BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G51710.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923661 jgi|Araly1|923661|scaffold_104942.1 2475 0.0
Ahg479647 jgi|Araly1|479647|fgenesh2_kg.3__2348__AT3G21280.1 1465 0.0
> Ahg923661 jgi|Araly1|923661|scaffold_104942.1
Length=1491
Score = 2475 bits (1340), Expect = 0.0
Identities = 1443/1493 (97%), Gaps = 5/1493 (0%)
Strand=Plus/Plus
Query 53 CTCT-CAGTTCTCACAGCGAAGATGCCTACAGTAAGCGTGAAGTGGCAAAAGAAAGTGTT 111
|||| ||||||||||||| |||||||| | |||||||||||||||||||||||| |||||
Sbjct 1 CTCTCCAGTTCTCACAGCAAAGATGCCCAGAGTAAGCGTGAAGTGGCAAAAGAATGTGTT 60
Query 112 GGATGGTATCGAGATTGACGTTAGTCTGCCTCCTTATGTTTTCAAGGCTCAGTTGTATGA 171
|||||||||||||| ||| |||||||||||||| ||||||||| ||||| ||||||||
Sbjct 61 TGATGGTATCGAGATCGACACTAGTCTGCCTCCTTTTGTTTTCAAAGCTCATTTGTATGA 120
Query 172 TTTGACTGGAGTTCCACCAGAACGCCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGA 231
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTGACTGGAGTTCCTCCTGAACGCCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGA 180
Query 232 TGATGGAGATTGGGCTGCTATTGG-TGTGAAAGATGGTCAAAAATTGATGATGATGGGAA 290
||||||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 181 TGATGGAGATTGGTCTGCTATTGGAT-TGAAAGAAGGTCAAAAATTGATGATGATGGGAA 239
Query 291 CTGCTGATGAGATAGTGAAAGCTCCTGAGAAGGCCATTGTTTTTGCAGAGGATCTACCTG 350
|||||||||| || |||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 240 CTGCTGATGAAATTGTGAAAGCTCCTGAAAAGGCCATTGTTTTTGCGGAGGATTTACCTG 299
Query 351 AAGAAGCGCTAGCCACTAATCTGGGTTACAGTGCTGGCCTTGTCAATCTTGGCAACACGT 410
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 AAGAAGCGCAAGCCACTAATCTGGGTTACAGTGCTGGTCTTGTCAATCTTGGCAACACGT 359
Query 411 GTTACATGAACTCCACGGTGCAGTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTAT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTACATGAACTCCACGGTGCAGTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTAT 419
Query 471 CCAATTACTCACTTGCTGCCCGAAGCAATGATGTTGACCAGACTTCTCACATGCTCACAG 530
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CTAATTACTCACTTGCTGCACGAAGCAATGATGTCGACCAGACTTCTCACATGCTCACAG 479
Query 531 TTGCCACACGTGAGTTATTTGGTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTTCAC 590
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 480 TTGCCACACGTGAGTTATTCGGTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTACAC 539
Query 591 AGTTCTGGATGGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGC 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTTCTGGATGGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGC 599
Query 651 ACATGCAGCAGGATGCTGAAGAATGTTGGACACAACTGTTATACACCCTTTCTCAGTCCC 710
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 ACATGCAGCAGGATGCTGAAGAATGTTGGACACAACTGTTATACACTCTTTCTCAGTCCC 659
Query 711 TAAAAGCACCAACTTCCAGCGAAGGTGCTGATGCTGTGAAAGCTCTATTTGGTGTCAATC 770
| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 660 TTAAAGCACCAACTTCCAGCGAAGATTCTGATGCTGTGAAAGCTCTGTTTGGTGTCAATC 719
Query 771 TCCAGAGCAGGTTGCATTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTAT 830
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTCGGAGCAGGTTGCATTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTAT 779
Query 831 ATTCTCTAAAATGTCATATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTCTCTAAAATGTCATATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATG 839
Query 891 GACTGAAAGGGGAACTTGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTCTACGTCA 950
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 840 GACTGAAAGGGGAACTTGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTTTACGTCA 899
Query 951 AGGAGTCACTTATAGATTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGGTTTTTCT 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 AGGAGTCACTTATAGATTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGATTTTTCT 959
Query 1011 GGAAAAGGGAGAGTAATCAGAAAGCAAAGATCCTCAGGAAAGTGGATTACCCGCTGGTGT 1070
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 960 GGAAAAGGGAGAGTAATCAGAAAGCAAAGATTCTCAGGAAAGTGGATTATCCGCTGGTGT 1019
Query 1071 TGGATATATTTGACCTTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGATATATTTGACCTTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGA 1079
Query 1131 AACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAA 1190
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AACTTAGAGATGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAA 1139
Query 1191 AGGACAGTGATGTGAAAATGACTGATGCAGAGGCGTCTGCAAATGGAAGTGGAGAATCAT 1250
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1140 AGGACAGTGATGTGAAAATGACTGATGCAGAGGCGTCAGCAAATGGAAGTGGAGAATCAT 1199
Query 1251 CCACAGTAAACCCACAGGAAGGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCT 1310
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1200 CCACAGTAAACCCACAGGAAGGTGCTACTTCTGAGAAGGAAACTCACATGACTGGAATCT 1259
Query 1311 ATGACTTGGTCGCTGTGTTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTG 1370
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATGACTTGGTCGCTGTGCTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTG 1319
Query 1371 CATGGGTCAAGCAAGAGAGTGGCAAATGGATTCAATATGATGATGACAACCCGAGCATGC 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CATGGGTCAAGCAAGAGAGTGGCAAATGGATTCAATATGATGATGACAACCCGAGCATGC 1379
Query 1431 AACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGGTGATTGGCATATGGCGTACATCA 1490
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1380 AACGCGAGGAAGACATCACAAAGCTATCCGGAGGAGGTGATTGGCATATGGCGTACATCA 1439
Query 1491 CAATGTACAAAGCCCGCTTCGTCTCCATGTAATCTCTCTCTTTCTTTTGATGA 1543
||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1440 CAATGTACAAAGCCCGCTTCGTCTCCATGTAATCTCTCT-TT-CTTTTGATGA 1490
> Ahg479647 jgi|Araly1|479647|fgenesh2_kg.3__2348__AT3G21280.1
Length=1793
Score = 1465 bits (793), Expect = 0.0
Identities = 1282/1511 (85%), Gaps = 62/1511 (4%)
Strand=Plus/Plus
Query 80 ACAGTAAGCGTGAAGTGGCAAAAGAAAGTGTTGGATG-GTATCGAGATTGACGTTAGTCT 138
||||| |||||||||||||||||||| ||||| || | |||| |||||||| || |||
Sbjct 183 ACAGTGAGCGTGAAGTGGCAAAAGAAGGTGTTTGA-GAGTATGGAGATTGA---TACTCT 238
Query 139 ---GCCTCCTTATGTTTTCAAGGCTCAGTTGTATGATTTGACTGGAGTTCCACCAGAACG 195
|||||||||||| ||||||||||||||||||||||||| |||||| || || || ||
Sbjct 239 CCAGCCTCCTTATGTATTCAAGGCTCAGTTGTATGATTTGAGTGGAGTACCGCCTGAGCG 298
Query 196 CCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGATGATGGAGATTGGGCTGCTATT-G 254
||||||||||||||||||||||| || || |||||||||| ||||||| || | || |
Sbjct 299 GCAAAAGATCATGGTCAAAGGTGGACTTTTGAAGGATGATGCAGATTGGTCTAC-GTTGG 357
Query 255 GTGTGAAAGATGGTCAAAAATTGATGATGATGGGAACTGCTGATGAGATAGTGAAAGCTC 314
| | ||| ||||||||||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct 358 GACTCAAAAATGGTCAAAAATTGATGATGATGGGAACTGCAGATGAAATAGTCAAGGCTC 417
Query 315 CTGAGAA-GG-CCATTGTTTTTGCAGAGGATCTACCTGAAGAAGCGCTAGCCACTAATCT 372
| ||||| || || ||||||| |||||||| ||||| || | | |||| |||||||
Sbjct 418 CAGAGAAGGGTCC--TGTTTTTATGGAGGATCTTCCTGAGGAGGAACAAGCCGCTAATCT 475
Query 373 GGGTTACAGTGCTGGCCTTGTCAATCTTGGCAACACGTGTTACATGAACTCCACGGTGCA 432
|||||||||||||||||| ||||||||||| ||||| || ||||||||||| ||| ||||
Sbjct 476 GGGTTACAGTGCTGGCCTAGTCAATCTTGGAAACACCTGCTACATGAACTCAACGATGCA 535
Query 433 GTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTATCCAATTACTCACTTGCTGCCCG 492
||| |||||||||||||||||||||||||||| ||||||||||||| || | |||| ||
Sbjct 536 GTGTTTAAAATCTGTCCCAGAGTTGAAATCTGAATTATCCAATTAC-CA-AT-CTGCTCG 592
Query 493 AAGCAATGATGTTGACCAGACTTCTCACATGCTCACAGTTGCCACACGTGAGTTATTTGG 552
|| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 593 AACCAAGGATGTTGATCAGACTTCTCACATGCTCACAGTTGCAACACGTGAGTTATTTAG 652
Query 553 TGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCT-T-CACAGTTCTGGATGGTATTACGA 610
|||||||||| ||||||||| |||||| ||||| | | || ||||||||||| |||| |
Sbjct 653 AGAGCTTGATAAAAGTGTCAAGGCTGTTGCGCCTATGC-CA-TTCTGGATGGTGTTACAA 710
Query 611 AAAAAGTATCCTCAGTTTAG-TCAGTTGCAGAATGG-AATGCACATGCAGCAGGATGCTG 668
||||| |||||||||||| | ||||||||| || || ||| |||||||| ||||||||||
Sbjct 711 AAAAAATATCCTCAGTTT-GCTCAGTTGCATAACGGAAAT-CACATGCAACAGGATGCTG 768
Query 669 AAGAATGTTGGACACAACTGTTATACACCCTTTCTCAGTCCCTAAAAGCACCAACTTCC- 727
||||||||||||||||| |||| ||||| ||||| |||||||||||| | ||| | ||
Sbjct 769 AAGAATGTTGGACACAAATGTTGTACACTCTTTCCCAGTCCCTAAAACCGCCATC-GCCT 827
Query 728 AGCGAAGGTGCTGATGCTGTGAAAGCTCTATTTGGTGTCAATCTCCAG-AGCAGGTTGCA 786
| ||||| | ||||||||||||| ||||| |||||| |||| || | | |||||||||||
Sbjct 828 ACCGAAGATCCTGATGCTGTGAAGGCTCTTTTTGGTCTCAACCTTC-GTAGCAGGTTGCA 886
Query 787 TTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTATATTCTCTAAAATGTCA 846
||| ||||||||| | ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct 887 TTGCCAAGAAAGTAGTGAAGAAAGCTCGGAGACAGAATCTGTCTTTTCTCTGAAATGTCA 946
Query 847 TATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGGGAACT 906
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 947 CATATCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGAGAACT 1006
Query 907 TGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTCTACGTCAAGGAGTCACTTATAGA 966
||||||||||||||||||||| || ||||| || | ||| | |||||||| ||||||||
Sbjct 1007 TGAAAAAACATCTCCTGCTCTGGGTCGTACAGCGGTTTACATTAAGGAGTCTCTTATAGA 1066
Query 967 TTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGGTTTTTCTGGAAAAGGGAGAGTAA 1026
||| |||||||||||||||||||||||||| ||| | || ||||||||| ||||||||||
Sbjct 1067 TTCGTTGCCAAGGTACTTGACTGTTCAGTTTGTGAGATTCTTCTGGAAACGGGAGAGTAA 1126
Query 1027 TCAGAAAGCAAAGATCCTCAGGAAAGTGGATTACCCGCTGGTGTTGGATATATTTGACCT 1086
|||||||||||| || ||| ||||||||||||| ||| ||| ||||||||||| ||||||
Sbjct 1127 TCAGAAAGCAAAAATTCTCCGGAAAGTGGATTATCCGTTGGAGTTGGATATATATGACCT 1186
Query 1087 TTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGAAACTTAGAGAGGAG-G 1145
||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
Sbjct 1187 TTGTTCTGAGGATCTTCGAAAGAAACTGGAAGCTCCTCGCCAGAAACTGAGAGAT-ATTG 1245
Query 1146 AAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGAC-AGTGATGTG 1204
||||| ||||||||||||| ||| | ||||| ||||| ||||||||| | | |||||||
Sbjct 1246 AAGGTCAAAAGCTTGGTCTGCAAGCCAGTGCAAAGAGCAGCTCAAAGGGCGA-TGATGTG 1304
Query 1205 AAAATGACTGATGCAGAGGCGTC-TGCAAATGGAAGTGGAGAATCATCCACAG-TAAACC 1262
|||||||||||||| |||| || | |||| |||||||| || |||||| | | | | ||
Sbjct 1305 AAAATGACTGATGCTGAGGAATCAT-CAAACGGAAGTGGTGAGTCATCCTCCGGTGA-CC 1362
Query 1263 CACA-GGAAGGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTC 1321
||| ||| ||| |||| ||| | ||||||| ||||| |||||| |||||
Sbjct 1363 AACATGGA-GGTGCTTCGTCT----------C--ACATGACCGGAATTTATGACCTGGTC 1409
Query 1322 GCTGTGTTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAG 1381
| |||||||||||||| ||||| || ||||||||||| ||||||||| |||||||||||
Sbjct 1410 TCAGTGTTGACCCACAAAGGCAGAAGCGCAGACTCTGGGCATTATGTTTCATGGGTCAAG 1469
Query 1382 CAAGAGAGTGGCAAATGGATTCAATATGATGATGAC-AACCCGAGCATGCAACGCGAAGA 1440
||||||||||| || ||| ||||||| || |||| | ||| ||||| | ||||| |||||
Sbjct 1470 CAAGAGAGTGGTAAGTGGGTTCAATACGACGATG-CTAACACGAGCCTTCAACGGGAAGA 1528
Query 1441 AGACATCAC-AAAGCTATCTGGAGGAGGTGATTGGCATATGGCGTACATCACAATGTACA 1499
|| ||||| ||| || |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1529 GGATATCACTAAA-CTCTCTGGAGGAGGTGATTGGCATATGGCATACATCGTAATGTACA 1587
Query 1500 AAGCCCG-CTTCGTCTCCATGTAATCTCTCTCTTTCTTTTGATGAATTT-AGTTCTTGAA 1557
| ||||| || | |||||||||||||||| ||| ||||| || | | | ||||||||||
Sbjct 1588 AGGCCCGTCT-CATCTCCATGTAATCTCT-TCT--CTTTTCATTA-TCTCAGTTCTTGAA 1642
Query 1558 ACATTCAGATC 1568
||||| |||||
Sbjct 1643 ACATTTAGATC 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5