BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G51650.1

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474279 jgi|Araly1|474279|fgenesh2_kg.1__4233__AT1G51650.1         592    1e-168


> Ahg474279 jgi|Araly1|474279|fgenesh2_kg.1__4233__AT1G51650.1
Length=474

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 387/419 (92%), Gaps = 5/419 (1%)
 Strand=Plus/Plus

Query  56   AAGATCGGAGATGGCATCGAATGCGGCGGTTCCGTTCTGGAGAGCGGCGGGGATGACATA  115
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  1    AAGATCGGAGATGGCATCGAATGCGGCGGTTCCGTTTTGGAGAGCGGCGGGGATGACTTA  60

Query  116  TATATCGTATTCAAACATCTGTGCGAATATCGTGAGGAACTGTCTCAAGGAGCCACACAA  175
            ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct  61   TATATCGTATTCAAACATCTGTGCGAATATCGTGAGGAATTGCCTCAAGGAGCCACACAA  120

Query  176  AGCTGAAGCTCTTACTCGCGAGAAGGTTCACTTCTCTCTCTCCAAATGGGCTGATGGAAA  235
            ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  AGCTGAAGCCCTAACTCGCGAGAAGGTTCACTTCTCTCTTTCCAAATGGGCTGATGGAAA  180

Query  236  GCCCCAGAAACCTGTTTTGCGGTCAGACACACCTGAAGTTTGA-AGTCAACTTTGAGCTT  294
            ||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||| 
Sbjct  181  GCCCCAGAAACCTGTTTTGCGGTCAGATACACCTGAAGTTTGAGA-TCAAGTTTGAGCTA  239

Query  295  ATGTTCTTAAGGGATTCAAAAGTAACTGAGTTACCAAGATTTGTTTTCTTTTTATTGTCA  354
            |||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct  240  ATGTGCCTAAGGGATTCAAAAGTAACTGTGTTACCAAGATTTGTTATCTTTTTATTGTCA  299

Query  355  ACAATGGAGCTTGAGTGAAAAACTCATTTCCGATCATAATAATGACACACTGAGTCTTGT  414
             ||||||| ||||||||| |||||||||||| ||||||||||||||||| |||| ||| |
Sbjct  300  GCAATGGACCTTGAGTGAGAAACTCATTTCCAATCATAATAATGACACATTGAGGCTTAT  359

Query  415  GTATCTCTTTTCTTCTTTTGC-T--ATTCTGTTTCACTTTTTGTATGCGAACAATGaaa  470
            |||||| ||||||| |||||| |  ||| ||||||||||||||||||| || ||| |||
Sbjct  360  GTATCTGTTTTCTTGTTTTGCATCTATTATGTTTCACTTTTTGTATGCAAATAATCAAA  418


 Score = 87.9 bits (47),  Expect = 7e-17
 Identities = 53/56 (95%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  511  TTGATTGTTACAGAACAGTGAGAATAGCATAAAACTAAGCACATACGTGGAGAATC  566
            |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||
Sbjct  419  TTGATTGTTACAGAACAGTGAGAATAGCATAAAATTAAGCACATGTGTGGAGAATC  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20680329238


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5