BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51640.1
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474278 jgi|Araly1|474278|fgenesh2_kg.1__4232__AT1G51640.1 3138 0.0
> Ahg474278 jgi|Araly1|474278|fgenesh2_kg.1__4232__AT1G51640.1
Length=2052
Score = 3138 bits (1699), Expect = 0.0
Identities = 1943/2061 (94%), Gaps = 16/2061 (1%)
Strand=Plus/Plus
Query 1 GCAAAACAATGGCTGAATCAAAGAGACTTGAGAGGCTTAAAGCAATGAGAAGTTTATTGA 60
||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GCAAAGCAATGGCTGAAGCAAAGAGACTTGAGAGACTTAAAGCAATGAGAAGTTTATTGA 60
Query 61 AGAGTGAGATGGAGAAATCTGAAACCTTTTCATTGGTTCTTAACAAGACTGGATCCAAGA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGTGAGATGGAGAAATCAGAAACCTTTTCATTGGTTCTTAACAAGACTGGATCCAAGA 120
Query 121 TTGAAGAGATCAACCATAAGTTGTCGTCTTTAGAAGCTGATCTTAAAGTTGAGAGATGGA 180
|| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TTAAAGAGATCAACCACAAGTTGTTGTCTTTAGAAGCTGATCTTAAAGTTGAGAGATGGA 180
Query 181 AGGCTTCTCCTTTCTCTGATCATATCCGTCACACCATTGCTCCAATATCCGCTGTCCTGA 240
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 AGGCTTCTCCTTTCTTTGATCATATCCGTCACACCATTGCTCCGATATCCGCTGTTTTGA 240
Query 241 GAGTCTTTGCTACGGTTCAAGAGCTTGAGAGATCTCTCGTGTCCTCTGATGGAGTCCTTG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGTCTTTTCTACGGTTCAAGAGCTTGAGAGATCTCTCGTGTCCTCTGATGGAGTCCTTG 300
Query 301 GTTATGTTTCGGATGTTAAACGTCTTGGAGAAGCGATGAAGCTTCTCTCCAGTAGCTGTG 360
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GTTACGTTTCAGATGTTAAACGTCTTGGTGAAGCGATGAAGCTTCTCTCCAGTAGCTGTG 360
Query 361 TTCTTGCTCTTAACTGGCTAGAAGATACGATCGAGTACCTAACCGAAAAGGGAATGCCTG 420
||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 361 TTCTTGCTCTTAATTGGCTTGAAGATACAATCGAGTTCCTAACCGAAAAGGGAATGCCTG 420
Query 421 AAGATCATCCTTGCGGTTTGCGGTTCAAGACTTCCATAGAGCTTCTCCGGGAATTGCAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGATCATCCTTGCGGTTTGCGGTTCAAGACTTCCATAGAGCTTCTCCGGGAATTGCAAA 480
Query 481 TGACCGAGTCTCGTGCTTATCTCAAAGGAGGTATTCTTTACACAGCGCTGAAGAATCTTG 540
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 481 TGACCGAGCCTCGTGCTTATCTCAAAGGAGGGATTCTTTACACAGCGTTGAAGAATCTTG 540
Query 541 AAACAGAATTCAAGCGGATTCTCCAAGAGAAGCCGGTTTTCTCAGAA-GACAACTTGAGA 599
|||||||||||||||||||||| ||||| ||| |||||| || ||| | |||||||||
Sbjct 541 AAACAGAATTCAAGCGGATTCTAAAAGAGGAGCAGGTTTTGTC-GAAAGTTAACTTGAGA 599
Query 600 AAGTTGCAGGCTATCATCAAGAGATTACATGCTCACACGCGGTT-AACAAGCTGCGTACC 658
|||||||||||||||||||||||||||||||||||||||||||| || || ||| ||| |
Sbjct 600 AAGTTGCAGGCTATCATCAAGAGATTACATGCTCACACGCGGTTGAAAAA-CTGTGTATC 658
Query 659 AGTTTACATCAAAGTCCGCACCAA-GGTCATTCAGAAACGGTTTGAGATTAGTTATCTGG 717
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 659 TGTTTACATCAAAGTCCGCAC-AACGGTCATTCAGAAACGGTTTGAGATTGGTTATCTGG 717
Query 718 AGAAAACAATCACAGAAGCTGATAATGTACATGATATTGAAGGCGATATAGATCAATGGA 777
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 AGAAAACAATCACAGAAGCTGATAATGTGCATGATATTGAAGGCGATATAGATCAATGGA 777
Query 778 GATTGCATATGGAGATAGCTGTGAAAGAGATATACGAGTTTGAGAGTAAGCTCTGCTATG 837
||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 778 GATCGCATATGGAGATAGCTGTGAGAGAGACATATGAGTTTGAGAGTAAGCTCTGCTATG 837
Query 838 ACGTATTTGAAGATATTGGAGAAGATGTTCCCTTGCGTTGCTTTGGAGAAATAGCTTCAA 897
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 ACGTATTTGAAGATGTTGGAGAAGATGTTCCCTCGCGTTGCTTTGGAGAAATAGCTTCAA 897
Query 898 ATTCAGTGATCCTTCAGCTTCTCAGATTTGGATCAAGAATCAGCAAATGCAAGAGAGAGC 957
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 898 ATTCAGTAATCCTTCAGCTTCTCAGATTTGGATCAAGAATCAGCAAATGCAAGAAAGATC 957
Query 958 CACCAAAGCTGA-TCAAGCTCTTAGATTGTTTCTCTACAATGGACAACTTTCGGATAGAG 1016
|||||||||| | | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 CACCAAAGCT-ACTAAAGCTCTTAGATTGTTTCTCTACAATGGACAACATTCGGATAGAG 1016
Query 1017 TTTAACAGGCTATTTCGAGGGGAACAATGTTCAGAGATACGCAGAGTTACACGGGAGCTA 1076
|||||| ||||||||| ||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1017 TTTAACCGGCTATTTCAAGGGGAACAGTGTTCAGAGATACGCAGAGTTACCCGAGAGCTA 1076
Query 1077 ATCAGCAATCTCGTTAAGGGTGTCTCCGAGATCTTCTGGGAGTTACCTTGTCAGGTAGAG 1136
|| | |||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 1077 ATTAACAATCTTGTTAAGGGTGTCTGCGAAATCTTCTGGGAGTTACCTTGTCAGGTGGAG 1136
Query 1137 CTACAGAGACCAAATTGCCCACCTCTTGATGGAGGTGTCCCAAAGCTTGTAAGCGTTGTG 1196
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1137 CTACAGAGACCAAATTGCCCACCTCTTGATGGAGGTGTCCCGAGGCTTGTTAGCGTTGTC 1196
Query 1197 ACTGAGTACTGCAACAAGCTACTGGGGAACAACAACAAGCCAATCTTGTCGAAGGTCCTA 1256
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1197 ACTGAGTATTGCAACAAGCTACTGGGGAACAACAACAAGCCAACCTTGTCGAAGATTCTC 1256
Query 1257 GAAATTGATTTGGGATGGAAGAACGCAAAGTATCAAGAAGAGCTTCTCACAGGTCACATC 1316
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GAGATTGATTTGGGATGGAAAAACGCAAAGTATCAAGAAGAGCTTCTCACAGGTCACATC 1316
Query 1317 TACAACATACTGAGAGAGATTGCTTTGAACTTGGACGCATGGTCAAGTTCCAACAAAGAA 1376
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1317 TACAACATACTGAGAGAGATTGCTTTGAACTTGGACGCGTGGTCGAGTTCCAACAAAGAA 1376
Query 1377 ACCGCTCTTTCTTGCATCTTTATGATGAACAATCACTCCCATTTCTGCGGCTTGAGAGAG 1436
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1377 ACCGCTCTTTCTTGCATCTTTATGATGAACAATCACTCCCATTTCTGCGGTTTGAGAGAG 1436
Query 1437 ACTTATCTCGGGGAAATGATGGGAGAGTCTTGGTTAAACGCACACGAGCAGTACAGAGAC 1496
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1437 ACTCATCTCGGGGAAATGATGGGAGAGTCTTGGTTAAACGCACATGAGCAGTACAGAGAC 1496
Query 1497 TATTACGCTGCACTTTATGTCAAAGAAAGCTGGGGACATCTCTTGTCTCTACTCAC-A-- 1553
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1497 TATTACGCTGCACTATATGTCAAAGAAAGCTGGGGAAATCTCTTGTCTCTACTCACCACC 1556
Query 1554 AACAAAGCTCAAACCACTtcatcatcatcatcatcatcatcagaatcatcTCCTGTGAAA 1613
|||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1557 AACAAACCCCAAACCACTTC-T--TCATCATCATCATCATCAGAATCATCTCCTGTGAAA 1613
Query 1614 GGAAAACGAGCCCGTGAGTCCATTAAGCGAACATTACAAGCGTTTTGTAAAGGATTTGAT 1673
||||||||||||||||||| || || |||||||||||||| |||| |||||| ||||||
Sbjct 1614 AGAAAACGAGCCCGTGAGTCGATCAAACGAACATTACAAGCATTTTCTAAAGGCTTTGAT 1673
Query 1674 GAGATATACACAAAGCAATCAAATTGGGTTGTTGAGGATGACAAGTTGGTATGGAAGATA 1733
|||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1674 GAGATATACACAAAGCAAGCAAATTGGGTTGTTGAGGACGACAAGTTGGCATGGAAGATA 1733
Query 1734 TGTCAAGCAATGGTGAAAACAGTTGTGCCAAGATACAAGAGTTACCTACAAAGCTACATA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1734 TGTCAAGCAATGGTGAAAACAGTTGTGCCAAGATACAAGAGTTACCTACAAAGTTACATA 1793
Query 1794 AAGCTTCTAGTAGAAGAAGATCCTACGAGTGATAGTAAGCATTTATATTATACTCCAAAG 1853
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1794 AAGCTTCTAGTCGAAGAAGATCCTACAAGTGATAGTAAGCATTTATATTATAATCCAAAG 1853
Query 1854 GGTTTagagatgaagctgaagacaatgtttcagaagaaagaagaaacagagaagagagac 1913
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1854 GGTTTAGAGATGAAACTGAAGACAATGTTTCAGAAGAAAGAAGAGACAGAGAAGAGAGAC 1913
Query 1914 aaagaTTCTCACTTTGTGAACAAAGTGATGGATTTGGAGATTACTCAGAATTCTCGCTCG 1973
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1914 AAAGAGTCTCACTTTGTGAACAAAGTGATGGATTTGGAGATTACTCAGAATTCTCACTTG 1973
Query 1974 ACATTAGAAGCTATATGATAATACTTAGACAAGATCACGAAACTAGACACTCGTTTCTTA 2033
|||||||||||||||||||||||||||||||||||||| ||| || | | ||||||||
Sbjct 1974 ACATTAGAAGCTATATGATAATACTTAGACAAGATCACTAAATTACAG-C-CGTTTCTTG 2031
Query 2034 GTGAAGCTTAGCCTAACATAG 2054
||||||||||||| |||||||
Sbjct 2032 GTGAAGCTTAGCCAAACATAG 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78694446170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5