BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51660.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474280 jgi|Araly1|474280|fgenesh2_kg.1__4234__AT1G51660.1 2056 0.0
Ahg479642 jgi|Araly1|479642|fgenesh2_kg.3__2343__AT3G21220.1 833 0.0
> Ahg474280 jgi|Araly1|474280|fgenesh2_kg.1__4234__AT1G51660.1
Length=1527
Score = 2056 bits (1113), Expect = 0.0
Identities = 1290/1371 (94%), Gaps = 29/1371 (2%)
Strand=Plus/Plus
Query 249 AGCGATGAGACCGATTCAATCGCCTCCAGGAGTTTCCGTTCCGGTGAAAAGCCGTCCCCG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 177 AGCGATGAGACCGATTCAATCGCCTCCAGGAGTTTCCGTTCCGGTGAAAAGCCGTCCTCG 236
Query 309 TCGCCGTCCTGATCTTACCTTACCGCTTCCTCAACGCGATGTTTCTCTCGCTGTACCTCT 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCGCCGTCCTGATCTTACCTTACCGCTTCCTCAACGCGATGTTTCTCTCGCTGTACCTCT 296
Query 369 TCCTCTCCCACCTACTTCCGGTGG-T-TCCGGTGGC-TCTAGTGGATCTGC-GCCGTCTT 424
||||||||||||||||||||||| | | || | | ||| |||| | | | | ||||||
Sbjct 297 CCCTCTCCCACCTACTTCCGGTGGATCTGCGCCGTCTTCTGGTGG-T-T-CAG-CGTCTT 352
Query 425 CTGGTGGTTCGGCGTCTTCAACGAACACTAACAGCTCCAT-AGAAGCGAAGAACTATTCG 483
| | || || || |||||||||||||||||| | |||| ||||||||||||||
Sbjct 353 C----AGCTC--CG---TCGACGAACACTAACAGCTCC-TCAGAATCGAAGAACTATTCG 402
Query 484 GATTTAGTGAGAGGTAACCGTATCGGAAGCGGAGCAGGTGGAACGGTATACAAAGTGATT 543
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||
Sbjct 403 GATTTAGTGAGAGGTAACCGGATCGGAAGCGGAGCTGGTGGAACGGTTTACAAAGTGGTT 462
Query 544 CACCGTCCGAGTTCTCGTCTATATGCACTTAAGGTGATATACGGTAACCACGAGGAGACT 603
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 463 CACCGTCCGAGTTCTCGTCTATACGCACTCAAGGTGATATACGGTAACCACGAGGAGACA 522
Query 604 GTGAGACGTCAGATCTGTAGAGAGATCGAGATTTTACGAGATGTGAATCATCCAAACGTT 663
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 523 GTGAGACGTCAGATCTGTAGAGAGATCGAGATTTTGCGAGATGTGAATCATCCAAACGTT 582
Query 664 GTGAAATGTCACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GTGAAATGTCACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATG 642
Query 724 GATAAAGGTTCTTTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GATAAAGGTTCTTTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCT 702
Query 784 CGTCAGATTCTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATC 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CGTCAGATTCTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATC 762
Query 844 AAACCATCGAATCTTTTGATAAACTCTGCTAAAAACGTTAAGATTGCTGATTTTGGAGTT 903
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 763 AAACCATCGAATCTTTTGATAAACTCTGCTAAAAACGTTAAGATTGCAGATTTTGGAGTG 822
Query 904 AGTAGGATCTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTAT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGTAGGATCTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTAT 882
Query 964 ATGAGTCCTGAGAGGATTAACACTGATTTGAATCAGGGAAAGTATGATGGTTATGCTGGA 1023
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 883 ATGAGTCCTGAGAGGATTAACACTGATTTGAATCAGGGTTTGTATGATGGTTATGCTGGT 942
Query 1024 GATATTTGGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GATATTTGGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCT 1002
Query 1084 GTGAGTAGACAAGGTGATTGGGCTAGTCTTATGTGTGCCATTTGTATGTCTCAGCCTCCA 1143
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1003 GTGAGTAGACAAGGTGATTGGGCAAGTCTTATGTGTGCCATCTGTATGTCTCAGCCTCCG 1062
Query 1144 GAAGCTCCAGCGACTGCGTCGCCGGAGTTTCGGCATTTTATCTCGTGTTGCTTGCAGAGA 1203
||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1063 GAAGCTCCACCTACCGCGTCGCCGGAGTTCCGGCATTTTATCTCGTGTTGCTTGCAGAGA 1122
Query 1204 GAACCGGGGAAAAGGAGGAGTGCTATGCAGCTATTGCAGCATCCTTTCATATTAAGAGCA 1263
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1123 GAACCGGGGAAAAGGAGAAGTGCGATGCAGCTATTGCAGCATCCTTTCATATTAAGAGCA 1182
Query 1264 AGTCCGAGCCAGAACAGGTCTCCTCAGAATCTACATCAACTCTTGCCTCCTCCTCGTCCT 1323
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AGTCCGAACCAGAACAGGTCTCCTCAGAATCTACATCAACTCTTGCCTCCTCCTCGTCCT 1242
Query 1324 CTGTCCTCGTCTTCTTCTCCAACCACATAGCGTTTTCTCTCTTCTTCCCTTCATCAACTC 1383
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1243 CTGTCCTCGTCTTCTTCTCCAACCACATAGCGTTTTCTCTCCTCTCCCCTTCATCAACTT 1302
Query 1384 ATATTTTTTG-TGTTACTACTGTTCTTGAGTCTGTTGTCCAATTTTTT-GCTAATCATGG 1441
| ||||||| ||||||| | || |||||||| ||||||||||||| |||||||| ||
Sbjct 1303 ACATTTTTTCCTGTTACTGTTCTTGTTGAGTCT-TTGTCCAATTTTTGCGCTAATCAAGG 1361
Query 1442 AGGGTCTCTGAATTTTACATTTATTAGGGAGTAAAAAACTCGAGAGAGGGTTT-TTGGGA 1500
||||||||||||| ||||||| |||| |||||||||||||||||| ||||||| ||||||
Sbjct 1362 AGGGTCTCTGAATCTTACATTAATTAAGGAGTAAAAAACTCGAGAAAGGGTTTATTGGGA 1421
Query 1501 TTATTGTTTTCTAGAAAGGTAAAAGAGAACAATGATAATATTCTTATGCTTATGATGGTG 1560
|||||||||||||||||| |||| ||||||||| | ||| | ||||||||||||||||||
Sbjct 1422 TTATTGTTTTCTAGAAAGATAAA-GAGAACAAT-A-AAT-T-CTTATGCTTATGATGGTG 1476
Query 1561 CATGTATCCCCAATGTAGCTTTGTTGAATTTT-CATAAAAGTTTTTGCCTT 1610
|||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1477 CATGTATCCCCAATGTAGCTTTCTTGAATTTTTCATAAAAGTTTTTGCCTT 1527
Score = 200 bits (108), Expect = 3e-50
Identities = 168/193 (87%), Gaps = 19/193 (10%)
Strand=Plus/Plus
Query 10 TCAGTGTCCTTTCAATTTCTTTCGACGAAACTTCATTTCTCAATTTCTTTTGATTTTGAT 69
||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 1 TCAGTGTCCTTTCAATTTCTTTCGACGAACCTTCATTTCTC-A---------ATTTTGAT 50
Query 70 CGCTTCGAAGAACGAATCAATTTAAGCCTGCCACAAACAAACCCTAGAATACGACAACGC 129
||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||
Sbjct 51 CGCTTCGAAGAACGAATCAATATAAGCCTG-C-C--ACAAACCCTAGAATACGACAACGC 106
Query 130 ACGACGACGAAGAAGTCGAAGAAGACTACTACTATAAA-CGACGAAGATCATTA-CTTCA 187
|||||||||||| ||||||||||| ||||||||||| |||||||||| | || |||||
Sbjct 107 ACGACGACGAAG---TCGAAGAAGACGACTACTATAAAACGACGAAGATAAATAACTTCA 163
Query 188 ATCTTCAATCGAG 200
|||| ||||||||
Sbjct 164 ATCTCCAATCGAG 176
> Ahg479642 jgi|Araly1|479642|fgenesh2_kg.3__2343__AT3G21220.1
Length=1445
Score = 833 bits (451), Expect = 0.0
Identities = 676/782 (86%), Gaps = 25/782 (3%)
Strand=Plus/Plus
Query 496 GGT-AACCGTATCGGAAGCGGAGCAGGTGGAACGGTATACAAAGTGATTCAC-CGTCCGA 553
||| ||||| |||||||||||||| || |||||||| |||||||| || ||| | |||||
Sbjct 360 GGTGAACCGAATCGGAAGCGGAGCCGGAGGAACGGTTTACAAAGTAATCCACAC-TCCGA 418
Query 554 -GTTCTCGT-CTATAT-GCACTTAAGGTGATATACGGTAACCACGAGGAGACTGTGAGAC 610
| || ||| || | | || || || ||||| ||||| |||||||| || || |||||||
Sbjct 419 CG-TCACGTCCT-T-TCGCTCTCAAAGTGATTTACGGAAACCACGAAGATACCGTGAGAC 475
Query 611 GTCAGATCTGTAGAGAGATCGAGATTTTACG-AGATG-TGAATCATCCAAACGTTGTGAA 668
||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||
Sbjct 476 GTCAGATCTGTAGAGAGATCGAGATCTTACGAAG-TGTTG-ATCATCCAAACGTTGTGAA 533
Query 669 ATGTCACGAGATGTTTGATCAGAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATAA 728
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 534 ATGTCACGAAATGTTTGATCATAACGGTGAGATCCAGGTTTTGCTTGAGTTTATGGATCA 593
Query 729 AGGTTCT-TTAGAAGGTGCTCATGTGTGGAAAGAGCAACAATTAGCTGATCTATCTCGTC 787
||| ||| || ||||| |||||||| ||| |||| || ||||||||||||| |||||||
Sbjct 594 AGGATCTCTT-GAAGGAGCTCATGTATGGCAAGAACAGGAATTAGCTGATCTCTCTCGTC 652
Query 788 AGATTCTTAGTGGTTTAGCTTATCTCCATAGCCGTCACATAGTTCATCGTGATATCAAAC 847
||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct 653 AGATTCTTAGTGGTTTAGCTTATCTTCATCGCCGTCACATCGTTCACCGTGATATCAAAC 712
Query 848 CATCGAATCTTTTGATAAACTCTGCTAAAAACGTTAAGATTGCTGATTTTGGAGTTAGTA 907
| ||||||||| | || ||||| ||||| || || || |||||||||||||| || ||||
Sbjct 713 CTTCGAATCTTCTCATTAACTCAGCTAAGAATGTGAAAATTGCTGATTTTGGTGTGAGTA 772
Query 908 GGATCTTGGCTCAGACTATGGATCCGTGTAATTCATCTGTTGGAACCATTGCTTATATGA 967
||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 773 GGATCTTGGCTCAAACCATGGATCCTTGTAATTCATCTGTTGGAACTATTGCTTATATGA 832
Query 968 GTCCTGAGAGGATTAACACTGATTTGAATCAGGGAAAGT-ATGATGGTTATGCTGGAGAT 1026
||||||||||||||||||||||||||||||| || || | |||||||| |||||||||
Sbjct 833 GTCCTGAGAGGATTAACACTGATTTGAATCATGGTC-GTTACGATGGTTACGCTGGAGAT 891
Query 1027 ATTTGGAGCTTAGGTGTTAGCATTTTGGAGTTTTACTTGGGGAGGTTTCCTTTCCCTGTG 1086
||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 892 GTTTGGAGCTTAGGTGTTAGTATCTTGGAGTTTTACTTGGGGAGGTTTCCTTTTAATGTG 951
Query 1087 AGTAGACAAGGTGATTGGGCTAGTCTTATGTGTGCCATTTGTATGTCTCAGCCTCCAGAA 1146
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 952 AGTAGACAAGGTGATTGGGCTAGTCTAATGTGTGCCATTTGTATGTCTCAGCCACCGGAA 1011
Query 1147 GCTCCAGCGACTGCGTCGCCGGAGTTTCGGCATTTTATCTCGTGTTGCTTGCAGAGAGAA 1206
||||| | ||| ||||| | ||||||||| || ||| | || |||||||| ||||| ||
Sbjct 1012 GCTCCGGTGACGGCGTCTCAGGAGTTTCGTCACTTTGTTTCTTGTTGCTTACAGAGTGAT 1071
Query 1207 CCGGGGAAAAGGAGGAGT--GCT-ATGCAGCTATTGCAGCATCCTTTCATA-TTAAGAGC 1262
|| || || | | || ||| | ||||| |||||||||||||||||| |||| |||
Sbjct 1072 CCTCCTAAGAG-ATG-GTCAGCTCAA-CAGCTTTTGCAGCATCCTTTCATACTTAA-AGC 1127
Query 1263 AA 1264
||
Sbjct 1128 AA 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5