BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51680.1
Length=2029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923657 jgi|Araly1|923657|scaffold_104938.1 2599 0.0
Ahg905145 jgi|Araly1|905145|Al_scaffold_0003_2273 1319 0.0
> Ahg923657 jgi|Araly1|923657|scaffold_104938.1
Length=1714
Score = 2599 bits (1407), Expect = 0.0
Identities = 1580/1666 (95%), Gaps = 2/1666 (0%)
Strand=Plus/Plus
Query 119 GTGATGGAGAAACAGAGCAACAACAACAACAGTGACGTCATTTTCCGATCAAAGTTACCG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 39 GTGATGGAGAAACAGAGCAACAACAACAACAGTGACGTCATTTTCCGATCAAAGCTACCG 98
Query 179 GATATTTACATCCCGAACCACCTATCTCTCCACGACTACATCTTCCAAAACATCTCCGAA 238
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 99 GATATTTACATCCCAAACCACCTCTCTCTCCACGACTACATCTTCCAAAACATCTCCGAA 158
Query 239 TTCGCCACTAAGCCTTGCCTAATCAACGGACCAACCGGCCACGTGTACACTTACTCCGAC 298
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 159 TTCGCCACCAAGCCTTGCCTAATCAACGGACCAACCGGACACGTGTACACTTACTCAGAC 218
Query 299 GTCCACGTCATCTCCCGCCAAATCGCCGCCAATTTTCACAAACTCGGCGTTAACCAAAAC 358
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 219 GTCCACGTCATCTCCCGCCGAATCGCCGCCGGTTTTCACAAACTCGGCGTTAACCAAAAC 278
Query 359 GACGTCGTCATGCTCCTCCTCCCAAACTGTCCCGAATTCGTCCTCTCTTTCCTCGCCGCC 418
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 279 GACGTCGTCATGCTCCTCCTCCCAAACTGCCCCGAATTCGTCCTCTCTTTCCTCGCCGCT 338
Query 419 TCCTTCCGCGGCGCAACCGCCACCGCCGCAAACCCTTTCTTCACTCCGGCGGAGATAGCT 478
|| ||||||||||||| |||||||||||| || || |||||||||||||||||||| |||
Sbjct 339 TCTTTCCGCGGCGCAATCGCCACCGCCGCGAATCCATTCTTCACTCCGGCGGAGATCGCT 398
Query 479 AAACAAGCCAAAGCCTCCAACACCAAACTCATAATCACCGAAGCTCGTTACGTCGACAAA 538
||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||
Sbjct 399 AAACAAGCCAAAGCCTCCAACTCCAAACTCATCATCACCGAATCTCGCTACGTCGACAAA 458
Query 539 ATCAAA-CCACTTCAAAACGACGACGGAGTAGTCATCGTCTGCATCGACGACAACGAATC 597
|||||| || || ||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 459 ATCAAATCC-CTCCAAAAGGACGACGGAGTCGTTATCGTCTGCATCGACGACAACGAATC 517
Query 598 CGTGCCAATCCCTGAAGGCTGCCTCCGCTTCACCGAGTTGACTCAGTCGACAACCGAGGC 657
||| || |||||||| ||||||||||| || ||||| ||||||||||| ||||||||| |
Sbjct 518 CGTCCCTATCCCTGACGGCTGCCTCCGATTTACCGAATTGACTCAGTCAACAACCGAGTC 577
Query 658 ATCAGAAGTCATCGACTCGGTGGAGATTTCACCGGACGACGTGGTGGCACTACCTTACTC 717
|||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 578 ATCAGACGTAATCGACTCGGTTGAGATTTCACCGGACGACGTGGTGGCGCTTCCTTACTC 637
Query 718 CTCTGGCACGACGGGATTACCAAAAGGAGTGATGCTGACTCACAAGGGACTAGTCACGAG 777
||| |||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 638 CTCCGGCACGACGGGACTACCCAAAGGAGTGATGCTGACACACAAAGGACTAGTCACGAG 697
Query 778 CGTTGCTCAGCAAGTCGACGGCGAGAACCCGAATCTTTATTTCCACAGCGATGACGTCAT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 CGTTGCTCAGCAAGTCGACGGCGAGAACCCGAATCTTTATTTCCACAGCGATGACGTCAT 757
Query 838 ACTCTGTGTTTTGCCCATGTTTCATATCTACGCTTTGAACTCGATCATGTTGTGTGGTCT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 ACTCTGTGTTTTGCCCATGTTTCATATCTACGCTTTGAACTCGATCATGTTGTGTGGTCT 817
Query 898 TAGAGTTGGTGCGGCGATTCTGATAATGCCGAAGTTTGAGATCAATCTGCTATTGGAGCT 957
| |||||||||| ||||||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 818 TCGAGTTGGTGCTGCGATTCTGATAATGCCTAAATTTGAGATTAATCTGCTTTTGGAGCT 877
Query 958 GATCCAGAGGTGTAAAGTGACGGTGGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGC 1017
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GATTCAGAGGTGTAAAGTGACGGTGGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGC 937
Query 1018 GAAGTCTTCGGAGACGGAGAAGTATGATTTGAGCTCGATAAGAGTGGTGAAATCTGGTGC 1077
|||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 938 GAAGTCGCCGGAGACGGAGAAGTATGATTTGAGTTCAATAAGAGTGGTGAAATCAGGTGC 997
Query 1078 TGCTCCTCTTGGTAAAGAACTTGAAGATGCCGTTAATGCCAAGTTTCCTAATGCCAAACT 1137
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 998 TGCTCCTCTTGGTAAAGAGCTTGAAGATGCCGTTAGTGCCAAGTTTCCTAATGCCAAACT 1057
Query 1138 CGGTCAGGGATACGGAATGACGGAAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGC 1197
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CGGTCAGGGATACGGAATGACAGAAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGC 1117
Query 1198 AAAGGAACCTTTTCCGGTTAAGTCAGGAGCTTGTGGTACTGTTGTAAGAAATGCTGAGAT 1257
||| || || || ||||| || ||||||||||||||||| || |||||||| || |||||
Sbjct 1118 AAAAGAGCCGTTCCCGGTGAAATCAGGAGCTTGTGGTACGGTGGTAAGAAACGCCGAGAT 1177
Query 1258 GAAAATAGTTGATCCAGACACCGGAGATTCTCTTTCGAGGAATCAACCCGGTGAGATTTG 1317
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1178 GAAAATAGTTGATCCAGACACCGGAGATTCTCTTTCGAGGAATCAGCCCGGTGAGATATG 1237
Query 1318 TATTCGTGGTCACCAGATCATGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGAC 1377
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CATCCGTGGTCACCAAATCATGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGAC 1297
Query 1378 CATTGATAAAGACGGTTGGCTTCATACTGGAGATATTGGATTGATCGATGACGATGACGA 1437
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1298 CATTGATAAAGATGGTTGGCTTCACACTGGAGATATTGGATTGATCGATGACGATGACGA 1357
Query 1438 GCTTTTCATCGTTGATCGATTGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GCTTTTCATCGTTGATCGATTGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCC 1417
Query 1498 GGCTGAGCTAGAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGC 1557
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1418 AGCTGAGCTAGAGGCTTTGCTCATCGGTCATCCCGACATTACTGATGTTGCTGTTGTCGC 1477
Query 1558 AATGAAAGAAGAAGCAGCTGGTGAAGTTCCTGTTGCATTTGTGGTGAAATCGAAGGATTC 1617
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1478 AATGAAAGAAGAAGCTGCTGGTGAAGTTCCAGTTGCATTTGTGGTGAAATCGAAGGATTC 1537
Query 1618 GGAGTTATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAG 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 AGAGTTATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAG 1597
Query 1678 AATCAACAAAGTGTTCTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAG 1737
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1598 AATCAACAAAGTGTTTTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATTTTGAG 1657
Query 1738 GAAAGATCTGAGGGCAAAACTAGCAAATGGATTGTGATGGATGATT 1783
|||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1658 GAAAGATCTGAGGGCAAAACTAGCAAATGGGTTGTGATCGATGATT 1703
> Ahg905145 jgi|Araly1|905145|Al_scaffold_0003_2273
Length=1620
Score = 1319 bits (714), Expect = 0.0
Identities = 1338/1636 (82%), Gaps = 56/1636 (3%)
Strand=Plus/Plus
Query 151 TGACGTCATTTTCCGATC-AAAGTTACCGGATATTTACATCCCGAACCACCTATCTCTCC 209
||||||||||||||| || ||| || ||||||||||| ||||| ||||||||| | ||||
Sbjct 15 TGACGTCATTTTCCGGTCGAAA-TTGCCGGATATTTATATCCCTAACCACCTACCACTCC 73
Query 210 ACGACTACATCTTCCAAAACATCTCCGAATTCGCCACTAAGCCTTGCCTAATCAACGGAC 269
|||||||||||||| |||||||||| || |||||| |||| || || | |||||||| |
Sbjct 74 ACGACTACATCTTCGAAAACATCTCTGAGTTCGCCGCTAAACCATGTTTGATCAACGGTC 133
Query 270 CAACCGGCCACGTGTACACTTACTCCGACGTCCACGTCATCTCCCGCCAAA-TCGCCGCC 328
| |||||| | || ||||| ||| ||||||| |||| ||| || || ||| ||||||||
Sbjct 134 CCACCGGCGAGGTATACACCTACGCCGACGTACACGCCATATCGCG-GAAACTCGCCGCC 192
Query 329 AATTTTCACAA-ACTCGGCGTTAACCAAAACGACGTCGTCATGCTCCTCCTCCCAAACTG 387
| |||| || | ||||||| |||||| |||||||||| |||||||||||||| ||||
Sbjct 193 GGTCTTCA-AATAGTCGGCGTGAACCAACACGACGTCGTAATGCTCCTCCTCCCGAACTC 251
Query 388 TCCCGAATTCGTCCTCTCTTTCCTCGCCGCCTC-CTTCCGCGGCGCAACCGCCACCGCCG 446
||| ||| | |||||| |||||||||| || || | || |||||||| | |||| | |
Sbjct 252 TCCAGAAGTAGTCCTCACTTTCCTCGCAGCTTCAC-TCATCGGCGCAATCACCACTTCAG 310
Query 447 CAAACCCTTTCTTCACTCCGGCGGAGATAGCTAAACAAGCCAAAGCCTCCAACACCAAAC 506
| ||||| |||||||||||||||||||| |||||||||||||||||||| | | ||||
Sbjct 311 CGAACCCGTTCTTCACTCCGGCGGAGATCTCTAAACAAGCCAAAGCCTCCGCCGCGAAAC 370
Query 507 TCATAATCAC-CGAAGCTCGTTACGTCGACAAAATCAAACCACTTCAAAACGACGACGGA 565
|||| |||| | || |||||||| |||| |||||| || || || ||| |||||||
Sbjct 371 TCATCGTCACTC-AATCTCGTTACTTCGATAAAATC-AAGAACCTCCAAA--ACGACGGC 426
Query 566 GTAGTCATCGTCTGCATCGACGACAACGAATCCGTGCCAATCCCTGAAGGCTGCCTCCGC 625
|| | |||||| || | |||| || | ||| | ||||| ||| ||||||||||
Sbjct 427 GTCTTGATCGTCACCA-C--CGACTCCG-A--CGT--C-ATCCCCGAAAACTGCCTCCGC 477
Query 626 TTCACCGAGTTGACTCAGTCGACAACCGAGGCATCAGAAGTCATCGACTCGGTGGAGATT 685
||| |||||||||||||||| | ||| | || | ||||| |||| ||||||
Sbjct 478 TTCTCCGAGTTGACTCAGTC--C-GGCGA--CCTCCG-AGTCA---ACTC---CGAGATT 525
Query 686 TCACCGGACGACGTGGTGGCACTACCTTACTCCTCTGGCACGACGGGAT-TACCAAAAGG 744
|| || |||||||| ||||| || |||| |||||||||||||||||| | | || || ||
Sbjct 526 TCGCCAGACGACGTCGTGGCGCTTCCTTTCTCCTCTGGCACGACGGG-TCTGCCCAAGGG 584
Query 745 AGTGATGCTGACTCACAAGGGACTAGTCACGAGCGTTGCTCAGCAAGTCGACGGCGAGAA 804
||||||||| || || || || || ||||||||||| || ||||||||||||||||||||
Sbjct 585 AGTGATGCTAACACATAAAGGTCTCGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAA 644
Query 805 CCCGAATCTTTATTTCCACAGCGATGACGTCATACTCTGTGTTTTGCCCATGTTTCATAT 864
||| |||||||| ||| |||| || ||||| || |||||||| ||||| ||||| |||||
Sbjct 645 CCCAAATCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATAT 704
Query 865 CTACGCT-TTGAACTCGATCATGTTGTGTGGTCTTAGAGTTGGTGCGGCGATTC-TGATA 922
||||||| || ||||| |||||| | ||| |||| ||||| ||||| ||| || |||||
Sbjct 705 CTACGCTCTT-AACTCCATCATGCTCTGTAGTCTCAGAGTCGGTGCCACGA-TCTTGATA 762
Query 923 ATGCCGAAGTTTGAGATCAATCTGC-TATTGGAGCTGATCCAGAGGTGTAAAGTGACGGT 981
||||| || || ||||||| ||| | | || |||| ||| || ||||||||||| |||||
Sbjct 763 ATGCCTAAATTCGAGATCACTCT-CTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGT 821
Query 982 GGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGCGAAGTCTTCGGAGACGGAGAAGTA 1041
|||| | | || || ||||| || || || ||||| ||||| ||||||||||||||||
Sbjct 822 GGCTATGGTCGTGCCACCGATCGTTTTAGCTATTGCAAAGTCGCCGGAGACGGAGAAGTA 881
Query 1042 TGATTTGAGCTC-GATAAGAGTGGTGAAATCTGGTGCTGCTCCTCTTGGTAAAGAACTTG 1100
|||| |||| || | || || |||| || ||||| || ||||||||||||||||||||||
Sbjct 882 TGATCTGAGTTCGGTTAGGA-TGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAAGAACTTG 940
Query 1101 AAGATGCCGTTAATGCCAAGTTTCCTAATGCCAAACTCGGTCAGGGATACGGAATGACGG 1160
||||||| ||| ||| ||||||||||| ||||| || |||||||| || || ||||| |
Sbjct 941 AAGATGCTATTAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAG 1000
Query 1161 AAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGC-AAAGGAACCTTTTCCGGTTAAG 1219
|||| ||||| |||||||||||||||||||| ||||| |||| | || ||||| || ||
Sbjct 1001 AAGCGGGTCCGGTGCTAGCAATGTCGTTAGGGTTTGCTAAAG-AGCCGTTTCCAGTGAAA 1059
Query 1220 TCAGGAGCTTGTGGTACTGTTGTAAGAAATGCTGAGATGAAAATAGTTGATCCAGACACC 1279
|||||||| |||||||| || || || || || |||||||| ||| ||||||||||||||
Sbjct 1060 TCAGGAGCATGTGGTACAGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACC 1119
Query 1280 GGAGATTCTCTTTCG-AGGAATCAACCCGGTGAGATTTGTATTCGTGGTCA-CCAGATCA 1337
|||||||| ||| | ||||||||| |||| || || || |||||||| || ||| ||||
Sbjct 1120 GGAGATTC-CTTGCCTAGGAATCAAGCCGGCGAAATCTGCATTCGTGG-CAACCAAATCA 1177
Query 1338 TGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGACCATTGATAAAGACGGTTGGC 1397
||||||| || ||||| |||||| ||||| ||| ||| || ||||||||||||||||
Sbjct 1178 TGAAAGGCTATCTCAATGATCCGGTGGCTACCGCATCGACGATCGATAAAGACGGTTGGC 1237
Query 1398 TTCATACTGGAGATATTGGATTGATCGATGACGATGACGAGCTTTTCATCGTTGATCGAT 1457
|||| || ||||| ||||||| ||||||||||| |||||||||||||| || ||| |||
Sbjct 1238 TTCACACAGGAGACGTTGGATTCATCGATGACGACGACGAGCTTTTCATTGTCGATAGAT 1297
Query 1458 TGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCGGCTGAGCTAGAGGCTTTGC 1517
|||||||||| |||||||| ||||| ||||| || ||||| |||||||||||| || | |
Sbjct 1298 TGAAAGAACTCATCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCC 1357
Query 1518 TCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCAATGAAAGAAGAAGCA-GCT 1576
|||| ||||| ||||| || | |||||||||||| ||||||||||||||||||| | |||
Sbjct 1358 TCATAGGTCACCCTGAAATCAATGATGTTGCTGTCGTCGCAATGAAAGAAGAAG-ATGCT 1416
Query 1577 GGTGAAGTTCCTGTTGCATTTGTGGTGA-AATCGAAGGATTCGGAGT-TATCAGAAGATG 1634
||||| |||||||| || |||||||||| || |||| || ||| | | |||| |||||||
Sbjct 1417 GGTGAGGTTCCTGTGGCGTTTGTGGTGAGAA-CGAAAGAGTCGAA-TATATCCGAAGATG 1474
Query 1635 ATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAGAATCAACAAAGTGTTCT 1694
| | ||| |||||||||| ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1475 AAATCAAGGAATTCGTGTCAAAACAGGTTGTGTTTTATAAGAGGATCAATAAAGTGTTCT 1534
Query 1695 TCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAAGATCTGAGGGCAA 1754
||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1535 TCACTGACTCTATTCCAAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAA 1594
Query 1755 AACTAGCAAATGGATT 1770
|||||||||||||||
Sbjct 1595 GACTAGCAAATGGATT 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76294760735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5