BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51670.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914306 jgi|Araly1|914306|Al_scaffold_0001_4560 974 0.0
Ahg923812 jgi|Araly1|923812|scaffold_105093.1 669 0.0
Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721 69.4 4e-11
Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720 69.4 4e-11
Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1 63.9 2e-09
> Ahg914306 jgi|Araly1|914306|Al_scaffold_0001_4560
Length=708
Score = 974 bits (527), Expect = 0.0
Identities = 655/715 (92%), Gaps = 15/715 (2%)
Strand=Plus/Plus
Query 19 ATGGCACTCCCTCCCTATGATCCGAATTTCAC-ATTGGCTTTTTC-ATACGGTAGACGCG 76
|||||||||||||| ||||||||||||||||| ||| || || || || ||| |||||||
Sbjct 1 ATGGCACTCCCTCCATATGATCCGAATTTCACAATT-GCATTCTCAAT-CGGCAGACGCG 58
Query 77 ATAATGTCTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 136
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 A-AA-AT-TTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 115
Query 137 TTGAGCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCGCACTGAGTACT 196
||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 116 CTGAACTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGCGTCCACACTGAGTACT 175
Query 197 CAGCTCAGTATTTGGTGGACAAAGCTGG---CTCACGCAACCTCAGGCGCAGGCGCAAGC 253
|||||||||||||||||||||||||||| |||||| | | |||||||||| ||||||
Sbjct 176 CAGCTCAGTATTTGGTGGACAAAGCTGGTAGCTCACGTAGGCGCAGGCGCAGGGGCAAGC 235
Query 254 TCACTGTCAAGGACTGCCTTAACTTTGCGTTAAAGAAAGGCGGCATACCGAGAGCAGAAG 313
|||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 236 TCACTGTCAAAGACTGCCTTTTCTTTGCGTTAAAGAAAGGCGGAATACCGAAAGCAGAAG 295
Query 314 ATTGGCCACCTTTGGGATCTGAGTCAAAGACCCCATCATCGTACGAACCTGCTCTCGTTT 373
||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 296 ATTGGCCACCTTTGGGATCTGAGTCAAAGCCCCCCTCATCGTACAAACCTGCTCTCGTTT 355
Query 374 CCATGAAAGGAGAAGTGATTGAGCCTAAGGATATGGACGAAGTACCTGAGTTGTTGGTGC 433
|||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct 356 CCATGAAAGGAGAAGTGATTGAGCCTAAGGATATGGACCAAGTACGTGACTTGTTGGTGC 415
Query 434 ATCAATCAGCCGTGGGAGCAAAACTGCATGTGTTCACTCCACACATTGAACTTCAACAAG 493
||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 416 ATCAACCGGCCGTGGGAGCAAAACTTCATGTGTTCAGTCCACACATTGAACTTCAACAAG 475
Query 494 ACGCAATTTACT-TGCCTCGTCAGGTGAGTATGCGCGCTACGTTGGACTTAGAGATGGGA 552
|||||||||||| || |||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 476 ACGCAATTTACTGTGGCTCGTCAGGTGAGTATACGCGCTATGTTGGACTTAGAGATGCAA 535
Query 553 T-AGTAGTTGGAACAGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTATGGTAC 611
| | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 TCA-TAGTTGGAACGGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTTTGGTAC 594
Query 612 AAGAAGAAGTTTGTAGTTGTCAAAGTGGCTTTGAGCAGGATGTTTTATTTGG-CGGGCGT 670
||||| |||||| | || ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 595 AAGAATAAGTTTACATTTCTCAAAGTGGCTTTGAGCAGGATGTTTT-TTTGGGCGGGCGT 653
Query 671 AGGGCCATCTGTGCTGCTTGTGGACTTTTGTGTTCCACGCCTATCCATCGATTAA 725
||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 654 AGGGCCATCAGAGCTGCTTGTTGACTTTTGTGTCCCACGCCTATCCATCGATTAA 708
> Ahg923812 jgi|Araly1|923812|scaffold_105093.1
Length=756
Score = 669 bits (362), Expect = 0.0
Identities = 557/646 (86%), Gaps = 33/646 (5%)
Strand=Plus/Plus
Query 19 ATGGCACTCCCTCCCTATGATCCGAATTTCACATTGGCTTTTTC-ATACGGT-AGACGCG 76
||||||||||||||||||||||| ||||||||| |||| | | || | || ||||||
Sbjct 23 ATGGCACTCCCTCCCTATGATCCCAATTTCACAATGGCATCCACAAT-C-GTCGGACGCG 80
Query 77 ATAATGTCTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 136
| | | | || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 81 --CA-GACATCGACTTTGACCAAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 137
Query 137 TTGAGCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCGCACTGAGTACT 196
|| | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 138 TTAATCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCACAATGAGTACT 197
Query 197 CAGCTCAGTATTTGGTGGACAAAGCTGGCTCACGCAACCTCAGGCGCAGGCGCAAGCTCA 256
|||||| ||||||||||||||||||||| | | ||| | | | ||||||||||
Sbjct 198 CAGCTCCGTATTTGGTGGACAAAGCTGG-TGGCTCAAAC--A-----AT-CGCAAGCTCA 248
Query 257 CTGTCAAGGACTGCCTTAACTTTGCGTTAAAGAAAGGCGGCATACCGAGAGCAGAAGATT 316
|||| || ||||| |||| |||||| |||||||||||||||||||| | |||||||||||
Sbjct 249 CTGTGAAAGACTGTCTTACCTTTGCCTTAAAGAAAGGCGGCATACCAAAAGCAGAAGATT 308
Query 317 GGCCACCTTTGGGATCTGAGTCAAAGACCCCATCATCGTACGAACCTGCTCTCGTTTCCA 376
|| ||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 309 GGATACCCTTGGGATCTGAGTCAAAGCCCCCACCATCGTATAAACCTGCTCTCGTTTCCA 368
Query 377 TGAAAGGAGAA-GTGATTGAGCCTAAGGATATGGACGAAGTACCTGAGTTGTTGGTGCAT 435
||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 369 TGAAAGG-GAAAGTGATTGAGCCTAAGGATATGGAGGAAGTACGTGAGTTGTTGGTGCAT 427
Query 436 CAATCAGCCGTGGGAGCAAAACTGCATGTGTTCACTCCACACATTGAACTTCAACAAGAC 495
||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 428 CAACC-G--GTGGGAGCAAAACTGCATGTGTTCACACCACACATTGAACTTCAACAAGAC 484
Query 496 GCAATTTACT-TG-CCTCGTCAGGTGAGT-ATGCGCGCTACGTTGGACTTAGAGATGGGA 552
|| ||||||| || || ||||||||||| | | | |||| |||||||||||||||||||
Sbjct 485 GCGATTTACTGTGGCC-CGTCAGGTGAGCCAGG-GAGCTATGTTGGACTTAGAGATGGGA 542
Query 553 T-AGTAGTTGGAACAGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTATGGTAC 611
| | |||||||||| |||||| | ||||||||| ||||||||| ||||||||| ||||||
Sbjct 543 TCA-TAGTTGGAACGGAGAAGTTTCAAGGAAAGCCCATGGCAACAGTGAAGGTGTGGTAC 601
Query 612 AAGAAGAAGTTT-GTAGTTGTCAAAGTGGCTTTGAGCAGGATGTTT 656
|||||| ||| | | || ||||||||||||||||||||||||||
Sbjct 602 AAGAAG---TTTAG-ATTTCTCAAAGTGGCTTTGAGCAGGATGTTT 643
> Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721
Length=774
Score = 69.4 bits (37), Expect = 4e-11
Identities = 98/126 (78%), Gaps = 10/126 (8%)
Strand=Plus/Plus
Query 104 ACGATGAATCTGCTTC-TGCTGCTATCGTAGCGGTTG-AGCTGATAAGCTCTGCACGGCT 161
|||||| |||| | | ||| ||||| ||||||| || | ||||| |||||||||||| |
Sbjct 95 ACGATGCATCT-CAACATGCAGCTATGGTAGCGG-TGAATCTGATTAGCTCTGCACGGGT 152
Query 162 TGCA-CTT-AAGCTGGA-TAGTGTCCGCACTGAGTACTCAGCTCAGTATTTGGTGGACAA 218
| | ||| || || || | || ||||||||||||||||||||||||||||| ||
Sbjct 153 T--ATCTTCAAACTTGACT-CTGGGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAA 209
Query 219 AGCTGG 224
|||||
Sbjct 210 CGCTGG 215
> Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720
Length=834
Score = 69.4 bits (37), Expect = 4e-11
Identities = 97/125 (78%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 104 ACGATGAATCTGCTTC-TGCTGCTATCGTAGCGGTTG-AGCTGATAAGCTCTGCACGGCT 161
|||||| |||| | | ||| ||||| ||||| | || | ||||| |||||||||||| |
Sbjct 95 ACGATGCATCT-CAACATGCAGCTATGGTAGCAG-TGAATCTGATTAGCTCTGCACGGGT 152
Query 162 T-GCACTTAAGCTGGATAG-TGTCCGCACTGAGTACTCAGCTCAGTATTTGGTGGACAAA 219
| | || || || || | ||| | |||||||||||||||||||||||||||| ||
Sbjct 153 TATC-CTCAACCTTGA-CGCTGTGAGGTCTGAGTACTCAGCTCAGTATTTGGTGGATAAT 210
Query 220 GCTGG 224
|||||
Sbjct 211 GCTGG 215
> Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1
Length=1050
Score = 63.9 bits (34), Expect = 2e-09
Identities = 92/118 (78%), Gaps = 12/118 (10%)
Strand=Plus/Plus
Query 104 ACGATGAATCTGC-TTCTGCTGCTATCG-TAGCGGTTGAG-CTGATAAGCTCTGCACGGC 160
|||||| |||| | ||||| ||| | | |||||| ||| ||||| ||||||||||||
Sbjct 135 ACGATGCATCT-CAATCTGCAGCT-TTGATAGCGG-CGAGTCTGATTAGCTCTGCACGGG 191
Query 161 TTGCA-CTT-AAGCTGGA-TAGTGTCCGCACTGAGTACTCAGCTCAGTATTTGGTGGA 215
|| | ||| ||||| || | || |||||||||||||||||||||||||||||
Sbjct 192 TT--ATCTTCAAGCTCGACT-CTGAGTATACTGAGTACTCAGCTCAGTATTTGGTGGA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5