BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51700.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474287 jgi|Araly1|474287|fgenesh2_kg.1__4241__AT1G51700.1 767 0.0
Ahg950837 jgi|Araly1|950837|scaffold_802724.1 165 6e-40
> Ahg474287 jgi|Araly1|474287|fgenesh2_kg.1__4241__AT1G51700.1
Length=757
Score = 767 bits (415), Expect = 0.0
Identities = 557/619 (90%), Gaps = 36/619 (6%)
Strand=Plus/Plus
Query 193 AAAAATGCAGGATCTGACGTCAGCAGCAGCGTATTATCATCAGTCGATGATGATGACGAC 252
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 145 AAAAATGCAGGATCTGACGTCAGCAGCGGCGTATTACCATCAATCGATGATGATGACGAC 204
Query 253 GGCGAAACAGAACCAACCAGAGTTACCAGAACAAGAACAGCTAAAGTGTCCTCGCTGTGA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 GGCGAAACAGAACCAACCAGAGTTACCAGAACAAGAACAGCTAAAGTGTCCTCGCTGTGA 264
Query 313 CTCACCTAACACTAAATTCTGTTACTACAACAATTACAATCTGTCACAGCCCCGTCACTT 372
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 265 CTCACCCAACACTAAATTCTGTTACTACAACAATTATAATCTGTCACAGCCCCGTCACTT 324
Query 373 TTGCAAAAACTGTCGTCGTTACTGGACTAAAGGCGGTGCTCTTCGTAACATCCCCGTCGG 432
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TTGCAAAAGCTGTCGTCGTTACTGGACTAAAGGCGGTGCTCTTCGTAACATCCCCGTCGG 384
Query 433 TGGTGGAACTCGGAAAAGCAACAAACGATC-----CG-----GT-T-CTTCT-C-C-GTC 477
|||||||| ||| |||| |||||||||||| || || | ||||| | | |||
Sbjct 385 TGGTGGAATTCGAAAAAACAACAAACGATCTGGTTCGTCATCGTCTTCTTCTTCTCCGTC 444
Query 478 TAGTAATCTCAAGAACCAAACCGTCGCTGAGAAACCTGATCA-TCATGGGTCCGGGTCAG 536
|||||||||||||| |||||||||||||| | | |||| || |||||||||||||
Sbjct 445 GAGTAATCTCAAGAATCAAACCGTCGCTGATCATC---ATCAGTC-TGGGTCCGGGTCAA 500
Query 537 AA---GA--AAAA-GAAGAGAGAGTTTCGGGTCAAGAAATGAATCCGACCCGGATGTTAT 590
|| || |||| |||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 501 AATTAGAGGAAAAAGAAGAGAGGGTTTCGGGTCAAGAAATGGATCCGGCCCGGATGTTAT 560
Query 591 ACGGGTTACCAGTTGGAGATCCGA--A-TGGTGCGAGTTTTAGTTCG-TTGTTGGCGTCG 646
|||||||||| ||||||||||||| | ||||| ||||||||||||| || |||||||||
Sbjct 561 ACGGGTTACCGGTTGGAGATCCGATTAGTGGTGGGAGTTTTAGTTCGCTT-TTGGCGTCG 619
Query 647 AATATGCAGATGGGTGGGCTTGTTTACGAGTCCGGGTCGCGTTGGTTACC-AGGTATGGA 705
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 620 AATATGCAGATGGGTGGGCTTGTTTACGAATCCGGGTCGCGTTGGTTACCGAG-TATGGA 678
Query 706 TTTGGGTTTGGGTTCGG-T--ACGGAGGAGTGATGACACGTGGACTGACTTAGCTATGAA 762
||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 679 TTTGGGTTTGGGTTCGGGTCTACGGAGGAACGATGACACGTGGACTGATTTAGCCATGAA 738
Query 763 CAGAATGGAGAAGAATTGA 781
|||| ||||||||||||||
Sbjct 739 CAGAGTGGAGAAGAATTGA 757
Score = 89.8 bits (48), Expect = 4e-17
Identities = 75/86 (87%), Gaps = 9/86 (10%)
Strand=Plus/Plus
Query 7 AACCCACCACCAAATAACTCCACTCTTTATCTCTCTTCCTCCTTCTCCTATAACTTGCAA 66
|||||||||||||||| |||||||| | ||| || | || | ||||| ||||||||||
Sbjct 1 AACCCACCACCAAATATCTCCACTC--T-TCT-TC-T-CT-C--CTCCTGTAACTTGCAA 51
Query 67 CTTCCCACACCAAAAAAGATTCCATC 92
||||||||||||||||||||||||||
Sbjct 52 CTTCCCACACCAAAAAAGATTCCATC 77
> Ahg950837 jgi|Araly1|950837|scaffold_802724.1
Length=980
Score = 165 bits (89), Expect = 6e-40
Identities = 126/144 (88%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 296 AAGTGTCCTCGCTGTGACTCACCTAACACTAAA-TTCTGTTACTACAACAATTACAATCT 354
||||||||||| ||| | || | |||||| ||| ||||||||||||||||||||||||||
Sbjct 175 AAGTGTCCTCGTTGTAATTCTCTTAACAC-AAAGTTCTGTTACTACAACAATTACAATCT 233
Query 355 GTCACAGCCCCGTCACTTTTGCAAAAACTGTCGTCGTTACTGGACTAAAGGCGGTGCTCT 414
|| ||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 234 TTCTCAGCCTCGACACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGCGGTGTTCT 293
Query 415 TCGTAACATCCCCGTCGGTGGTGG 438
|||||| | ||| |||| |||||
Sbjct 294 CCGTAACGTTCCCATCGGAGGTGG 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5