BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51690.3
Length=2336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474285 jgi|Araly1|474285|fgenesh2_kg.1__4239__AT1G51690.1 3114 0.0
Ahg930082 jgi|Araly1|930082|scaffold_302539.1 1772 0.0
Ahg471984 jgi|Araly1|471984|fgenesh2_kg.1__1938__AT1G17720.1 684 0.0
> Ahg474285 jgi|Araly1|474285|fgenesh2_kg.1__4239__AT1G51690.1
Length=3341
Score = 3114 bits (1686), Expect = 0.0
Identities = 1954/2073 (94%), Gaps = 60/2073 (3%)
Strand=Plus/Plus
Query 274 GAGTGTGTGTGAATCGgagagagcgagagacagagagagagagagGGAAATGAACGGTGG 333
||||||||||||||| | ||||||||| | ||||||||| |||||| ||||||||||||
Sbjct 1314 GAGTGTGTGTGAATC-G-GAGAGCGAGCG--AGAGAGAGAAAGAGGG-AATGAACGGTGG 1368
Query 334 TGATGAGGTCGTCGCAGCTTCGGCAGACCCATCTCTGCCTTTGGAATGGAGATTCTCTCA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TGATGAGGTCGTCGCAGCTTCGGCAGACCCATCTCTGCCTTTGGAATGGAGATTCTCTCA 1428
Query 394 GGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAGAAGTTGATATAATCTCAGCGAT 453
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1429 GGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAGAAGTTGATATAATTTCAGCGAT 1488
Query 454 TGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGGACCGTGGAGGACGTGTTGTTCT 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGGACCGTGGAGGACGTGTTGTTCT 1548
Query 514 TTTCGAGAGAACCGATACCAATAATAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGA 573
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1549 TTTCGAGAGGACCAATACCAATAATAGCAGTGGAACCAGGAGAGAGCTTGAAGAAGCTGA 1608
Query 574 TTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGA 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGA 1668
Query 634 GTTTGATTACCTCAAGAGTTTGGAGATAGAGGAGAAAATTAACAAAATTAGATGGTGTCA 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 GTTTGATTACCTCAAGAGTTTGGAGATAGAGGAGAAAATTAACAAAATTAGATGGTGTCA 1728
Query 694 AACAGCAAATGGAGCTCTTTTTCTCCTCTCGACCAATGATAAAACCATCAAGTTTTGGAA 753
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1729 AACAGCAAATGGTGCTCTTTTTCTCCTATCGACGAATGATAAAACCATCAAGTTTTGGAA 1788
Query 754 GGTTCAAGACAAGAAGATCAAGAAAATCTGTGATATGAATTCAGATCCTTCAAGAACTGT 813
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1789 GGTTCAAGACAAGAAGATCAAGAAAATTTGTGATATGAATTCAGATCCTTCAAGAACTAT 1848
Query 814 AGGAAACGGAACCGTTGCAAGCTCGAGCAATTCAAACATTACAAACTCATGCCTTGTGAA 873
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1849 AGGAAATGGAACCGTTGCAAGCTCGAGCAATTCAAACATTACAAGCTCATGCCTTGTGAA 1908
Query 874 TGGAGGAGTATCTGAAGTGAACAACTCCTTATGTAATGACTTCTCATTGCCAGCAGGAGG 933
||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1909 TGGAGGAGTATCTGAAGCGAACAACTCCTTATGTACTGACTTCTCTTTGCCACCAGGAGG 1968
Query 934 CATCTCTTCGCTGCGATTACCAGTGGTA--A-CTAGCCATGAGTCGAGCCCTGTGGCTAG 990
|||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 1969 CATCTCTTCGCTGCGATTACCAGTGGTAGTAACTAGCCATGAGTCGAGCCCTATGGCTAG 2028
Query 991 ATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 ATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAG 2088
Query 1051 CGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATTAATCTTTGGAATCTGGAAAT 1110
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2089 TGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATAAATCTTTGGAATCTGGAAAT 2148
Query 1111 TAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAAATGGAAGATCTATCTGA 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2149 TAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAAATGGAAGATCTATCTGA 2208
Query 1171 GGTTATCACATCAGCAGAATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTC 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2209 GGTTATCACATCAGCAGAATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTC 2268
Query 1231 GAAAGGTTCAATTCGCCTGATTGATCTGCGCCAGTCAGCTTTATGTGATTCACATTCAAA 1290
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2269 AAAAGGTTCAATTCGCCTGATTGATCTGCGGCAATCAGCTTTATGTGATTCACATTCAAA 2328
Query 1291 ATTGTTTGAGGAACCAGAGCAAGCAGGTCCTAAATCGTTCTTTACTGAGATAATTGCTTC 1350
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2329 ATTGTTTGAGGAACCAGAGCAAGCAAGTCCTAAATCGTTCTTCACTGAGATAATTGCTTC 2388
Query 1351 AGTCTCAGACATCAAATTTGCAAAAGAAGGAAGATATCTACTTAGCCGTGACTATATGAC 1410
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2389 AGTCTCAGACATCAAATTTGCAAAAGAAGGAAGATATCTACTCAGCCGTGACTACATGAC 2448
Query 1411 ACTTAAGTTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGA 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2449 ACTTAAGTTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGA 2508
Query 1471 ATATTTGAAACCAAAGCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGA 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 ATATTTGAAACCAAAGCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGA 2568
Query 1531 GTGTTGTATAAGTGGCAATGGCTTGCGAGCAGCTACAGGTTCTTACAGCAATCTGTTCCG 1590
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2569 GTGTTGTATAAGTGGCAATGGTTTGCGAGCAGCTACGGGTTCTTACAGCAATCTGTTCCG 2628
Query 1591 TGTGTTTGGTGTTGCCCCCGGAAGTACTGAGACGGCAACCTTAGAAGCAAGCAGAAACCC 1650
|||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 2629 TGTGTTTGGTGTTGCCCCGGGAGGTACTGAGACTGCAACCTTAGAAGCAAGCAGAAACCC 2688
Query 1651 AATGAGGAGACATGTCCCAATTCCGTCGAGGCCATCCAGAGCACTAAGCAGTATAACGCG 1710
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 2689 AATGAGGAGACATGTCCCAATTCCGTCGAGGCCATCCAGAACACTAAGCAGCATAACGCG 2748
Query 1711 TGTCGTAAGTAGAGGATCAGAGAGTCCGGGAGTCGATGGGAATACTAATGCTCTTGATTA 1770
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2749 TGTTGTAAGTAGAGGATCAGAGAGTCCTGGAGTCGATGGAAATACTAATGCTCTTGATTA 2808
Query 1771 CACAACAAAGCTGCTGCATCTTGCTTGGCATCCAAACGAGAACTCAATTGCTTGCGCCGC 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 CACAACAAAGCTGCTGCATCTTGCTTGGCATCCAAACGAGAACTCAATTGCTTGCGCCGC 2868
Query 1831 TGCAAATAGCTTGTACATGTACTATGCTTAACTCAATACTCAGCAAAAAAGAAGAAGAAG 1890
|||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||
Sbjct 2869 TGCAAATAGCTTGTACATGTACTATGCTTAACTCAATACTCAGCCAAAAA-AA-A-GAAG 2925
Query 1891 CAGAAAAGGCGCATTTCCTTGCTCTAGACTCTGTTTTTCTT-GGTTCCGTATGGTTTGAT 1949
|||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 2926 CAGAAAAGGCGCATCTCCTTGCTCTAGACTCTGTTTTTCTTTGGTTCCCTATGGGTTGAT 2985
Query 1950 TGATGGGGATTGCTATATACA---T--C-ATCATGATTGTCACTCACACATGATCTGTAA 2003
||||||||||||||||||||| | | ||||| ||||||||||||||||||||| |||
Sbjct 2986 TGATGGGGATTGCTATATACACCATTACCATCATCATTGTCACTCACACATGATCTTTAA 3045
Query 2004 TCATCATCGTGGACTTATGGGGGAATGGCATGGGGAGAAGGCAAGCAGTGAAAAACCAAT 2063
|||||| | | || || | || | | |||| ||| | | | | |
Sbjct 3046 TCATCA------A---A-GGC--AA-G-CA-GTGAAGAAC-CAA--A-TCATTTTC---T 3083
Query 2064 CATTTTCTCTCTTTCttttttt-CGTTTTAAGTGTAGAATTTTTCACTTGTGCACTTGGA 2122
| |||||| | || |||||||| ||| ||||||||||||||||| || || | |
Sbjct 3084 C-TTTTCT-T-TT-CTTTTTTTTCGT---AAGTGTAGAATTTTTCA-TT-TG-----G-A 3128
Query 2123 AACTACTTTACAGGCCAAG-AAAAAA-GAACAAAGAAAATCCGATTGGAAGAAATCGTGA 2180
|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 3129 AACTACTTCACAGGCCAAGCAAAAAAAGAACAAAGAAAATCCGATTGGAAGAAATCGTGA 3188
Query 2181 TTTTAGTAAGCTAATCATCTCGTATGACTTTTGGATGGATATAGATTAGAT-TTTTATAA 2239
||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 3189 TTTTAGTAAACTAATCATCTCATATGACTTATGGATGGATATAGATTAGATATTTTATAA 3248
Query 2240 TCTTTCCTGGTCTGTTGTGTAATCATTGTTTTATTGATTCTTTTGTTAAACTTGTTTCT- 2298
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3249 TCTTTCCTGGTCTTTTGTGTAATCATTGTTTTATTGATTCTTTTGTTAAACTTGTTTCTT 3308
Query 2299 ACTTTCTTGACTTCTTAAAATAATACATTTCAT 2331
|||||||| ||||||||||||||||||||||||
Sbjct 3309 ACTTTCTTTACTTCTTAAAATAATACATTTCAT 3341
> Ahg930082 jgi|Araly1|930082|scaffold_302539.1
Length=1585
Score = 1772 bits (959), Expect = 0.0
Identities = 1384/1585 (87%), Gaps = 45/1585 (3%)
Strand=Plus/Plus
Query 302 gacagagagagagagagGGAAATGAACGGTGGTGATGAGGTCGTCGCAGCTTCGGCAGAC 361
|||||||| |||||||| | |||||||||||||||||||| | || |||||||| |||
Sbjct 1 GACAGAGACAGAGAGAGAG-AATGAACGGTGGTGATGAGG-C--CGGAGCTTCGGGAGA- 55
Query 362 CCAT-CTCTGCCT-TTGGAATGGAGATTCTCTCAGGTCTTCGGTGAACGAAGCGCTGGTG 419
| | ||| |||| || || ||||||||||||||||| || |||||||| ||||||||||
Sbjct 56 CTTTCCTCAGCCTCTT-GATTGGAGATTCTCTCAGGTTTTTGGTGAACGCAGCGCTGGTG 114
Query 420 AAGAAGTTCAAGAAGTTGATATAATCTCAGCGATTGAATTTGATAATTCTGGAAACCATC 479
||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||
Sbjct 115 AAGAAGTTCAAGAAGTTGATATAATTTCTGCGATTGAGTTTGATAAATCTGGTGACCATC 174
Query 480 TTGCTACTGGGGACCGTGGAGGACGTGTTGTTCTTTTCGAGAGAACCGATACCAATAATA 539
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||
Sbjct 175 TTGCTACTGGGGACCGTGGTGGACGTGTTGTTCTTTTCGAGAGAACAGATTCCAAAAATA 234
Query 540 GCAGTGGAACCAGAAGAGAGCTTGAA-GAAGCTGATTATCCACTGAGGCATCCAGAGTTT 598
||||||| | || ||||| |||||| ||| | || ||||| |||||||| ||||| |||
Sbjct 235 CCAGTGGAGCAAGGAGAGATCTTGAAGGAA-CAGACTATCCTCTGAGGCACCCAGAATTT 293
Query 599 CGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGTTTGATTACCTCAAGAGTTTGGAG 658
||||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 294 CGTTATAAAACTGAATTTCAAAGTCATGAACCAGAGTTTGATTACCTCAAGAGTTTGGAG 353
Query 659 ATAGAGGAGAAAATTAACAAAATTAGATGGTGTCAAACAGCAAATGGAGCTCTTTTTCTC 718
|||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 354 ATAGAGGAGAAAATCAATAAAATTAGATGGTCTCAAACAGCAAATGGTGCTCTTTTTCTC 413
Query 719 CTCTCGACCAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGACAAGAAGATCAAGAAA 778
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 414 CTTTCGACAAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGATAAAAAGATCAAGAAA 473
Query 779 ATCTGTGATATGAATTCAGATCCTT-CAAGAACTGTAGGAAACGGAACCGTTGCAAGCTC 837
||||||||||| ||| ||||| ||| ||| |||| ||||||| |||| |||||||||||
Sbjct 474 ATCTGTGATATAAATACAGATTCTTCCAA-AACTCTAGGAAATGGAAGTGTTGCAAGCTC 532
Query 838 GAGCAATTCAAACATTACAAACTCATGCCT-TGTGAATGGAGGAGTATCTG---AAGTGA 893
|| || ||||||| ||||||| | ||||| | ||||||||| || ||| |||| |
Sbjct 533 AAGTAACTCAAACAGTACAAACACCTGCCTCACT-AATGGAGGATTACCTGACAAAGTAA 591
Query 894 ACAACTCCTTATGTAATGACTTCTCATTGCCAG-CAGGAGGCATCTC-TTCGCTGCGATT 951
|||| || ||| ||||||||||||||||||| | ||||||||||| | || |||||||||
Sbjct 592 ACAATTCTTTAAGTAATGACTTCTCATTGCC-GCCAGGAGGCATCCCATT-GCTGCGATT 649
Query 952 ACCAGTGGT-A--ACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGC 1008
||| ||||| | ||||| |||||| | ||||||||||||||||||||||||||||| |
Sbjct 650 ACCTGTGGTAACTACTAGTCATGAGACTAGCCCTGTGGCTAGATGTCGAAGAGTATACAC 709
Query 1009 TCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGCGACGGCGAAACATTTAT 1068
|||||| |||||||||||||| |||||||||||||| || || || ||||| ||||||||
Sbjct 710 TCATGCCCATGATTATCATATCAATTCAATCTCAAACAATAGTGATGGCGAGACATTTAT 769
Query 1069 TTCTGCTGATGATTTGCGAATTAATCTTTGGAATCTGGAAATTAGCAATCAAAGTTTCAA 1128
||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||
Sbjct 770 TTCTGCTGACGATTTGCGAATAAATCTTTGGAACCTGGAAATCAGCAATCAAAGTTTTAA 829
Query 1129 TATTGTTGATGTCAAGCCTGCGAAA-ATGGAAGATCTATCTGAGGTTATCACATCAGCAG 1187
|||||||||||||||||||| ||| |||||||||||| ||||||| || |||||||| |
Sbjct 830 CATTGTTGATGTCAAGCCTGC-AAATATGGAAGATCTAACTGAGGTCATAACATCAGCCG 888
Query 1188 AATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTCGAAAGGTTCAATTCGCC 1247
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 889 AATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTCGAAAGGCTCAATTCGCC 948
Query 1248 TGATTGATCTGCGCCAGTCAGCTTTATGTGATTCACATTCAAAATTGTTTGAGGA-ACCA 1306
||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |
Sbjct 949 TGATTGATCTGCGACAATCAGCTTTATGTGACTCACATTCCAAATTGTTTGAGGACAC-A 1007
Query 1307 GAG-CAAGCAGGTCCTAAATCGTTCTTT-ACTGAGATAATTGCTTCAGTCTCAGACATCA 1364
||| || || || ||| ||| || ||| || ||||||||||||||| | ||||||||||
Sbjct 1008 GAGACAC-CAAGTTCTAGATCATT-TTTCACGGAGATAATTGCTTCAATTTCAGACATCA 1065
Query 1365 AATTTGCAAAAGAAGGAAGATATCTACTTAGCCGTGACTATATGACACTTAAGTTATGGG 1424
||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1066 AATTTGCGAAAGAAGGAAGATATATACTTAGCCGTGACTACATGACACTTAAGTTATGGG 1125
Query 1425 ACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAA-ACCA 1483
|||| ||||||||| ||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct 1126 ACATTAACATGGACTCAGGTCCAGTATCAACTTTCCAGGTTCATGAACATTT-AAGACCA 1184
Query 1484 AAGCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGTATAAGT 1543
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1185 AAGCTCTGTGATTTATATGAAAATGATTCCATCTTCGATAAGTTCGAGTGTTGTCTAAGT 1244
Query 1544 GGCAATGGCTTGCGAGCAG-CTACAGGTTCTTACAGCAATCTGTTCCGTGTGTTTGGTGT 1602
|| | || ||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1245 GGGGACGGATTGCGAGT-GTCTACAGGTTCTTACAGCAATCTCTTCCGTGTGTTTGGTGT 1303
Query 1603 TGCCCCCGGAAGTACTGAGACGG-CAACCTTAGAAGCAAGCAGAAACCCAATGAGGAGAC 1661
| |||| ||||||||||| | | ||||||| |||||||||| ||| |||||||||||||
Sbjct 1304 TTCCCCGGGAAGTACTGAAA-GTACAACCTTGGAAGCAAGCAAAAATCCAATGAGGAGAC 1362
Query 1662 ATGTCCCAATTCCGTCGAGGCCATCCAGAGCACTAAGCAGTATAACGCGTGTCGTAAGTA 1721
| ||| | | ||| ||||||||||| ||| | |||||||||||||| || || || || |
Sbjct 1363 AAGTCACTACTCCATCGAGGCCATCAAGATCGCTAAGCAGTATAACACGCGTGGTTAGAA 1422
Query 1722 GAGGATCAG-AGAG--TCCGGGAGTCGATGGGAATACTAATGCTCTTGATTACACAAC-A 1777
||||| ||| |||| ||| ||||||||||||||| |||| || |||| | ||||| |
Sbjct 1423 GAGGAGCAGCAGAGAGTCCCGGAGTCGATGGGAATGGTAATTCTTTTGACCATACAACCA 1482
Query 1778 AAGCTGCTGCATCTTGCTTGGCATCCAA-ACGAGAACTCAATTGCTTGCGCCGCTGCAAA 1836
|| |||||||||| || |||||||||| | || ||||| || |||||||||||||| ||
Sbjct 1483 AAT-TGCTGCATCTCGCATGGCATCCAACA-GAAAACTCGATAGCTTGCGCCGCTGCCAA 1540
Query 1837 TAGCTTGTACATGTACTATGCTTAA 1861
|| |||||||||||||||||||||
Sbjct 1541 CAGTTTGTACATGTACTATGCTTAA 1565
> Ahg471984 jgi|Araly1|471984|fgenesh2_kg.1__1938__AT1G17720.1
Length=2440
Score = 684 bits (370), Expect = 0.0
Identities = 762/949 (80%), Gaps = 36/949 (4%)
Strand=Plus/Plus
Query 927 CAGGAGGCA-TCTCTTCGCTGCGATTACCAGTGGTAACTAGCCATGAGTCGAGCCCTGTG 985
||||||||| || | || ||||| ||||| ||||| || ||||| ||| | | || ||||
Sbjct 860 CAGGAGGCATTC-CATCTCTGCGTTTACCTGTGGTTACAAGCCAGGAGACCAACCTTGTG 918
Query 986 GCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAAT 1045
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 919 GCTAGATGCCGAAGAGTATATGCTCATGCTCATGATTACCATATTAATTCAATCTCAAAT 978
Query 1046 AACAGCGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATTAATCTTTGGAATCTG 1105
| |||||| || ||||| |||||||| ||||||||| ||||| | ||||| |||||| ||
Sbjct 979 AGCAGCGATGGAGAAACCTTTATTTCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTG 1038
Query 1106 GAAATTAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAA-ATGGAAGATCT 1164
||||||||||| || |||||||||||||||||||| ||||| | ||| ||||| || ||
Sbjct 1039 GAAATTAGCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCAC-AAACATGGAGGA-CT 1096
Query 1165 -ATCTGAGGTTATCACATCAGCAGAATTTCATCCTACCCATTGCAATATGTTAGCCTATA 1223
| |||||||||| |||||||| || |||||||||| |||||| |||||| | || ||||
Sbjct 1097 TAACTGAGGTTATTACATCAGCTGAGTTTCATCCTATCCATTGTAATATGCTCGCATATA 1156
Query 1224 GCAGTTCGAAAGGTTCAATTCGCCTGATTGATCTGCGCCAGTCAGCTTTATGTGATTCAC 1283
| ||||| ||||| |||||||| |||||||| |||| || |||||| | |||||||| |
Sbjct 1157 GTAGTTCAAAAGGCTCAATTCGTTTGATTGATATGCGTCAATCAGCTCTGTGTGATTCTC 1216
Query 1284 ATTCAAAATTGTTTGAGGAACCAGA-GCAAGCAGGTCCTAA-ATCGTTCTTT-ACTGAGA 1340
|| ||||||| ||||| ||||| || ||| | ||| | || ||| || ||| || ||||
Sbjct 1217 ATACAAAATTATTTGAAGAACCGGAAGCAC-CTGGTTC-AAGATCATT-TTTCACAGAGA 1273
Query 1341 TAATTGCTTCAGTCTCAGACATCAAATT-TGCAAAAGAAGGAAGATATC-TACTTAGCCG 1398
||||||| ||| | ||||| || ||||| | |||| || || ||||| | ||||||| ||
Sbjct 1274 TAATTGCCTCAATTTCAGATATTAAATTCT-CAAAGGATGGGAGATA-CATACTTAGTCG 1331
Query 1399 TGACTATATGACACTTAAGTTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTT 1458
|| || ||||| || ||| | |||||||| |||||||| | |||||||| ||| |||
Sbjct 1332 CGATTACATGACGCTCAAGCTGTGGGACATAAACATGGATTCTGGTCCAGTTGCATCTTA 1391
Query 1459 CCAGGTTCATGAATATTTGAAACCAAAGCTCTGTGATTTATATGAAAATGATTCCATCTT 1518
|||||||||||| || ||| ||| | ||| || ||| ||||||||||||| ||||||||
Sbjct 1392 CCAGGTTCATGAGCATCTGAGACCCAGGCTATGCGATCTATATGAAAATGACTCCATCTT 1451
Query 1519 TGACAAGTTCGAGTGTTGTATAAGTGGCAATGGCTTGCGAGCAGCTACAGGTTCTTACAG 1578
||| || || ||||||||| | |||||| |||| ||| | | ||| ||||||||||||||
Sbjct 1452 TGATAAATTTGAGTGTTGTCTGAGTGGCGATGGATTGAGGGTAGCAACAGGTTCTTACAG 1511
Query 1579 CAATCTGTTCCGTGTGTTTGGTGTTGCCCCC-GGAAGTACTGA-GACGGCAACCTTAGAA 1636
|||||| ||||| || ||||| | | | | || ||||| || | | ||||| || |||
Sbjct 1512 CAATCTATTCCGCGTATTTGGAGC-GTCTCAAGGTAGTACCGAAG-CTGCAACTTTGGAA 1569
Query 1637 GCAAGCAGAAACCCAATGAGGAGACATGTCCCA-ATTCC-GTCGAGGCCATCCAGAGC-A 1693
|| |||| |||||| |||||||| || ||| | | || | | || || |||||| | |
Sbjct 1570 GCTAGCAAAAACCCGATGAGGAGGCAAATCC-AGACACCTG-CAAGACCTTCCAGATCTA 1627
Query 1694 CTAAGCAGTATAACGCGTGTCGTAAGTA-GAGGATCAGAGAGTCCGGGAGTC-GATGGGA 1751
|| ||||||| || ||||| || || | |||||||||||||||| ||| | || || |
Sbjct 1628 -TAGGCAGTATGACACGTGTGGTTAG-ACGAGGATCAGAGAGTCCCGGAA-CAGA-GGCA 1683
Query 1752 A-TACTAATGC-TCTTGATTACACAACAAAGCTGCTGCATCTTGCTTGGCATCCAA-ACG 1808
| | || || | | |||| |||||| ||| |||||||| | || ||||| |||| | |
Sbjct 1684 AATGGGAACGCATAT-GATTTCACAACTAAGTTGCTGCATATGGCATGGCACCCAACA-G 1741
Query 1809 AGAACTCAATTGCTTGCGCCGCTGCAAATAGCTTGTACATGTACTATGC 1857
|||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 1742 AGAACTCAATTGCTTGTGCAGCAGCAAACAGCTTGTACATGTACTATGC 1790
Score = 381 bits (206), Expect = 1e-104
Identities = 357/429 (83%), Gaps = 14/429 (3%)
Strand=Plus/Plus
Query 372 CTTTGGAATGGAGATTCTCTCAGGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAG 431
|||| || ||||||||||||||||||||||| || |||| ||| || ||||||||||| |
Sbjct 329 CTTTAGAGTGGAGATTCTCTCAGGTCTTCGGCGAGCGAACCGCCGGAGAAGAAGTTCAGG 388
Query 432 AAGTTGATATAATCTCAGCGATTGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGG 491
||||||| || || ||||| || ||||||||||| |||| |||||||||| ||||| |
Sbjct 389 AAGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTTGCAACTGGTG 448
Query 492 ACCGTGGAGGACGTGTTGTTCTTTTCGAGAGAACCGATACCAATA-AT-A-GCAGTGGAA 548
||||||| || || || ||||||||||| || || ||||| || | || | | || ||
Sbjct 449 ACCGTGGGGGCCGAGTAGTTCTTTTCGAAAGGACAGATACTAA-AGATCATGGAG-GG-T 505
Query 549 CCA-GAAGAGAGCTTGAAGAAG-CTGATTATCCACTGAGGCATCCAGAGTTTCGTTATAA 606
||| |||| || |||| || || | ||||| ||| | |||||||| |||||| | |||||
Sbjct 506 CCAGGAAG-GATCTTG-AGGAGACGGATTACCCAGTTAGGCATCCTGAGTTTAGATATAA 563
Query 607 AACAGAGTTTCAGAGTCATGACCCTGAGTTTGATTACCTCAAGAGTTTGGAGATAGAGGA 666
||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 564 AACAGAGTTTCAGAGTCATGAGCCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGA 623
Query 667 GAAAATTAACAAAATTAGATGGTGTCAAACAGCAAATGGAGCTCTT-TTTCTCCTCTCGA 725
|||||| |||||||| ||||||||||| |||||||||| || || ||||| || || |
Sbjct 624 GAAAATCAACAAAATCAGATGGTGTCAGCCAGCAAATGGTGCA-TTGTTTCTGCTTTCCA 682
Query 726 CCAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGACAAGAAGATCAAGAAAATCT-GT 784
| || |||||||||||||| | ||||||||| ||||| ||||||||||||||||| | ||
Sbjct 683 CAAACGATAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAAT-TAGT 741
Query 785 GATATGAAT 793
|| ||||||
Sbjct 742 GAAATGAAT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87988465950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5