1|479639|fgenesh2_kg.3__2340__AT3G21190.1
Length=1668
Score = 1140 bits (617), Expect = 0.0
Identities = 1080/1300 (83%), Gaps = 45/1300 (3%)
Strand=Plus/Plus
Query 213 ATGGGTGTGGATTTGAGGCAAGTGGTGGCTGGAATACTCACCATTACCATGTTTGTGATG 272
|||||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 120 ATGGGTGTTGATTTGAGGCAAGTAGTGGCTGGTATTCTCACCATTACCATGTTTGTTATG 179
Query 273 CTTGGACAAATGCTTCATAGAGATTACTTTGATGCTGTTCAGGAGAAAGTTCAAGGAGAT 332
|||||||| |||||||||||||||||||||||| || |||||||||||| ||| ||||||
Sbjct 180 CTTGGACAGATGCTTCATAGAGATTACTTTGATTCTCTTCAGGAGAAAGCTCAGGGAGAT 239
Query 333 GCACATGATATTGAATTCCATGGATCAAAAGTAGCTGTTG-AAGATGGACTTGTTAGAGC 391
||||| ||||||||||| | ||||| ||||| ||| || ||||||| ||||| || |
Sbjct 240 GCACAAGATATTGAATTTGAAGGATCTAAAGTCTCTG-TGAAAGATGGTCTTGTCGGAAC 298
Query 392 CTTTG-AGGCTGGGACTAAAGGG-CCTTGGATGGAAGATAGTCA-TGAACTCAAACCTTG 448
| ||| |||| | | ||||| | ||||||||| |||| || ||| || || |||||
Sbjct 299 CGTTGAAGGC----AGT-AAGGGACTTTGGATGGAGGATA-ACACTGATCTTAATCCTTG 352
Query 449 TTGGTC-A-ATTTCTCAATCTGATGAAGCGGTATCGTC-AAAGGGTTACGTTACATTCTC 505
|||| | | ||| || ||| |||||||||||||| || |||||| || |||||||||||
Sbjct 353 TTGGCCAACATTACT--ATCAGATGAAGCGGTATCATCGAAAGGG-TATGTTACATTCTC 409
Query 506 -CTTAACAAATGGTCCTGAATACCATGTCTCTCAGATTACTGATGCCGTGATGGTGGCGA 564
| |||| ||||||||||| |||||| ||||||||||| ||||||| || |||||||| |
Sbjct 410 AC-TAACCAATGGTCCTGAGTACCATATCTCTCAGATTTCTGATGCTGTAATGGTGGCAA 468
Query 565 AGCATCTTGGAGCAACTCTTGTGCTTCCTGACATTAGAGGAAGCAAACCTGGTGATGAAA 624
||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 469 AGCATCTTGGAGCAACTCTAGTACTTCCTGATATAAGAGGAAGCAAACCTGGTGATGAAA 528
Query 625 TGAAATTTGAAGATATCTATGATGTGGATAAACTCATTAAAACCTTGGAAAGTGTCGTCA 684
| | ||||||||||||||||||||||||||||| ||||| | |||||||| ||| || |
Sbjct 529 GGGATTTTGAAGATATCTATGATGTGGATAAACTAATTAAGAGCTTGGAAAATGTTGTTA 588
Query 685 AAGTTGTAAGAA-AATTGCC-GA-GCCACGTATCTCTAAGAGAT-ATTGCCATTGTCAAA 740
||||||| | || ||||||| || | | || |||||||| || || |||||||| ||
Sbjct 589 AAGTTGTGA-AACAATTGCCTGAAGA-A-GTTTCTCTAAG-GAACATGGCCATTGTGAAG 644
Query 741 GTTCCTACCCGAGTTGCAGAAGATTACATCAAGGAACATATTGATCCCATCTTCAAATCA 800
|| |||||| ||||| ||||||||||||| ||||| || ||||||||||| || |||||
Sbjct 645 GTCCCTACCAGAGTTACAGAAGATTACATTAAGGAGCACATTGATCCCATTTTTAAATCG 704
Query 801 AAAGGGAACATAAGGGTTACAACCTATTTCCCTTCTGTGAATTTGAGGAAATCTTCGCAG 860
||||| ||||| | || || | || ||||||||||| || ||||||||||| || ||
Sbjct 705 AAAGGAAACATTCGAGTCGCATCATACTTCCCTTCTGTAAACTTGAGGAAATCCTCACAA 764
Query 861 GGTG-CTGAAACCGACCCTGTCTCTTGTTTGGCAATGTTTGGTTCCTTGGAATTGCAACC 919
| || | ||||| || ||||| | ||||| ||||||||||| || ||||| |||||||
Sbjct 765 GATGGC-GAAACTGATCCTGTAGCATGTTTAGCAATGTTTGGGTCATTGGAGCTGCAACC 823
Query 920 TGCAGTGAATGAATTGGTTGAGTCGATGATTCAGCGGTTGAAGACACATAGCAAGAAATC 979
| |||||||| | ||| ||| || ||| || ||||||||| ||| |||||| ||||||
Sbjct 824 CGAAGTGAATGCAGTGGCTGAATCAATGGTTGAGCGGTTGAGGACTCATAGCCGGAAATC 883
Query 980 CGGTGGCCGTTTCATAGCCA-TAGAC-TTGAGGGTTGAGATACTTGAAAAGAAAAACTGC 1037
||||| ||||||||||| | ||||| || || | || |||||||| |||||||| ||
Sbjct 884 AGGTGGGCGTTTCATAGC-AGTAGACCTT-AGAATCGACATACTTGAGAAGAAAAATTGT 941
Query 1038 CATGAA-ACAGGTGCAGT-GGGATCCAAAACATGTTACAACGCACAAGAGATTGCATTGT 1095
||| | || |||| ||| ||| ||||| ||||||||||| || ||||||||||| ||||
Sbjct 942 CAT-ACCACTGGTGTAGTAGGG-TCCAAGACATGTTACAATGCGCAAGAGATTGCTTTGT 999
Query 1096 TCTTGAGGAAGCTTGGATTTGACAGCGATACAACTATATATCTGACTCAGCCAAGATGGG 1155
|||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||
Sbjct 1000 TCTTGAGGAAACTTGGATTTGCCAGCGACACAACTATCTATCTGACTCAGCCAAGATGGG 1059
Query 1156 AGAGCAGCCTCAATATTCTTAAGGACATTTTCCCAAAAACATAT-ACTAAGGAGGCGATA 1214
| || ||||||||||| |||||||| || ||||| ||||||| | || |||||||| |||
Sbjct 1060 ACAGTAGCCTCAATATCCTTAAGGATATCTTCCCGAAAACAT-TCACAAAGGAGGCAATA 1118
Query 1215 ATGCCGTCA-GATAAGAAAACGAAGTACCTTGAATTAGAGAATTCTGAATATGAAAATGT 1273
|||||| || | ||||| | ||||||||||||||| ||||| |||||| || ||||||||
Sbjct 1119 ATGCCGGCAAG-TAAGAGATCGAAGTACCTTGAATCAGAGAGTTCTGAGTACGAAAATGT 1177
Query 1274 TATTGACTTCTACATAAGTTCAAGGAGTGATGTATTTGTACCAGCCAT-TCCCGGTCTGT 1332
||| |||||||| ||||| ||||| || ||||| ||||| |||||||| ||| |||||||
Sbjct 1178 TATCGACTTCTATATAAGCTCAAGAAGCGATGTCTTTGTTCCAGCCATATCC-GGTCTGT 1236
Query 1333 TTTACGCCAATACAGTTGGAAAAAGGATAGCTTTAGGCAAGCCTCAAGTTCTCGTTCCAG 1392
||||||| || || ||||| ||||||||||||||||| ||||||||||| || |||||||
Sbjct 1237 TTTACGCAAACACCGTTGGCAAAAGGATAGCTTTAGGTAAGCCTCAAGTGCTAGTTCCAG 1296
Query 1393 CCGAGATCTCAGGGACATCCGGTCTTCCCGCTA-ATTACATATCTCCCTATATATCAAAG 1451
| || ||||||| || ||| || | | | | | ||| ||| ||||| || || ||||||
Sbjct 1297 CAGAAATCTCAGAGATATCTGGCCGTGCTAC-AGATTTCATCTCTCCGTACATTTCAAAG 1355
Query 1452 AAGAACCACTTGGCGTATTCATGCTTTTGCTGAACTTCTC 1491
||||| |||||||| |||||||||||||||||| ||||||
Sbjct 1356 AAGAATCACTTGGCTTATTCATGCTTTTGCTGACCTTCTC 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5